Wall clock time and date at job start Mon Mar 30 2020 07:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86801 * 119.99516 * 2 1 4 4 H 1.48505 * 109.46889 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47575 * 299.99842 * 3 2 1 6 6 H 1.48494 * 109.47148 * 60.00188 * 3 2 1 7 7 C 1.39927 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00154 * 197.89106 * 7 2 1 9 9 C 1.41407 * 119.99780 * 17.88629 * 7 2 1 10 10 C 1.40783 * 120.20757 * 204.41366 * 9 7 2 11 11 C 1.37649 * 119.89406 * 180.02562 * 10 9 7 12 12 C 1.38520 * 120.32609 * 359.73896 * 11 10 9 13 13 C 1.39301 * 120.41946 * 0.52014 * 12 11 10 14 14 N 1.39684 * 119.94608 * 179.76291 * 13 12 11 15 15 C 1.46501 * 120.00532 * 359.71929 * 14 13 12 16 16 C 1.52998 * 109.47228 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.46992 * 180.02562 * 16 15 14 18 18 C 1.38668 * 120.41838 * 269.72141 * 17 16 15 19 19 C 1.38637 * 118.41950 * 179.78440 * 18 17 16 20 20 C 1.38226 * 119.15680 * 0.51172 * 19 18 17 21 21 N 1.31860 * 120.76798 * 359.72937 * 20 19 18 22 22 C 1.31887 * 121.72177 * 359.97438 * 21 20 19 23 23 C 1.38306 * 120.09954 * 359.48597 * 13 12 11 24 24 H 0.96998 * 120.00261 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.05218 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.83967 * 180.02562 * 11 10 9 27 27 H 1.07999 * 119.79497 * 180.28009 * 12 11 10 28 28 H 0.97007 * 119.99699 * 179.44966 * 14 13 12 29 29 H 1.08996 * 109.47176 * 300.00634 * 15 14 13 30 30 H 1.08999 * 109.46745 * 60.00547 * 15 14 13 31 31 H 1.08996 * 109.47362 * 300.00278 * 16 15 14 32 32 H 1.08999 * 109.47530 * 60.00540 * 16 15 14 33 33 H 1.07999 * 120.79178 * 0.02562 * 18 17 16 34 34 H 1.07992 * 120.41996 * 180.22450 * 19 18 17 35 35 H 1.08002 * 119.61825 * 179.74699 * 20 19 18 36 36 H 1.08000 * 119.61259 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.16631 * 180.23335 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0489 -1.2342 0.2879 9 6 1.3523 -2.4070 -0.3750 10 6 1.8263 -3.6499 0.0858 11 6 1.1833 -4.8094 -0.2843 12 6 0.0679 -4.7595 -1.1041 13 6 -0.4093 -3.5373 -1.5722 14 7 -1.5320 -3.4989 -2.4025 15 6 -2.2029 -4.7437 -2.7854 16 6 -3.3933 -4.4235 -3.6916 17 6 -4.0838 -5.7040 -4.0850 18 6 -3.7018 -6.3841 -5.2315 19 6 -4.3620 -7.5603 -5.5518 20 6 -5.3791 -8.0072 -4.7293 21 7 -5.7191 -7.3316 -3.6492 22 6 -5.1092 -6.2123 -3.3107 23 6 0.2233 -2.3616 -1.2114 24 1 -0.4850 0.8400 -0.0004 25 1 2.6930 -3.6936 0.7286 26 1 1.5475 -5.7624 0.0701 27 1 -0.4326 -5.6742 -1.3855 28 1 -1.8697 -2.6477 -2.7223 29 1 -1.5018 -5.3847 -3.3199 30 1 -2.5548 -5.2569 -1.8905 31 1 -4.0945 -3.7823 -3.1575 32 1 -3.0412 -3.9105 -4.5866 33 1 -2.9062 -6.0085 -5.8579 34 1 -4.0883 -8.1179 -6.4353 35 1 -5.9012 -8.9204 -4.9740 36 1 -5.4157 -5.6862 -2.4187 37 1 -0.1481 -1.4131 -1.5706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313455260.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:32 Heat of formation + Delta-G solvation = 45.453596 kcal Electronic energy + Delta-G solvation = -18611.940842 eV Core-core repulsion = 15739.091187 eV Total energy + Delta-G solvation = -2872.849655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.33168 -37.86556 -35.71339 -33.76620 -32.91259 -32.04863 -29.43723 -29.37664 -26.73836 -25.21368 -23.72570 -23.57768 -21.73000 -20.65041 -19.86025 -17.33287 -17.14321 -16.57417 -15.87294 -15.36775 -14.88389 -14.66765 -14.37373 -14.28206 -13.88707 -13.41770 -13.21731 -12.84546 -12.59684 -12.25198 -12.04554 -11.78345 -11.63230 -11.39355 -11.05331 -10.92949 -10.56052 -10.37957 -9.95227 -9.65618 -9.57567 -9.43414 -9.23498 -9.10217 -8.75705 -7.29813 -6.72099 -6.16966 -4.29911 0.93061 1.11078 2.86399 3.10717 3.16451 3.23919 3.34319 3.62683 3.98670 4.13938 4.36681 4.63074 4.73044 4.77249 4.82850 4.90970 5.16013 5.20816 5.42373 5.55480 5.69415 5.82017 5.91859 5.97740 6.13081 6.25311 6.28708 6.53445 6.59950 6.89026 7.11752 7.15139 7.38539 7.44781 7.80507 7.81579 7.97216 8.11513 8.18641 8.49896 8.70507 8.84607 9.02491 9.12932 10.26686 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.032707 B = 0.003392 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.892352 B = 8252.557258 C = 8745.740879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.138 3.862 10 C -0.257 4.257 11 C -0.066 4.066 12 C -0.299 4.299 13 C 0.215 3.785 14 N -0.762 5.762 15 C 0.145 3.855 16 C -0.089 4.089 17 C -0.124 4.124 18 C -0.072 4.072 19 C -0.172 4.172 20 C 0.088 3.912 21 N -0.485 5.485 22 C 0.103 3.897 23 C -0.231 4.231 24 H 0.277 0.723 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.390 0.610 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.611 -8.038 -10.016 15.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.135 3.865 10 C -0.277 4.277 11 C -0.085 4.085 12 C -0.322 4.322 13 C 0.116 3.884 14 N -0.396 5.396 15 C 0.019 3.981 16 C -0.127 4.127 17 C -0.126 4.126 18 C -0.098 4.098 19 C -0.192 4.192 20 C -0.069 4.069 21 N -0.193 5.193 22 C -0.054 4.054 23 C -0.255 4.255 24 H 0.087 0.913 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.223 0.777 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.525 -8.406 -9.476 15.849 hybrid contribution 0.875 1.325 -0.627 1.707 sum -8.650 -7.081 -10.103 15.068 Atomic orbital electron populations 1.69877 1.07498 1.28654 1.35795 1.25877 0.94673 1.01094 0.92327 0.86345 0.81109 0.81308 0.78409 1.18469 1.19854 1.20132 1.19581 0.98104 0.91285 1.40437 0.90552 1.17331 0.90097 0.91849 0.87229 1.20870 1.04863 0.92921 1.09055 1.20286 0.95110 0.96272 0.96849 1.19885 1.04481 0.94394 1.13449 1.17632 0.86311 0.94346 0.90092 1.44386 1.32030 1.06237 1.56972 1.20956 0.92048 0.88418 0.96667 1.20744 0.97438 0.93794 1.00767 1.20818 0.97691 0.98149 0.95950 1.21564 0.98216 0.94181 0.95852 1.22143 0.97976 0.97497 1.01540 1.22754 0.94813 0.98835 0.90451 1.67702 1.27907 1.07123 1.16545 1.22750 0.92063 0.92026 0.98568 1.20721 1.02641 0.94998 1.07104 0.91268 0.89374 0.89651 0.89753 0.77699 0.93330 0.93194 0.90015 0.90256 0.84748 0.84846 0.82949 0.82675 0.86507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.61 10.96 55.55 0.61 -20.00 16 2 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 3 Si 0.90 18.85 29.60 -169.99 -5.03 13.82 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 7 C -0.46 -12.56 9.05 -37.74 -0.34 -12.90 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.14 3.77 5.57 -106.85 -0.60 3.17 16 10 C -0.26 -6.54 9.79 -38.84 -0.38 -6.92 16 11 C -0.07 -1.55 10.02 -39.69 -0.40 -1.95 16 12 C -0.30 -6.89 9.32 -39.08 -0.36 -7.25 16 13 C 0.21 5.00 6.64 -83.86 -0.56 4.44 16 14 N -0.76 -14.14 5.73 -58.69 -0.34 -14.47 16 15 C 0.14 2.16 4.89 -4.04 -0.02 2.14 16 16 C -0.09 -1.00 5.49 -27.88 -0.15 -1.16 16 17 C -0.12 -1.36 5.15 -104.48 -0.54 -1.90 16 18 C -0.07 -0.71 9.86 -39.28 -0.39 -1.10 16 19 C -0.17 -1.53 10.11 -39.44 -0.40 -1.93 16 20 C 0.09 0.87 11.18 -17.54 -0.20 0.68 16 21 N -0.48 -5.93 10.36 -13.25 -0.14 -6.07 16 22 C 0.10 1.20 10.86 -17.55 -0.19 1.01 16 23 C -0.23 -6.02 8.53 -38.68 -0.33 -6.35 16 24 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 25 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 26 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 27 H 0.08 1.77 6.70 -52.49 -0.35 1.41 16 28 H 0.39 6.74 8.48 -40.82 -0.35 6.39 16 29 H 0.05 0.75 7.95 -51.93 -0.41 0.34 16 30 H 0.05 0.79 7.93 -51.93 -0.41 0.38 16 31 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.12 3.13 6.16 -52.48 -0.32 2.80 16 LS Contribution 317.53 15.07 4.79 4.79 Total: -1.00 -29.80 317.53 -9.82 -39.62 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -4.77 Total: 10.45 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -4.94 Total: -28.13 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.13 Total: -40.54 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.80 -9.82 -39.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313455260.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.076 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds