Wall clock time and date at job start Mon Mar 30 2020 07:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38097 * 120.00008 * 2 1 4 4 C 1.38855 * 119.99725 * 180.25330 * 3 2 1 5 5 N 1.40015 * 120.00256 * 179.76862 * 4 3 2 6 6 C 1.39688 * 119.99864 * 329.77358 * 5 4 3 7 7 C 1.39356 * 119.95538 * 329.93054 * 6 5 4 8 8 C 1.38475 * 120.42430 * 179.97438 * 7 6 5 9 9 C 1.37694 * 120.32225 * 0.04752 * 8 7 6 10 10 C 1.40755 * 119.90304 * 359.97398 * 9 8 7 11 11 C 1.41405 * 120.20847 * 180.02562 * 10 9 8 12 12 H 1.08005 * 120.00054 * 334.62632 * 11 10 9 13 13 C 1.39928 * 120.00115 * 154.63212 * 11 10 9 14 14 N 1.30829 * 119.99803 * 343.05884 * 13 11 10 15 15 Si 1.86798 * 120.00258 * 163.06338 * 13 11 10 16 16 H 1.48500 * 109.47204 * 59.99495 * 15 13 11 17 17 H 1.48502 * 109.47302 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47084 * 299.99867 * 15 13 11 19 19 C 1.38305 * 119.95169 * 149.97358 * 6 5 4 20 20 C 1.38908 * 119.99851 * 359.49415 * 4 3 2 21 21 C 1.38053 * 119.99757 * 0.25297 * 20 4 3 22 22 C 1.38857 * 119.99799 * 179.74921 * 2 1 3 23 23 N 1.39971 * 119.99535 * 0.02562 * 22 2 1 24 24 H 1.09002 * 109.46854 * 270.25190 * 1 2 3 25 25 H 1.09000 * 109.47199 * 30.25234 * 1 2 3 26 26 H 1.09000 * 109.47186 * 150.25491 * 1 2 3 27 27 H 1.07996 * 119.99974 * 0.02562 * 3 2 1 28 28 H 0.97006 * 119.99844 * 149.77517 * 5 4 3 29 29 H 1.07999 * 119.79026 * 0.04909 * 7 6 5 30 30 H 1.07998 * 119.83608 * 180.02562 * 8 7 6 31 31 H 1.08006 * 120.04905 * 179.97438 * 9 8 7 32 32 H 0.97000 * 120.00398 * 180.02562 * 14 13 11 33 33 H 1.08002 * 120.16545 * 0.25862 * 19 6 5 34 34 H 1.08001 * 120.00332 * 180.27374 * 20 4 3 35 35 H 1.07997 * 119.99711 * 180.02562 * 21 20 4 36 36 H 0.97000 * 119.99419 * 179.97438 * 23 22 2 37 37 H 0.96997 * 120.00297 * 359.97438 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1960 0.0000 4 6 3.5861 1.1959 -0.0053 5 7 4.2862 2.4084 -0.0102 6 6 3.7280 3.5348 -0.6191 7 6 2.8672 3.3843 -1.7047 8 6 2.3079 4.4942 -2.3153 9 6 2.5974 5.7597 -1.8566 10 6 3.4654 5.9276 -0.7614 11 6 3.7668 7.2244 -0.2846 12 1 3.6959 8.0737 -0.9481 13 6 4.1569 7.4072 1.0467 14 7 3.9313 6.4682 1.9293 15 14 4.9998 8.9920 1.5638 16 1 4.1007 10.1423 1.2921 17 1 5.3086 8.9376 3.0153 18 1 6.2597 9.1562 0.7950 19 6 4.0310 4.7980 -0.1444 20 6 4.2805 -0.0071 0.0000 21 6 3.5902 -1.2026 0.0053 22 6 2.2013 -1.2026 0.0053 23 7 1.5013 -2.4146 0.0100 24 1 -0.3633 0.0045 1.0277 25 1 -0.3633 0.8877 -0.5177 26 1 -0.3633 -0.8923 -0.5099 27 1 1.6575 2.1312 0.0004 28 1 5.1590 2.4662 0.4093 29 1 2.6338 2.3956 -2.0713 30 1 1.6417 4.3665 -3.1557 31 1 2.1590 6.6224 -2.3364 32 1 4.2013 6.5950 2.8522 33 1 4.7018 4.9162 0.6937 34 1 5.3606 -0.0072 0.0003 35 1 4.1301 -2.1379 0.0098 36 1 1.9863 -3.2547 0.0133 37 1 0.5313 -2.4146 0.0100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313472583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:12 Heat of formation + Delta-G solvation = 40.846717 kcal Electronic energy + Delta-G solvation = -19297.843033 eV Core-core repulsion = 16424.793609 eV Total energy + Delta-G solvation = -2873.049424 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.51669 -37.72721 -35.51862 -33.58237 -32.65811 -32.15463 -29.51052 -28.66925 -27.21207 -25.79869 -25.18674 -22.14179 -21.27059 -20.59747 -19.79226 -17.40835 -16.88966 -16.68935 -15.92100 -15.56932 -14.74247 -14.53157 -13.93612 -13.67493 -13.58428 -13.11136 -12.89741 -12.77082 -12.42361 -12.20445 -12.06774 -11.67990 -11.48171 -11.38964 -11.05948 -10.79347 -10.62902 -10.52117 -10.34526 -9.69823 -9.65492 -9.26450 -8.86560 -8.33815 -7.34964 -7.29335 -6.72438 -6.05555 -4.34466 1.77137 2.04481 2.85615 3.08208 3.11228 3.13441 3.28021 3.95879 4.08895 4.24788 4.30745 4.69521 5.17692 5.18921 5.54021 5.69967 5.74599 5.79963 5.85853 5.95805 6.20612 6.30242 6.45075 6.56750 6.58963 6.68757 6.86154 6.92466 7.08346 7.10718 7.21714 7.34432 7.42108 7.71042 7.86116 7.93501 7.96152 8.05031 8.12636 8.44097 8.60895 8.76917 8.94761 9.03108 10.23299 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029313 B = 0.004404 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.988015 B = 6356.802715 C = 6669.450562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.131 4.131 3 C -0.111 4.111 4 C 0.160 3.840 5 N -0.691 5.691 6 C 0.182 3.818 7 C -0.270 4.270 8 C -0.075 4.075 9 C -0.244 4.244 10 C 0.131 3.869 11 C -0.465 4.465 12 H 0.077 0.923 13 C 0.077 3.923 14 N -0.793 5.793 15 Si 0.906 3.094 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.264 1.264 19 C -0.203 4.203 20 C -0.142 4.142 21 C -0.163 4.163 22 C 0.165 3.835 23 N -0.889 5.889 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.130 0.870 28 H 0.397 0.603 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.279 0.721 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.390 0.610 37 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 -12.474 -0.600 12.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.136 4.136 3 C -0.133 4.133 4 C 0.060 3.940 5 N -0.314 5.314 6 C 0.088 3.912 7 C -0.292 4.292 8 C -0.094 4.094 9 C -0.264 4.264 10 C 0.128 3.872 11 C -0.495 4.495 12 H 0.095 0.905 13 C -0.140 4.140 14 N -0.418 5.418 15 Si 0.730 3.270 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.225 4.225 20 C -0.164 4.164 21 C -0.186 4.186 22 C 0.062 3.938 23 N -0.432 5.432 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.148 0.852 28 H 0.232 0.768 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.217 0.783 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.101 -12.415 -0.398 12.598 hybrid contribution 0.568 0.392 0.524 0.866 sum -1.533 -12.023 0.126 12.121 Atomic orbital electron populations 1.20578 0.91829 1.02021 1.01609 1.19147 0.95313 0.91349 1.07796 1.20783 0.92798 0.97660 1.02090 1.17584 0.91153 0.85679 0.99617 1.42063 1.20959 1.06621 1.61783 1.17594 0.95994 0.85775 0.91885 1.20159 1.10402 0.97107 1.01536 1.20338 0.98365 0.92902 0.97763 1.20948 1.05996 0.95139 1.04316 1.17352 0.87555 0.92799 0.89529 1.19524 1.40669 0.94006 0.95319 0.90489 1.25880 0.93567 0.98081 0.96499 1.69836 1.34899 1.33741 1.03366 0.86411 0.80640 0.82131 0.77769 1.19054 1.20431 1.18891 1.20971 1.07441 0.89783 1.04319 1.20505 0.99031 0.90916 1.05993 1.20189 0.91801 0.97474 1.09160 1.17399 0.90985 0.85890 0.99502 1.42384 1.08385 1.04733 1.87659 0.91897 0.91394 0.92636 0.85190 0.76819 0.89013 0.89355 0.89142 0.90987 0.86305 0.86606 0.86855 0.78250 0.77934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 9.57 36.01 0.34 -0.95 16 2 C -0.13 -2.03 5.89 -104.44 -0.62 -2.65 16 3 C -0.11 -2.04 7.56 -39.40 -0.30 -2.34 16 4 C 0.16 2.94 5.92 -83.64 -0.49 2.44 16 5 N -0.69 -13.82 5.46 -8.41 -0.05 -13.87 16 6 C 0.18 4.26 5.91 -83.84 -0.50 3.76 16 7 C -0.27 -6.17 7.93 -39.08 -0.31 -6.48 16 8 C -0.07 -1.71 10.02 -39.69 -0.40 -2.11 16 9 C -0.24 -6.05 9.79 -38.83 -0.38 -6.43 16 10 C 0.13 3.50 5.57 -106.85 -0.59 2.90 16 11 C -0.47 -12.40 9.05 -37.74 -0.34 -12.74 16 12 H 0.08 1.97 7.90 -52.48 -0.41 1.56 16 13 C 0.08 1.95 5.15 -17.35 -0.09 1.86 16 14 N -0.79 -20.59 10.97 55.55 0.61 -19.98 16 15 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 18 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 19 C -0.20 -5.23 8.58 -38.67 -0.33 -5.56 16 20 C -0.14 -2.23 9.95 -39.40 -0.39 -2.62 16 21 C -0.16 -2.30 9.89 -39.41 -0.39 -2.69 16 22 C 0.16 2.31 6.74 -83.67 -0.56 1.74 16 23 N -0.89 -9.09 9.00 32.46 0.29 -8.80 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 26 H 0.05 0.57 6.54 -51.93 -0.34 0.23 16 27 H 0.13 2.65 6.63 -52.49 -0.35 2.30 16 28 H 0.40 7.24 8.90 -40.82 -0.36 6.87 16 29 H 0.09 2.00 6.61 -52.49 -0.35 1.65 16 30 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 32 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 33 H 0.12 3.17 6.20 -52.49 -0.33 2.84 16 34 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.39 3.17 8.84 -40.82 -0.36 2.81 16 37 H 0.39 3.44 6.82 -40.82 -0.28 3.16 16 LS Contribution 309.04 15.07 4.66 4.66 Total: -1.00 -28.50 309.04 -9.31 -37.81 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -4.45 Total: 18.33 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: -5.35 Total: -31.86 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.86 Total: -42.65 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.50 -9.31 -37.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313472583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.660 kcal (2) G-P(sol) polarization free energy of solvation -28.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds