Wall clock time and date at job start Mon Mar 30 2020 07:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38097 * 120.00008 * 2 1 4 4 C 1.38855 * 119.99725 * 180.25330 * 3 2 1 5 5 N 1.40015 * 120.00256 * 179.76862 * 4 3 2 6 6 C 1.39688 * 119.99864 * 329.77358 * 5 4 3 7 7 C 1.39356 * 119.95538 * 329.93054 * 6 5 4 8 8 C 1.38475 * 120.42430 * 179.97438 * 7 6 5 9 9 C 1.37694 * 120.32225 * 0.04752 * 8 7 6 10 10 C 1.40755 * 119.90304 * 359.97398 * 9 8 7 11 11 C 1.41405 * 120.20847 * 180.02562 * 10 9 8 12 12 H 1.08005 * 120.00054 * 334.62632 * 11 10 9 13 13 C 1.39928 * 120.00115 * 154.63212 * 11 10 9 14 14 N 1.30829 * 119.99803 * 343.05884 * 13 11 10 15 15 Si 1.86798 * 120.00258 * 163.06338 * 13 11 10 16 16 H 1.48500 * 109.47204 * 59.99495 * 15 13 11 17 17 H 1.48502 * 109.47302 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47084 * 299.99867 * 15 13 11 19 19 C 1.38305 * 119.95169 * 149.97358 * 6 5 4 20 20 C 1.38908 * 119.99851 * 359.49415 * 4 3 2 21 21 C 1.38053 * 119.99757 * 0.25297 * 20 4 3 22 22 C 1.38857 * 119.99799 * 179.74921 * 2 1 3 23 23 N 1.39971 * 119.99535 * 0.02562 * 22 2 1 24 24 H 1.09002 * 109.46854 * 270.25190 * 1 2 3 25 25 H 1.09000 * 109.47199 * 30.25234 * 1 2 3 26 26 H 1.09000 * 109.47186 * 150.25491 * 1 2 3 27 27 H 1.07996 * 119.99974 * 0.02562 * 3 2 1 28 28 H 0.97006 * 119.99844 * 149.77517 * 5 4 3 29 29 H 1.07999 * 119.79026 * 0.04909 * 7 6 5 30 30 H 1.07998 * 119.83608 * 180.02562 * 8 7 6 31 31 H 1.08006 * 120.04905 * 179.97438 * 9 8 7 32 32 H 0.97000 * 120.00398 * 180.02562 * 14 13 11 33 33 H 1.08002 * 120.16545 * 0.25862 * 19 6 5 34 34 H 1.08001 * 120.00332 * 180.27374 * 20 4 3 35 35 H 1.07997 * 119.99711 * 180.02562 * 21 20 4 36 36 H 0.97000 * 119.99419 * 179.97438 * 23 22 2 37 37 H 0.96997 * 120.00297 * 359.97438 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1960 0.0000 4 6 3.5861 1.1959 -0.0053 5 7 4.2862 2.4084 -0.0102 6 6 3.7280 3.5348 -0.6191 7 6 2.8672 3.3843 -1.7047 8 6 2.3079 4.4942 -2.3153 9 6 2.5974 5.7597 -1.8566 10 6 3.4654 5.9276 -0.7614 11 6 3.7668 7.2244 -0.2846 12 1 3.6959 8.0737 -0.9481 13 6 4.1569 7.4072 1.0467 14 7 3.9313 6.4682 1.9293 15 14 4.9998 8.9920 1.5638 16 1 4.1007 10.1423 1.2921 17 1 5.3086 8.9376 3.0153 18 1 6.2597 9.1562 0.7950 19 6 4.0310 4.7980 -0.1444 20 6 4.2805 -0.0071 0.0000 21 6 3.5902 -1.2026 0.0053 22 6 2.2013 -1.2026 0.0053 23 7 1.5013 -2.4146 0.0100 24 1 -0.3633 0.0045 1.0277 25 1 -0.3633 0.8877 -0.5177 26 1 -0.3633 -0.8923 -0.5099 27 1 1.6575 2.1312 0.0004 28 1 5.1590 2.4662 0.4093 29 1 2.6338 2.3956 -2.0713 30 1 1.6417 4.3665 -3.1557 31 1 2.1590 6.6224 -2.3364 32 1 4.2013 6.5950 2.8522 33 1 4.7018 4.9162 0.6937 34 1 5.3606 -0.0072 0.0003 35 1 4.1301 -2.1379 0.0098 36 1 1.9863 -3.2547 0.0133 37 1 0.5313 -2.4146 0.0100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313472583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:12 Heat of formation + Delta-G solvation = 24.916958 kcal Electronic energy + Delta-G solvation = -19298.533799 eV Core-core repulsion = 16424.793609 eV Total energy + Delta-G solvation = -2873.740191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84613 -39.38948 -37.01521 -35.35775 -34.00346 -33.32542 -31.41663 -30.23063 -28.51928 -27.12300 -27.03949 -23.48979 -22.96468 -22.13526 -21.38778 -19.19342 -18.16508 -17.84357 -17.29042 -17.23061 -16.44395 -16.33474 -15.28872 -14.94955 -14.81797 -14.71746 -14.45685 -14.14010 -13.97778 -13.54754 -13.50103 -13.27916 -12.95327 -12.75976 -12.60901 -12.47163 -12.18333 -12.09555 -11.74580 -11.55982 -11.44254 -11.05850 -10.42370 -9.58515 -9.28288 -8.79072 -8.57970 -7.51166 -6.34409 0.54840 0.69369 1.07085 1.31381 1.38735 1.50059 1.57620 2.22327 2.69343 2.80450 3.05507 3.20172 3.79986 4.02289 4.10026 4.42707 4.46857 4.52773 4.72472 4.75301 4.82286 4.84453 4.93337 5.06140 5.17141 5.22955 5.32974 5.36054 5.41933 5.47514 5.61467 5.72695 5.92670 5.99088 6.10226 6.15654 6.27704 6.54757 6.74473 6.89903 7.00018 7.04259 7.16302 7.18178 8.36552 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029313 B = 0.004404 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.988015 B = 6356.802715 C = 6669.450562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.143 4.143 3 C -0.131 4.131 4 C 0.123 3.877 5 N -0.692 5.692 6 C 0.193 3.807 7 C -0.270 4.270 8 C -0.071 4.071 9 C -0.266 4.266 10 C 0.102 3.898 11 C -0.503 4.503 12 H 0.076 0.924 13 C 0.037 3.963 14 N -0.824 5.824 15 Si 0.981 3.019 16 H -0.259 1.259 17 H -0.269 1.269 18 H -0.261 1.261 19 C -0.230 4.230 20 C -0.136 4.136 21 C -0.163 4.163 22 C 0.176 3.824 23 N -0.871 5.871 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.402 0.598 29 H 0.104 0.896 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.286 0.714 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.147 0.853 36 H 0.405 0.595 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 -14.830 -0.641 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.148 4.148 3 C -0.153 4.153 4 C 0.025 3.975 5 N -0.317 5.317 6 C 0.096 3.904 7 C -0.292 4.292 8 C -0.090 4.090 9 C -0.287 4.287 10 C 0.100 3.900 11 C -0.532 4.532 12 H 0.094 0.906 13 C -0.178 4.178 14 N -0.450 5.450 15 Si 0.802 3.198 16 H -0.184 1.184 17 H -0.193 1.193 18 H -0.185 1.185 19 C -0.253 4.253 20 C -0.158 4.158 21 C -0.186 4.186 22 C 0.071 3.929 23 N -0.415 5.415 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.237 0.763 29 H 0.122 0.878 30 H 0.138 0.862 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.151 0.849 35 H 0.165 0.835 36 H 0.235 0.765 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.271 -14.859 -0.439 15.038 hybrid contribution 0.522 0.835 0.518 1.113 sum -1.750 -14.024 0.079 14.133 Atomic orbital electron populations 1.20620 0.89993 1.02909 1.02399 1.19392 0.96795 0.90993 1.07644 1.20669 0.92946 0.97602 1.04058 1.17820 0.91370 0.85721 1.02571 1.41991 1.21273 1.06532 1.61868 1.17662 0.95122 0.86118 0.91519 1.20336 1.10023 0.97638 1.01154 1.20670 0.98031 0.92087 0.98184 1.21109 1.06641 0.96323 1.04599 1.17733 0.88323 0.93436 0.90554 1.19799 1.42849 0.94145 0.96453 0.90618 1.26730 0.93448 1.01692 0.95889 1.69910 1.35485 1.35787 1.03858 0.85280 0.79332 0.77549 0.77686 1.18368 1.19309 1.18492 1.20879 1.08731 0.90892 1.04826 1.20736 1.00013 0.90418 1.04650 1.20566 0.92055 0.98122 1.07851 1.17518 0.91304 0.86614 0.97416 1.42348 1.09047 1.04053 1.86031 0.91072 0.92391 0.89928 0.88378 0.76302 0.87840 0.86209 0.88560 0.90397 0.88007 0.84943 0.83517 0.76511 0.76764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 9.57 71.24 0.68 -1.69 16 2 C -0.14 -4.21 5.89 -19.75 -0.12 -4.32 16 3 C -0.13 -4.83 7.56 22.38 0.17 -4.66 16 4 C 0.12 4.53 5.92 38.14 0.23 4.76 16 5 N -0.69 -28.46 5.46 -180.51 -0.99 -29.45 16 6 C 0.19 9.32 5.91 38.17 0.23 9.54 16 7 C -0.27 -12.50 7.93 22.60 0.18 -12.32 16 8 C -0.07 -3.28 10.02 22.20 0.22 -3.06 16 9 C -0.27 -13.67 9.79 22.76 0.22 -13.45 16 10 C 0.10 5.75 5.57 -21.31 -0.12 5.63 16 11 C -0.50 -27.98 9.05 23.46 0.21 -27.76 16 12 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 13 C 0.04 1.92 5.15 85.25 0.44 2.36 16 14 N -0.82 -44.45 10.97 21.82 0.24 -44.21 16 15 Si 0.98 39.12 29.59 68.60 2.03 41.15 16 16 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 17 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 19 C -0.23 -12.52 8.58 22.86 0.20 -12.33 16 20 C -0.14 -4.03 9.95 22.39 0.22 -3.81 16 21 C -0.16 -4.03 9.89 22.38 0.22 -3.81 16 22 C 0.18 4.36 6.74 38.15 0.26 4.62 16 23 N -0.87 -14.04 9.00 -51.23 -0.46 -14.50 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.45 8.09 -2.39 -0.02 1.43 16 26 H 0.08 1.42 6.54 -2.39 -0.02 1.41 16 27 H 0.10 4.19 6.63 -2.91 -0.02 4.17 16 28 H 0.40 15.16 8.90 -92.70 -0.83 14.34 16 29 H 0.10 4.51 6.61 -2.91 -0.02 4.50 16 30 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 32 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 33 H 0.10 5.78 6.20 -2.91 -0.02 5.76 16 34 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 35 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 36 H 0.41 4.60 8.84 -92.71 -0.82 3.78 16 37 H 0.40 5.28 6.82 -92.71 -0.63 4.65 16 Total: -1.00 -64.30 309.04 2.91 -61.39 By element: Atomic # 1 Polarization: 47.07 SS G_CDS: -1.15 Total: 45.91 kcal Atomic # 6 Polarization: -63.53 SS G_CDS: 3.24 Total: -60.29 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -1.21 Total: -88.16 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -64.30 2.91 -61.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313472583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.303 kcal (2) G-P(sol) polarization free energy of solvation -64.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds