Wall clock time and date at job start Mon Mar 30 2020 07:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38788 * 120.07264 * 2 1 4 4 N 1.39664 * 120.04124 * 359.97438 * 3 2 1 5 5 C 1.38961 * 119.92461 * 180.02562 * 3 2 1 6 6 C 1.38188 * 120.07278 * 0.02562 * 5 3 2 7 7 C 1.38126 * 120.15172 * 359.73965 * 6 5 3 8 8 C 1.38771 * 120.07243 * 180.02562 * 2 1 3 9 9 N 1.39709 * 120.03777 * 359.96592 * 8 2 1 10 10 C 1.39718 * 120.00442 * 80.55553 * 9 8 2 11 11 C 1.39347 * 119.95207 * 0.26848 * 10 9 8 12 12 C 1.38471 * 120.42341 * 179.72633 * 11 10 9 13 13 C 1.37701 * 120.32709 * 0.54631 * 12 11 10 14 14 C 1.40752 * 119.89195 * 359.73320 * 13 12 11 15 15 C 1.41406 * 120.20742 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99984 * 25.83326 * 15 14 13 17 17 C 1.39927 * 120.00335 * 205.83932 * 15 14 13 18 18 N 1.30838 * 119.99796 * 18.54593 * 17 15 14 19 19 Si 1.86796 * 120.00284 * 198.54569 * 17 15 14 20 20 H 1.48499 * 109.47312 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.46897 * 120.00225 * 19 17 15 22 22 H 1.48503 * 109.47191 * 239.99817 * 19 17 15 23 23 C 1.38294 * 119.95393 * 180.54639 * 10 9 8 24 24 H 1.08998 * 109.46998 * 269.98315 * 1 2 3 25 25 H 1.08997 * 109.46684 * 29.98139 * 1 2 3 26 26 H 1.08995 * 109.47081 * 149.97798 * 1 2 3 27 27 H 0.97002 * 119.99948 * 359.97438 * 4 3 2 28 28 H 0.96997 * 120.00537 * 180.02562 * 4 3 2 29 29 H 1.07992 * 119.96323 * 179.97438 * 5 3 2 30 30 H 1.08002 * 119.92287 * 179.97438 * 6 5 3 31 31 H 1.07996 * 119.96264 * 180.27273 * 7 6 5 32 32 H 0.97005 * 119.99710 * 260.27681 * 9 8 2 33 33 H 1.08001 * 119.78941 * 0.02562 * 11 10 9 34 34 H 1.08004 * 119.84289 * 180.28037 * 12 11 10 35 35 H 1.07996 * 120.05215 * 179.74705 * 13 12 11 36 36 H 0.97002 * 119.99862 * 180.02562 * 18 17 15 37 37 H 1.08008 * 120.16289 * 359.97149 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2025 1.2011 0.0000 4 7 1.5066 2.4120 -0.0005 5 6 3.5921 1.1975 -0.0005 6 6 4.2815 -0.0002 -0.0016 7 6 3.5925 -1.1973 0.0033 8 6 2.2024 -1.2009 -0.0005 9 7 1.5062 -2.4122 -0.0004 10 6 0.9853 -2.9188 -1.1937 11 6 1.1656 -2.2179 -2.3845 12 6 0.6583 -2.7138 -3.5737 13 6 -0.0400 -3.9005 -3.5906 14 6 -0.2351 -4.6167 -2.3947 15 6 -0.9517 -5.8357 -2.4043 16 1 -0.9917 -6.4315 -3.3041 17 6 -1.6092 -6.2699 -1.2479 18 7 -1.8767 -5.4204 -0.2895 19 14 -2.1049 -8.0623 -1.0726 20 1 -1.6918 -8.8112 -2.2866 21 1 -1.4394 -8.6456 0.1199 22 1 -3.5783 -8.1550 -0.9120 23 6 0.2866 -4.1122 -1.1905 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3632 0.8901 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 0.5366 2.4139 -0.0013 28 1 1.9932 3.2511 -0.0009 29 1 4.1339 2.1317 -0.0010 30 1 5.3615 -0.0001 -0.0024 31 1 4.1343 -2.1315 0.0069 32 1 1.3880 -2.9035 0.8277 33 1 1.7085 -1.2843 -2.3807 34 1 0.8075 -2.1651 -4.4919 35 1 -0.4372 -4.2811 -4.5199 36 1 -2.3322 -5.7215 0.5123 37 1 0.1427 -4.6544 -0.2675 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313482233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:35 Heat of formation + Delta-G solvation = 44.287330 kcal Electronic energy + Delta-G solvation = -19578.423789 eV Core-core repulsion = 16705.523561 eV Total energy + Delta-G solvation = -2872.900228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.65439 -37.58036 -35.29549 -33.91598 -33.19109 -31.20676 -29.42411 -28.82633 -27.13421 -25.98318 -25.13464 -21.89119 -20.97659 -20.90101 -19.85213 -17.49206 -16.97484 -16.63318 -15.85092 -15.23094 -14.77199 -14.64402 -14.22429 -14.17014 -13.50755 -13.05977 -12.77005 -12.69365 -12.20920 -12.11995 -11.97576 -11.63425 -11.34462 -11.07431 -11.02586 -10.89745 -10.57740 -10.43897 -10.29252 -9.64690 -9.44120 -9.32351 -8.87614 -8.19269 -7.29807 -7.27024 -6.72769 -6.24116 -4.28765 1.66809 1.89456 2.87359 3.11884 3.17599 3.22524 3.33923 3.93966 3.99958 4.10053 4.39428 4.73834 5.18478 5.26635 5.47172 5.75444 5.82425 5.88869 5.99668 6.02305 6.06365 6.32690 6.54099 6.66445 6.67423 6.79704 6.86394 6.99283 7.06904 7.15899 7.19971 7.39737 7.42866 7.63310 7.84512 7.89581 8.00668 8.12300 8.19211 8.51393 8.71601 8.85331 9.02102 9.11488 10.27627 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029626 B = 0.004660 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.881044 B = 6007.015295 C = 6122.567612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.161 4.161 3 C 0.215 3.785 4 N -0.881 5.881 5 C -0.208 4.208 6 C -0.075 4.075 7 C -0.180 4.180 8 C 0.219 3.781 9 N -0.718 5.718 10 C 0.215 3.785 11 C -0.284 4.284 12 C -0.068 4.068 13 C -0.254 4.254 14 C 0.139 3.861 15 C -0.467 4.467 16 H 0.077 0.923 17 C 0.079 3.921 18 N -0.793 5.793 19 Si 0.902 3.098 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.276 1.276 23 C -0.224 4.224 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.084 0.916 27 H 0.397 0.603 28 H 0.393 0.607 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.399 0.601 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.277 0.723 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.098 10.501 3.863 12.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.167 4.167 3 C 0.111 3.889 4 N -0.422 5.422 5 C -0.231 4.231 6 C -0.095 4.095 7 C -0.202 4.202 8 C 0.125 3.875 9 N -0.350 5.350 10 C 0.119 3.881 11 C -0.307 4.307 12 C -0.087 4.087 13 C -0.274 4.274 14 C 0.136 3.864 15 C -0.497 4.497 16 H 0.095 0.905 17 C -0.138 4.138 18 N -0.419 5.419 19 Si 0.727 3.273 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.202 1.202 23 C -0.248 4.248 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.226 0.774 28 H 0.221 0.779 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.235 0.765 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.035 10.591 4.006 12.831 hybrid contribution -0.483 -0.547 0.440 0.852 sum 5.552 10.045 4.446 12.308 Atomic orbital electron populations 1.20534 0.91136 1.03027 1.01287 1.19771 0.96268 0.91288 1.09379 1.17453 0.91012 0.85880 0.94537 1.42489 1.08979 1.04820 1.85899 1.20448 0.91854 0.98238 1.12544 1.20652 0.98999 0.91706 0.98104 1.21286 0.93802 0.98034 1.07084 1.17081 0.89629 0.85519 0.95240 1.41835 1.62775 1.21727 1.08616 1.17570 0.93295 0.93090 0.84158 1.19924 1.15675 1.02958 0.92122 1.20299 0.97258 0.95699 0.95423 1.20890 1.10507 0.98163 0.97880 1.17298 0.87760 0.91091 0.90262 1.19559 1.27987 1.04790 0.97322 0.90536 1.25850 0.93955 0.98902 0.95082 1.69874 1.30230 1.35082 1.06727 0.86372 0.78484 0.83154 0.79326 1.18458 1.19846 1.20160 1.20675 1.06889 0.97407 0.99822 0.92419 0.93159 0.89697 0.77400 0.77934 0.86831 0.86490 0.86412 0.76486 0.89445 0.89653 0.89356 0.91256 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 9.33 36.01 0.34 -1.33 16 2 C -0.16 -2.65 5.49 -104.22 -0.57 -3.22 16 3 C 0.22 3.04 6.73 -83.82 -0.56 2.48 16 4 N -0.88 -9.43 8.99 32.40 0.29 -9.14 16 5 C -0.21 -2.75 9.89 -39.33 -0.39 -3.13 16 6 C -0.08 -1.03 10.03 -39.64 -0.40 -1.43 16 7 C -0.18 -2.90 9.97 -39.34 -0.39 -3.29 16 8 C 0.22 3.89 4.47 -83.79 -0.37 3.52 16 9 N -0.72 -14.08 4.73 -8.47 -0.04 -14.12 16 10 C 0.21 4.99 5.43 -83.83 -0.46 4.54 16 11 C -0.28 -6.60 8.93 -39.08 -0.35 -6.95 16 12 C -0.07 -1.60 10.02 -39.69 -0.40 -1.99 16 13 C -0.25 -6.44 9.79 -38.83 -0.38 -6.82 16 14 C 0.14 3.76 5.55 -106.85 -0.59 3.17 16 15 C -0.47 -12.58 9.04 -37.74 -0.34 -12.92 16 16 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 17 C 0.08 2.01 5.11 -17.34 -0.09 1.92 16 18 N -0.79 -20.58 11.09 55.55 0.62 -19.97 16 19 Si 0.90 18.88 29.60 -169.99 -5.03 13.85 16 20 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 C -0.22 -5.80 8.53 -38.67 -0.33 -6.13 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 26 H 0.08 1.68 6.11 -51.93 -0.32 1.36 16 27 H 0.40 3.95 6.82 -40.82 -0.28 3.67 16 28 H 0.39 3.20 8.84 -40.82 -0.36 2.84 16 29 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.40 7.37 8.83 -40.82 -0.36 7.01 16 33 H 0.09 1.97 6.71 -52.49 -0.35 1.62 16 34 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 35 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 36 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 37 H 0.11 3.05 6.29 -52.48 -0.33 2.72 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -28.68 308.82 -9.22 -37.91 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -4.43 Total: 18.41 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: -5.29 Total: -31.60 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.87 Total: -43.22 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.68 -9.22 -37.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313482233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.196 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds