Wall clock time and date at job start Mon Mar 30 2020 07:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38788 * 120.07264 * 2 1 4 4 N 1.39664 * 120.04124 * 359.97438 * 3 2 1 5 5 C 1.38961 * 119.92461 * 180.02562 * 3 2 1 6 6 C 1.38188 * 120.07278 * 0.02562 * 5 3 2 7 7 C 1.38126 * 120.15172 * 359.73965 * 6 5 3 8 8 C 1.38771 * 120.07243 * 180.02562 * 2 1 3 9 9 N 1.39709 * 120.03777 * 359.96592 * 8 2 1 10 10 C 1.39718 * 120.00442 * 80.55553 * 9 8 2 11 11 C 1.39347 * 119.95207 * 0.26848 * 10 9 8 12 12 C 1.38471 * 120.42341 * 179.72633 * 11 10 9 13 13 C 1.37701 * 120.32709 * 0.54631 * 12 11 10 14 14 C 1.40752 * 119.89195 * 359.73320 * 13 12 11 15 15 C 1.41406 * 120.20742 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99984 * 25.83326 * 15 14 13 17 17 C 1.39927 * 120.00335 * 205.83932 * 15 14 13 18 18 N 1.30838 * 119.99796 * 18.54593 * 17 15 14 19 19 Si 1.86796 * 120.00284 * 198.54569 * 17 15 14 20 20 H 1.48499 * 109.47312 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.46897 * 120.00225 * 19 17 15 22 22 H 1.48503 * 109.47191 * 239.99817 * 19 17 15 23 23 C 1.38294 * 119.95393 * 180.54639 * 10 9 8 24 24 H 1.08998 * 109.46998 * 269.98315 * 1 2 3 25 25 H 1.08997 * 109.46684 * 29.98139 * 1 2 3 26 26 H 1.08995 * 109.47081 * 149.97798 * 1 2 3 27 27 H 0.97002 * 119.99948 * 359.97438 * 4 3 2 28 28 H 0.96997 * 120.00537 * 180.02562 * 4 3 2 29 29 H 1.07992 * 119.96323 * 179.97438 * 5 3 2 30 30 H 1.08002 * 119.92287 * 179.97438 * 6 5 3 31 31 H 1.07996 * 119.96264 * 180.27273 * 7 6 5 32 32 H 0.97005 * 119.99710 * 260.27681 * 9 8 2 33 33 H 1.08001 * 119.78941 * 0.02562 * 11 10 9 34 34 H 1.08004 * 119.84289 * 180.28037 * 12 11 10 35 35 H 1.07996 * 120.05215 * 179.74705 * 13 12 11 36 36 H 0.97002 * 119.99862 * 180.02562 * 18 17 15 37 37 H 1.08008 * 120.16289 * 359.97149 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2025 1.2011 0.0000 4 7 1.5066 2.4120 -0.0005 5 6 3.5921 1.1975 -0.0005 6 6 4.2815 -0.0002 -0.0016 7 6 3.5925 -1.1973 0.0033 8 6 2.2024 -1.2009 -0.0005 9 7 1.5062 -2.4122 -0.0004 10 6 0.9853 -2.9188 -1.1937 11 6 1.1656 -2.2179 -2.3845 12 6 0.6583 -2.7138 -3.5737 13 6 -0.0400 -3.9005 -3.5906 14 6 -0.2351 -4.6167 -2.3947 15 6 -0.9517 -5.8357 -2.4043 16 1 -0.9917 -6.4315 -3.3041 17 6 -1.6092 -6.2699 -1.2479 18 7 -1.8767 -5.4204 -0.2895 19 14 -2.1049 -8.0623 -1.0726 20 1 -1.6918 -8.8112 -2.2866 21 1 -1.4394 -8.6456 0.1199 22 1 -3.5783 -8.1550 -0.9120 23 6 0.2866 -4.1122 -1.1905 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3632 0.8901 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 0.5366 2.4139 -0.0013 28 1 1.9932 3.2511 -0.0009 29 1 4.1339 2.1317 -0.0010 30 1 5.3615 -0.0001 -0.0024 31 1 4.1343 -2.1315 0.0069 32 1 1.3880 -2.9035 0.8277 33 1 1.7085 -1.2843 -2.3807 34 1 0.8075 -2.1651 -4.4919 35 1 -0.4372 -4.2811 -4.5199 36 1 -2.3322 -5.7215 0.5123 37 1 0.1427 -4.6544 -0.2675 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313482233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:34 Heat of formation + Delta-G solvation = 28.320444 kcal Electronic energy + Delta-G solvation = -19579.116165 eV Core-core repulsion = 16705.523561 eV Total energy + Delta-G solvation = -2873.592604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93697 -39.28804 -36.77984 -35.36854 -34.78601 -32.53788 -31.36663 -30.26527 -28.49391 -27.29356 -27.09121 -23.32624 -22.79222 -22.09848 -21.52413 -19.22906 -18.14819 -17.92265 -17.61810 -16.51456 -16.45167 -16.30250 -15.72215 -15.33524 -14.85380 -14.61359 -14.44806 -14.06843 -14.05573 -13.60587 -13.28837 -13.16115 -12.98206 -12.76757 -12.55971 -12.26978 -12.21388 -12.02489 -11.58803 -11.39727 -11.31754 -11.12172 -10.66178 -9.43364 -9.25227 -8.63111 -8.32711 -8.01876 -6.31257 0.48046 0.73941 1.07519 1.30800 1.39548 1.53946 1.57215 2.23997 2.70119 2.82303 2.96623 3.16103 3.84669 4.07611 4.17236 4.28702 4.47089 4.66354 4.73229 4.76461 4.78603 4.84677 4.87322 5.01771 5.20727 5.28628 5.36964 5.41175 5.44888 5.54980 5.67133 5.82883 5.89869 6.01135 6.13500 6.19806 6.29925 6.58117 6.64937 6.91096 7.04511 7.05399 7.13538 7.20306 8.38999 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029626 B = 0.004660 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.881044 B = 6007.015295 C = 6122.567612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.181 4.181 3 C 0.218 3.782 4 N -0.867 5.867 5 C -0.202 4.202 6 C -0.068 4.068 7 C -0.197 4.197 8 C 0.188 3.812 9 N -0.711 5.711 10 C 0.229 3.771 11 C -0.285 4.285 12 C -0.065 4.065 13 C -0.280 4.280 14 C 0.111 3.889 15 C -0.505 4.505 16 H 0.072 0.928 17 C 0.040 3.960 18 N -0.822 5.822 19 Si 0.978 3.022 20 H -0.260 1.260 21 H -0.265 1.265 22 H -0.266 1.266 23 C -0.251 4.251 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.401 0.599 28 H 0.409 0.591 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.113 0.887 32 H 0.400 0.600 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.285 0.715 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 12.336 4.261 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.188 4.188 3 C 0.112 3.888 4 N -0.408 5.408 5 C -0.225 4.225 6 C -0.087 4.087 7 C -0.219 4.219 8 C 0.095 3.905 9 N -0.340 5.340 10 C 0.130 3.870 11 C -0.308 4.308 12 C -0.083 4.083 13 C -0.300 4.300 14 C 0.108 3.892 15 C -0.534 4.534 16 H 0.090 0.910 17 C -0.175 4.175 18 N -0.448 5.448 19 Si 0.799 3.201 20 H -0.183 1.183 21 H -0.190 1.190 22 H -0.191 1.191 23 C -0.275 4.275 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.231 0.769 28 H 0.239 0.761 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.131 0.869 32 H 0.236 0.764 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.203 12.494 4.421 15.084 hybrid contribution -0.759 -0.898 0.362 1.231 sum 6.444 11.595 4.783 14.102 Atomic orbital electron populations 1.20425 0.91586 1.01949 1.01342 1.19784 0.96129 0.91929 1.10915 1.17555 0.91682 0.86042 0.93549 1.42455 1.09357 1.04453 1.84580 1.20855 0.91513 0.99469 1.10655 1.20999 1.00574 0.90838 0.96293 1.21338 0.93118 0.99152 1.08310 1.17335 0.90388 0.84880 0.97912 1.41778 1.62212 1.22540 1.07484 1.17592 0.91763 0.91997 0.85632 1.20072 1.15529 1.03191 0.91966 1.20617 0.95922 0.95018 0.96775 1.21031 1.12083 0.99282 0.97631 1.17672 0.88334 0.91809 0.91346 1.19800 1.29674 1.05641 0.98310 0.90966 1.26678 0.93355 1.03294 0.94173 1.69927 1.30477 1.37123 1.07292 0.85237 0.78464 0.77100 0.79341 1.18318 1.18953 1.19081 1.20583 1.08990 0.98908 0.99009 0.91873 0.91091 0.93800 0.76878 0.76082 0.83431 0.83414 0.86881 0.76426 0.88327 0.86683 0.89011 0.90439 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.08 9.33 71.24 0.66 -2.42 16 2 C -0.18 -5.74 5.49 -19.60 -0.11 -5.85 16 3 C 0.22 5.50 6.73 38.20 0.26 5.76 16 4 N -0.87 -15.49 8.99 -51.42 -0.46 -15.95 16 5 C -0.20 -4.52 9.89 22.43 0.22 -4.29 16 6 C -0.07 -1.64 10.03 22.23 0.22 -1.42 16 7 C -0.20 -6.10 9.97 22.43 0.22 -5.88 16 8 C 0.19 6.60 4.47 38.20 0.17 6.77 16 9 N -0.71 -28.65 4.73 -180.73 -0.86 -29.51 16 10 C 0.23 10.96 5.43 38.16 0.21 11.16 16 11 C -0.28 -13.31 8.93 22.59 0.20 -13.11 16 12 C -0.06 -3.05 10.02 22.20 0.22 -2.82 16 13 C -0.28 -14.64 9.79 22.76 0.22 -14.41 16 14 C 0.11 6.31 5.55 -21.31 -0.12 6.19 16 15 C -0.50 -28.38 9.04 23.46 0.21 -28.17 16 16 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 17 C 0.04 2.08 5.11 85.25 0.44 2.51 16 18 N -0.82 -44.08 11.09 21.82 0.24 -43.84 16 19 Si 0.98 39.39 29.60 68.60 2.03 41.42 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 22 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 23 C -0.25 -13.62 8.53 22.86 0.19 -13.43 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.07 1.90 6.54 -2.39 -0.02 1.88 16 26 H 0.04 1.77 6.11 -2.39 -0.01 1.75 16 27 H 0.40 6.75 6.82 -92.71 -0.63 6.11 16 28 H 0.41 4.93 8.84 -92.71 -0.82 4.11 16 29 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.11 3.50 8.06 -2.91 -0.02 3.48 16 32 H 0.40 15.50 8.83 -92.70 -0.82 14.68 16 33 H 0.10 4.36 6.71 -2.91 -0.02 4.34 16 34 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 35 H 0.09 4.58 8.06 -2.91 -0.02 4.55 16 36 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 37 H 0.10 5.56 6.29 -2.91 -0.02 5.54 16 Total: -1.00 -64.20 308.82 3.04 -61.16 By element: Atomic # 1 Polarization: 47.28 SS G_CDS: -1.15 Total: 46.13 kcal Atomic # 6 Polarization: -62.65 SS G_CDS: 3.23 Total: -59.42 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -1.08 Total: -89.30 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -64.20 3.04 -61.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313482233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.481 kcal (2) G-P(sol) polarization free energy of solvation -64.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds