Wall clock time and date at job start Mon Mar 30 2020 07:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38180 * 119.92620 * 2 1 4 4 C 1.38964 * 120.07857 * 179.97438 * 3 2 1 5 5 N 1.39665 * 120.03723 * 179.97438 * 4 3 2 6 6 C 1.38788 * 119.92116 * 359.97438 * 4 3 2 7 7 C 1.38768 * 119.85567 * 359.97438 * 6 4 3 8 8 N 1.39707 * 120.03853 * 179.97438 * 7 6 4 9 9 C 1.39729 * 120.00093 * 334.39833 * 8 7 6 10 10 C 1.39349 * 119.95164 * 327.65598 * 9 8 7 11 11 C 1.38474 * 120.42074 * 179.76080 * 10 9 8 12 12 C 1.37698 * 120.32580 * 0.51266 * 11 10 9 13 13 C 1.40750 * 119.89424 * 359.74714 * 12 11 10 14 14 C 1.41412 * 120.20579 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00173 * 25.45233 * 14 13 12 16 16 C 1.39925 * 120.00074 * 205.45177 * 14 13 12 17 17 N 1.30836 * 120.00017 * 15.70474 * 16 14 13 18 18 Si 1.86801 * 120.00029 * 195.71014 * 16 14 13 19 19 H 1.48500 * 109.46867 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47161 * 119.99805 * 18 16 14 21 21 H 1.48499 * 109.47067 * 240.00040 * 18 16 14 22 22 C 1.38295 * 119.95069 * 147.93014 * 9 8 7 23 23 C 1.38128 * 119.92438 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46844 * 90.00129 * 1 2 3 25 25 H 1.08996 * 109.47212 * 210.00420 * 1 2 3 26 26 H 1.08996 * 109.47108 * 330.00651 * 1 2 3 27 27 H 1.08002 * 119.96189 * 0.26973 * 3 2 1 28 28 H 0.97000 * 119.99928 * 359.97438 * 5 4 3 29 29 H 0.97000 * 120.00191 * 179.97438 * 5 4 3 30 30 H 1.08002 * 120.06797 * 179.97438 * 6 4 3 31 31 H 0.96992 * 120.00122 * 154.40267 * 8 7 6 32 32 H 1.08000 * 119.79316 * 359.97438 * 10 9 8 33 33 H 1.08006 * 119.83812 * 180.23612 * 11 10 9 34 34 H 1.08000 * 120.04955 * 179.76656 * 12 11 10 35 35 H 0.96998 * 119.99933 * 180.02562 * 17 16 14 36 36 H 1.07998 * 120.16288 * 359.95138 * 22 9 8 37 37 H 1.07993 * 119.96574 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1976 0.0000 4 6 3.5860 1.2013 0.0005 5 7 4.2819 2.4122 0.0000 6 6 4.2815 0.0002 0.0016 7 6 3.5861 -1.2007 0.0027 8 7 4.2824 -2.4119 0.0032 9 6 5.5764 -2.4742 -0.5201 10 6 5.9370 -1.6497 -1.5841 11 6 7.2182 -1.6998 -2.1070 12 6 8.1475 -2.5733 -1.5877 13 6 7.7962 -3.4160 -0.5165 14 6 8.7454 -4.3151 0.0223 15 1 9.8008 -4.1040 -0.0676 16 6 8.3174 -5.4781 0.6719 17 7 7.0868 -5.8962 0.5216 18 14 9.5030 -6.4338 1.7538 19 1 10.8248 -5.7572 1.7576 20 1 8.9719 -6.4916 3.1394 21 1 9.6548 -7.8128 1.2240 22 6 6.4958 -3.3580 0.0149 23 6 2.1960 -1.1971 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6545 2.1318 0.0044 28 1 3.7952 3.2513 -0.0011 29 1 5.2519 2.4142 0.0007 30 1 5.3615 0.0003 0.0016 31 1 3.8674 -3.2097 0.3668 32 1 5.2137 -0.9648 -2.0013 33 1 7.4887 -1.0538 -2.9293 34 1 9.1443 -2.6113 -2.0015 35 1 6.7900 -6.7023 0.9722 36 1 6.2164 -4.0000 0.8371 37 1 1.6543 -2.1313 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313482285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:38 Heat of formation + Delta-G solvation = 35.942543 kcal Electronic energy + Delta-G solvation = -19229.002185 eV Core-core repulsion = 16355.740099 eV Total energy + Delta-G solvation = -2873.262085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.47720 -37.69129 -35.32711 -34.34935 -33.35711 -30.77272 -29.58106 -28.76413 -26.93702 -26.58750 -25.19224 -21.84362 -21.39932 -20.71442 -19.75972 -17.45829 -16.81028 -16.41163 -15.71676 -15.58279 -14.85198 -14.67882 -14.30805 -13.89178 -13.56739 -13.13102 -12.87747 -12.78042 -12.40853 -12.29759 -11.94988 -11.69660 -11.31654 -11.23995 -11.10667 -11.02179 -10.79020 -10.51997 -10.35208 -9.73433 -9.65213 -9.32987 -9.12238 -7.91602 -7.39613 -7.23174 -6.80784 -6.31992 -4.38884 1.89000 2.05884 2.78934 3.06770 3.08267 3.12532 3.22610 3.93070 3.99484 4.26317 4.32512 4.65693 5.13861 5.40745 5.60448 5.67933 5.71894 5.75834 5.90834 6.02013 6.11515 6.21549 6.26891 6.55464 6.68986 6.77869 6.90674 6.98489 7.01069 7.05484 7.19118 7.30626 7.36574 7.72475 7.81085 7.89444 7.98974 8.01427 8.08412 8.38449 8.51812 8.70695 8.90061 8.97137 10.19087 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026288 B = 0.004507 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.866778 B = 6210.914046 C = 6769.018971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.013 4.013 3 C -0.251 4.251 4 C 0.245 3.755 5 N -0.881 5.881 6 C -0.248 4.248 7 C 0.255 3.745 8 N -0.684 5.684 9 C 0.173 3.827 10 C -0.263 4.263 11 C -0.077 4.077 12 C -0.240 4.240 13 C 0.127 3.873 14 C -0.462 4.462 15 H 0.078 0.922 16 C 0.076 3.924 17 N -0.797 5.797 18 Si 0.907 3.093 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.275 1.275 22 C -0.196 4.196 23 C -0.240 4.240 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.109 0.891 28 H 0.393 0.607 29 H 0.397 0.603 30 H 0.129 0.871 31 H 0.402 0.598 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.278 0.722 36 H 0.122 0.878 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.328 9.285 1.007 12.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.015 4.015 3 C -0.275 4.275 4 C 0.141 3.859 5 N -0.420 5.420 6 C -0.275 4.275 7 C 0.152 3.848 8 N -0.304 5.304 9 C 0.079 3.921 10 C -0.285 4.285 11 C -0.096 4.096 12 C -0.260 4.260 13 C 0.124 3.876 14 C -0.492 4.492 15 H 0.096 0.904 16 C -0.141 4.141 17 N -0.422 5.422 18 Si 0.732 3.268 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.200 1.200 22 C -0.218 4.218 23 C -0.264 4.264 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.127 0.873 28 H 0.220 0.780 29 H 0.225 0.775 30 H 0.147 0.853 31 H 0.237 0.763 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.140 0.860 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.394 9.067 1.016 12.397 hybrid contribution 0.540 -0.571 0.550 0.959 sum -7.854 8.496 1.566 11.675 Atomic orbital electron populations 1.20751 0.91904 1.02166 1.01913 1.19224 0.94863 0.92167 0.95204 1.20094 0.91768 0.97346 1.18273 1.17452 0.90900 0.85897 0.91693 1.42425 1.08884 1.04923 1.85730 1.20362 1.00209 0.89800 1.17119 1.17479 0.90298 0.85946 0.91066 1.42254 1.14741 1.08247 1.65179 1.17598 0.83251 0.97886 0.93334 1.20217 0.97477 1.08292 1.02490 1.20354 0.93422 0.97770 0.98091 1.20975 0.98951 1.04401 1.01654 1.17380 0.91798 0.89822 0.88589 1.19599 0.94559 1.03573 1.31484 0.90377 1.25889 0.95638 0.97484 0.95086 1.69831 1.17441 1.20498 1.34461 0.86283 0.81354 0.79255 0.79954 1.18418 1.19778 1.20021 1.21078 0.93849 1.03535 1.03312 1.20329 0.92080 0.97585 1.16418 0.91457 0.91814 0.91994 0.87298 0.77990 0.77525 0.85320 0.76275 0.88791 0.89278 0.89041 0.91070 0.86042 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.00 0.36 -0.83 16 2 C -0.01 -0.19 5.87 -104.68 -0.61 -0.80 16 3 C -0.25 -3.59 9.54 -39.33 -0.38 -3.97 16 4 C 0.25 3.76 6.75 -83.82 -0.57 3.20 16 5 N -0.88 -10.40 9.09 32.40 0.29 -10.11 16 6 C -0.25 -4.48 7.73 -39.18 -0.30 -4.79 16 7 C 0.26 4.72 6.04 -83.79 -0.51 4.21 16 8 N -0.68 -13.72 5.46 -8.47 -0.05 -13.77 16 9 C 0.17 4.03 5.88 -83.82 -0.49 3.54 16 10 C -0.26 -5.97 7.77 -39.08 -0.30 -6.27 16 11 C -0.08 -1.75 10.02 -39.69 -0.40 -2.15 16 12 C -0.24 -5.89 9.79 -38.83 -0.38 -6.27 16 13 C 0.13 3.38 5.57 -106.85 -0.60 2.78 16 14 C -0.46 -12.22 9.06 -37.74 -0.34 -12.56 16 15 H 0.08 1.99 7.89 -52.48 -0.41 1.58 16 16 C 0.08 1.90 5.18 -17.34 -0.09 1.81 16 17 N -0.80 -20.39 10.90 55.55 0.61 -19.78 16 18 Si 0.91 18.62 29.59 -169.99 -5.03 13.59 16 19 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 C -0.20 -5.02 8.59 -38.67 -0.33 -5.35 16 23 C -0.24 -3.90 9.59 -39.34 -0.38 -4.28 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 26 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 27 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.39 3.60 8.84 -40.82 -0.36 3.24 16 29 H 0.40 4.39 8.84 -40.82 -0.36 4.03 16 30 H 0.13 2.53 6.35 -52.49 -0.33 2.20 16 31 H 0.40 7.49 8.89 -40.82 -0.36 7.12 16 32 H 0.09 2.05 6.61 -52.49 -0.35 1.70 16 33 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 36 H 0.12 3.22 6.15 -52.49 -0.32 2.90 16 37 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 312.15 15.07 4.70 4.70 Total: -1.00 -28.18 312.15 -9.38 -37.56 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -4.59 Total: 19.53 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -5.32 Total: -31.73 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.85 Total: -43.66 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.18 -9.38 -37.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313482285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.505 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds