Wall clock time and date at job start Mon Mar 30 2020 07:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38180 * 119.92620 * 2 1 4 4 C 1.38964 * 120.07857 * 179.97438 * 3 2 1 5 5 N 1.39665 * 120.03723 * 179.97438 * 4 3 2 6 6 C 1.38788 * 119.92116 * 359.97438 * 4 3 2 7 7 C 1.38768 * 119.85567 * 359.97438 * 6 4 3 8 8 N 1.39707 * 120.03853 * 179.97438 * 7 6 4 9 9 C 1.39729 * 120.00093 * 334.39833 * 8 7 6 10 10 C 1.39349 * 119.95164 * 327.65598 * 9 8 7 11 11 C 1.38474 * 120.42074 * 179.76080 * 10 9 8 12 12 C 1.37698 * 120.32580 * 0.51266 * 11 10 9 13 13 C 1.40750 * 119.89424 * 359.74714 * 12 11 10 14 14 C 1.41412 * 120.20579 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00173 * 25.45233 * 14 13 12 16 16 C 1.39925 * 120.00074 * 205.45177 * 14 13 12 17 17 N 1.30836 * 120.00017 * 15.70474 * 16 14 13 18 18 Si 1.86801 * 120.00029 * 195.71014 * 16 14 13 19 19 H 1.48500 * 109.46867 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47161 * 119.99805 * 18 16 14 21 21 H 1.48499 * 109.47067 * 240.00040 * 18 16 14 22 22 C 1.38295 * 119.95069 * 147.93014 * 9 8 7 23 23 C 1.38128 * 119.92438 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46844 * 90.00129 * 1 2 3 25 25 H 1.08996 * 109.47212 * 210.00420 * 1 2 3 26 26 H 1.08996 * 109.47108 * 330.00651 * 1 2 3 27 27 H 1.08002 * 119.96189 * 0.26973 * 3 2 1 28 28 H 0.97000 * 119.99928 * 359.97438 * 5 4 3 29 29 H 0.97000 * 120.00191 * 179.97438 * 5 4 3 30 30 H 1.08002 * 120.06797 * 179.97438 * 6 4 3 31 31 H 0.96992 * 120.00122 * 154.40267 * 8 7 6 32 32 H 1.08000 * 119.79316 * 359.97438 * 10 9 8 33 33 H 1.08006 * 119.83812 * 180.23612 * 11 10 9 34 34 H 1.08000 * 120.04955 * 179.76656 * 12 11 10 35 35 H 0.96998 * 119.99933 * 180.02562 * 17 16 14 36 36 H 1.07998 * 120.16288 * 359.95138 * 22 9 8 37 37 H 1.07993 * 119.96574 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1976 0.0000 4 6 3.5860 1.2013 0.0005 5 7 4.2819 2.4122 0.0000 6 6 4.2815 0.0002 0.0016 7 6 3.5861 -1.2007 0.0027 8 7 4.2824 -2.4119 0.0032 9 6 5.5764 -2.4742 -0.5201 10 6 5.9370 -1.6497 -1.5841 11 6 7.2182 -1.6998 -2.1070 12 6 8.1475 -2.5733 -1.5877 13 6 7.7962 -3.4160 -0.5165 14 6 8.7454 -4.3151 0.0223 15 1 9.8008 -4.1040 -0.0676 16 6 8.3174 -5.4781 0.6719 17 7 7.0868 -5.8962 0.5216 18 14 9.5030 -6.4338 1.7538 19 1 10.8248 -5.7572 1.7576 20 1 8.9719 -6.4916 3.1394 21 1 9.6548 -7.8128 1.2240 22 6 6.4958 -3.3580 0.0149 23 6 2.1960 -1.1971 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6545 2.1318 0.0044 28 1 3.7952 3.2513 -0.0011 29 1 5.2519 2.4142 0.0007 30 1 5.3615 0.0003 0.0016 31 1 3.8674 -3.2097 0.3668 32 1 5.2137 -0.9648 -2.0013 33 1 7.4887 -1.0538 -2.9293 34 1 9.1443 -2.6113 -2.0015 35 1 6.7900 -6.7023 0.9722 36 1 6.2164 -4.0000 0.8371 37 1 1.6543 -2.1313 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313482285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:38 Heat of formation + Delta-G solvation = 20.364498 kcal Electronic energy + Delta-G solvation = -19229.677699 eV Core-core repulsion = 16355.740099 eV Total energy + Delta-G solvation = -2873.937600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.85027 -39.34358 -36.86133 -35.59556 -35.08809 -32.11978 -31.46812 -30.14413 -28.41297 -27.77793 -27.00995 -23.32840 -22.99175 -22.21654 -21.32799 -19.21707 -18.20246 -17.75783 -17.20638 -16.99567 -16.42598 -16.32120 -15.78910 -15.28468 -14.80246 -14.66859 -14.44279 -14.14187 -13.99846 -13.55693 -13.34252 -13.06255 -12.84123 -12.81171 -12.69229 -12.38666 -12.20813 -12.14535 -11.89640 -11.54548 -11.42448 -11.06292 -10.58956 -9.44867 -9.30425 -8.67205 -8.41455 -7.93626 -6.36822 0.57368 0.78536 1.02366 1.27814 1.38175 1.52339 1.53727 2.21066 2.58766 2.74204 3.07632 3.14902 3.75395 4.05925 4.39702 4.44735 4.51729 4.59000 4.70147 4.76316 4.80607 4.93624 4.93900 5.04783 5.14866 5.22341 5.25053 5.39058 5.40887 5.53904 5.66578 5.84374 5.88052 5.98038 6.08892 6.12755 6.23696 6.50276 6.68497 6.85538 6.93494 6.97079 7.09487 7.10397 8.34602 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026288 B = 0.004507 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.866778 B = 6210.914046 C = 6769.018971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.011 4.011 3 C -0.248 4.248 4 C 0.246 3.754 5 N -0.867 5.867 6 C -0.272 4.272 7 C 0.229 3.771 8 N -0.687 5.687 9 C 0.183 3.817 10 C -0.262 4.262 11 C -0.073 4.073 12 C -0.261 4.261 13 C 0.099 3.901 14 C -0.499 4.499 15 H 0.076 0.924 16 C 0.036 3.964 17 N -0.826 5.826 18 Si 0.981 3.019 19 H -0.258 1.258 20 H -0.266 1.266 21 H -0.265 1.265 22 C -0.223 4.223 23 C -0.250 4.250 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.140 0.860 28 H 0.409 0.591 29 H 0.401 0.599 30 H 0.105 0.895 31 H 0.405 0.595 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.286 0.714 36 H 0.104 0.896 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.868 10.795 1.100 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.012 4.012 3 C -0.272 4.272 4 C 0.139 3.861 5 N -0.407 5.407 6 C -0.299 4.299 7 C 0.129 3.871 8 N -0.309 5.309 9 C 0.088 3.912 10 C -0.284 4.284 11 C -0.091 4.091 12 C -0.281 4.281 13 C 0.096 3.904 14 C -0.529 4.529 15 H 0.094 0.906 16 C -0.179 4.179 17 N -0.452 5.452 18 Si 0.802 3.198 19 H -0.182 1.182 20 H -0.191 1.191 21 H -0.190 1.190 22 C -0.246 4.246 23 C -0.274 4.274 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.158 0.842 28 H 0.239 0.761 29 H 0.229 0.771 30 H 0.123 0.877 31 H 0.240 0.760 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.966 10.644 1.104 14.623 hybrid contribution 0.857 -0.853 0.483 1.302 sum -9.109 9.790 1.587 13.466 Atomic orbital electron populations 1.20822 0.88985 1.03591 1.03130 1.19692 0.96974 0.91379 0.93184 1.20492 0.91326 0.98686 1.16647 1.17563 0.91633 0.86018 0.90848 1.42396 1.09249 1.04593 1.84455 1.20286 0.99183 0.91048 1.19336 1.17748 0.91305 0.85227 0.92868 1.42187 1.13781 1.09328 1.65626 1.17661 0.84119 0.96626 0.92831 1.20383 0.97797 1.08142 1.02066 1.20681 0.92881 0.97222 0.98338 1.21141 0.99874 1.05158 1.01910 1.17754 0.92457 0.90657 0.89493 1.19852 0.94551 1.04878 1.33619 0.90612 1.26732 0.97417 0.97982 0.95741 1.69890 1.19075 1.21153 1.35063 0.85171 0.78859 0.77818 0.77928 1.18166 1.19054 1.19007 1.20986 0.94575 1.05055 1.03976 1.20528 0.91152 0.99030 1.16667 0.90167 0.91072 0.90004 0.84247 0.76128 0.77082 0.87713 0.75988 0.87710 0.86063 0.88376 0.90310 0.87785 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 10.01 71.24 0.71 -1.22 16 2 C -0.01 -0.28 5.87 -19.91 -0.12 -0.40 16 3 C -0.25 -6.28 9.54 22.43 0.21 -6.07 16 4 C 0.25 7.08 6.75 38.20 0.26 7.34 16 5 N -0.87 -18.50 9.09 -51.42 -0.47 -18.97 16 6 C -0.27 -9.78 7.73 22.53 0.17 -9.60 16 7 C 0.23 8.49 6.04 38.20 0.23 8.72 16 8 N -0.69 -28.44 5.46 -180.72 -0.99 -29.43 16 9 C 0.18 8.81 5.88 38.16 0.22 9.03 16 10 C -0.26 -12.01 7.77 22.59 0.18 -11.83 16 11 C -0.07 -3.29 10.02 22.20 0.22 -3.06 16 12 C -0.26 -13.15 9.79 22.76 0.22 -12.92 16 13 C 0.10 5.51 5.57 -21.31 -0.12 5.39 16 14 C -0.50 -27.49 9.06 23.46 0.21 -27.27 16 15 H 0.08 4.03 7.89 -2.91 -0.02 4.00 16 16 C 0.04 1.83 5.18 85.25 0.44 2.27 16 17 N -0.83 -43.68 10.90 21.82 0.24 -43.44 16 18 Si 0.98 38.82 29.59 68.60 2.03 40.85 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 20 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 22 C -0.22 -12.04 8.59 22.86 0.20 -11.84 16 23 C -0.25 -7.82 9.59 22.43 0.22 -7.61 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 26 H 0.08 1.15 8.08 -2.39 -0.02 1.14 16 27 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 28 H 0.41 6.18 8.84 -92.71 -0.82 5.36 16 29 H 0.40 8.23 8.84 -92.71 -0.82 7.41 16 30 H 0.10 4.22 6.35 -2.91 -0.02 4.20 16 31 H 0.40 15.73 8.89 -92.71 -0.82 14.91 16 32 H 0.10 4.54 6.61 -2.91 -0.02 4.52 16 33 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 34 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 35 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 36 H 0.10 5.87 6.15 -2.91 -0.02 5.85 16 37 H 0.12 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -62.79 312.15 2.74 -60.05 By element: Atomic # 1 Polarization: 51.35 SS G_CDS: -1.34 Total: 50.01 kcal Atomic # 6 Polarization: -62.33 SS G_CDS: 3.26 Total: -59.07 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -1.22 Total: -91.84 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -62.79 2.74 -60.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313482285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.419 kcal (2) G-P(sol) polarization free energy of solvation -62.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds