Wall clock time and date at job start Mon Mar 30 2020 07:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99852 * 2 1 4 4 H 1.48506 * 109.47274 * 270.97876 * 3 2 1 5 5 H 1.48499 * 109.47546 * 30.97704 * 3 2 1 6 6 H 1.48502 * 109.47046 * 150.98197 * 3 2 1 7 7 C 1.37873 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00624 * 358.21780 * 7 2 1 9 9 C 1.50707 * 119.99816 * 178.21191 * 7 2 1 10 10 C 1.52999 * 115.54571 * 91.69141 * 9 7 2 11 11 N 1.46499 * 109.47393 * 320.44683 * 10 9 7 12 12 C 1.31177 * 120.00349 * 114.29943 * 11 10 9 13 13 C 1.46348 * 119.75317 * 353.11906 * 12 11 10 14 14 C 1.35094 * 119.67161 * 179.74839 * 13 12 11 15 15 C 1.46660 * 119.18482 * 0.52505 * 14 13 12 16 16 C 1.39930 * 120.45721 * 179.70245 * 15 14 13 17 17 C 1.37634 * 119.75214 * 180.02562 * 16 15 14 18 18 C 1.38747 * 120.38980 * 0.02562 * 17 16 15 19 19 C 1.37849 * 120.57876 * 359.97438 * 18 17 16 20 20 C 1.39100 * 119.99104 * 0.02562 * 19 18 17 21 21 N 1.37432 * 119.75651 * 173.39486 * 12 11 10 22 22 H 0.96997 * 119.65503 * 359.95473 * 21 12 11 23 23 C 1.52996 * 117.50328 * 237.36338 * 9 7 2 24 24 C 1.52999 * 60.03194 * 107.49927 * 23 9 7 25 25 H 0.96994 * 120.00080 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47103 * 80.44692 * 10 9 7 27 27 H 1.08997 * 109.47132 * 200.44034 * 10 9 7 28 28 H 1.07997 * 120.16246 * 0.02562 * 13 12 11 29 29 H 1.08001 * 120.40867 * 180.24864 * 14 13 12 30 30 H 1.08001 * 120.12450 * 0.02562 * 16 15 14 31 31 H 1.08001 * 119.80694 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.71257 * 179.97438 * 18 17 16 33 33 H 1.07995 * 119.99953 * 180.02562 * 19 18 17 34 34 H 1.08999 * 117.50064 * 215.00467 * 23 9 7 35 35 H 1.09007 * 117.49642 * 359.97438 * 23 9 7 36 36 H 1.09003 * 117.49693 * 107.49939 * 24 23 9 37 37 H 1.09001 * 117.50549 * 252.52127 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4759 2.0584 -1.3999 5 1 1.4571 2.6466 0.7206 6 1 3.5569 1.4342 0.6792 7 6 2.0045 -1.1940 -0.0005 8 1 1.4649 -2.1292 0.0281 9 6 3.5110 -1.1944 -0.0413 10 6 4.2079 -1.2144 1.3207 11 7 3.4828 -0.3477 2.2530 12 6 2.8783 -0.8660 3.2955 13 6 2.8021 -2.3202 3.4421 14 6 2.1836 -2.8522 4.5189 15 6 1.5889 -1.9571 5.5169 16 6 0.9366 -2.4795 6.6392 17 6 0.3831 -1.6261 7.5663 18 6 0.4679 -0.2520 7.3941 19 6 1.1071 0.2787 6.2941 20 6 1.6735 -0.5654 5.3446 21 7 2.3163 -0.0397 4.2389 22 1 2.3710 0.9224 4.1279 23 6 4.1866 -1.9436 -1.1915 24 6 4.1880 -0.4138 -1.1706 25 1 -0.4850 0.8400 0.0004 26 1 4.2209 -2.2335 1.7073 27 1 5.2308 -0.8545 1.2107 28 1 3.2420 -2.9646 2.6955 29 1 2.1240 -3.9236 4.6411 30 1 0.8676 -3.5484 6.7773 31 1 -0.1202 -2.0284 8.4331 32 1 0.0294 0.4076 8.1283 33 1 1.1680 1.3498 6.1696 34 1 5.1274 -2.4509 -0.9780 35 1 3.5413 -2.4368 -1.9186 36 1 5.1299 0.0855 -0.9433 37 1 3.5436 0.1000 -1.8839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362365088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:18 Heat of formation + Delta-G solvation = 103.435596 kcal Electronic energy + Delta-G solvation = -19879.369724 eV Core-core repulsion = 17009.034357 eV Total energy + Delta-G solvation = -2870.335367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13812 -37.57104 -36.49294 -33.65932 -33.08991 -31.93030 -29.86956 -28.92021 -26.06037 -25.06264 -23.27099 -22.50849 -21.75844 -21.31344 -18.91866 -17.91111 -17.60129 -16.21897 -16.05940 -15.33547 -14.75676 -14.54217 -14.25702 -14.04357 -13.79427 -13.70385 -13.09637 -12.72942 -12.51139 -12.37526 -11.80873 -11.72233 -11.28675 -11.01348 -10.94267 -10.64400 -10.32475 -10.27830 -10.02262 -9.63904 -9.08986 -9.02229 -8.64737 -8.43282 -8.32404 -7.95128 -6.80620 -5.96047 -4.01095 0.93495 1.52010 2.24205 3.30191 3.43799 3.52247 3.59686 3.84753 4.26030 4.69339 4.75271 4.85979 4.95550 5.04695 5.09380 5.36548 5.38489 5.42562 5.49179 5.69255 5.89573 5.96444 5.98482 6.07880 6.24292 6.25829 6.39520 6.43453 6.51049 6.54746 6.58764 6.66132 6.75341 6.78623 6.96678 7.17107 7.20282 7.43985 7.78427 7.90151 8.58747 8.81224 9.02654 9.70480 11.14332 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.024326 B = 0.006189 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.765077 B = 4522.729564 C = 4988.987516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.088 3.912 3 Si 0.883 3.117 4 H -0.297 1.297 5 H -0.307 1.307 6 H -0.224 1.224 7 C -0.486 4.486 8 H 0.069 0.931 9 C 0.008 3.992 10 C 0.096 3.904 11 N -0.543 5.543 12 C 0.387 3.613 13 C -0.143 4.143 14 C -0.080 4.080 15 C -0.123 4.123 16 C -0.063 4.063 17 C -0.171 4.171 18 C -0.073 4.073 19 C -0.180 4.180 20 C 0.215 3.785 21 N -0.622 5.622 22 H 0.413 0.587 23 C -0.184 4.184 24 C -0.200 4.200 25 H 0.260 0.740 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.148 0.852 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 -3.185 14.263 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.114 4.114 3 Si 0.712 3.288 4 H -0.224 1.224 5 H -0.234 1.234 6 H -0.146 1.146 7 C -0.523 4.523 8 H 0.088 0.912 9 C 0.007 3.993 10 C -0.035 4.035 11 N -0.264 5.264 12 C 0.112 3.888 13 C -0.165 4.165 14 C -0.103 4.103 15 C -0.127 4.127 16 C -0.081 4.081 17 C -0.191 4.191 18 C -0.092 4.092 19 C -0.202 4.202 20 C 0.110 3.890 21 N -0.242 5.242 22 H 0.250 0.750 23 C -0.222 4.222 24 C -0.237 4.237 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.165 0.835 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.646 -2.361 13.641 14.602 hybrid contribution 0.069 0.552 -0.259 0.614 sum 4.715 -1.809 13.381 14.303 Atomic orbital electron populations 1.69935 1.06707 1.26909 1.50532 1.24899 0.94335 0.99316 0.92856 0.86796 0.82964 0.82169 0.76910 1.22446 1.23446 1.14648 1.20081 0.86213 0.94117 1.51907 0.91247 1.19511 0.95249 0.99008 0.85545 1.21739 0.94872 0.93627 0.93248 1.72144 1.15198 1.36660 1.02367 1.19719 0.93522 0.86863 0.88647 1.22798 1.01404 0.93966 0.98290 1.22068 0.96410 0.98674 0.93166 1.18557 1.05413 0.90799 0.97942 1.21048 0.95214 0.99570 0.92293 1.20852 1.04274 0.93356 1.00662 1.20903 0.96735 0.95256 0.96334 1.20596 1.04537 0.99115 0.95991 1.17839 0.92041 0.92311 0.86795 1.41294 1.54230 1.09407 1.19297 0.74961 1.22860 1.00991 0.93742 1.04609 1.22974 1.01357 0.93820 1.05558 0.93043 0.94284 0.92365 0.83499 0.85161 0.85596 0.86182 0.85961 0.85646 0.91154 0.89645 0.90980 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.57 13.96 55.43 0.77 -27.79 16 2 C 0.09 2.62 5.38 -17.82 -0.10 2.53 16 3 Si 0.88 23.44 23.56 -169.99 -4.00 19.44 16 4 H -0.30 -7.88 7.05 56.52 0.40 -7.48 16 5 H -0.31 -8.28 7.11 56.52 0.40 -7.88 16 6 H -0.22 -5.71 5.66 56.52 0.32 -5.39 16 7 C -0.49 -13.86 8.87 -34.44 -0.31 -14.16 16 8 H 0.07 2.18 8.06 -52.49 -0.42 1.75 16 9 C 0.01 0.20 1.37 -155.62 -0.21 -0.02 16 10 C 0.10 2.03 6.09 -4.04 -0.02 2.01 16 11 N -0.54 -12.10 7.30 -58.93 -0.43 -12.53 16 12 C 0.39 7.80 7.78 -154.64 -1.20 6.59 16 13 C -0.14 -2.55 9.29 -37.44 -0.35 -2.90 16 14 C -0.08 -1.22 10.02 -37.30 -0.37 -1.59 16 15 C -0.12 -1.85 5.87 -105.02 -0.62 -2.47 16 16 C -0.06 -0.76 9.80 -39.17 -0.38 -1.15 16 17 C -0.17 -1.89 10.02 -39.61 -0.40 -2.29 16 18 C -0.07 -0.83 10.02 -39.54 -0.40 -1.22 16 19 C -0.18 -2.38 9.88 -39.40 -0.39 -2.77 16 20 C 0.21 3.42 6.65 -83.79 -0.56 2.87 16 21 N -0.62 -11.15 5.44 -8.65 -0.05 -11.20 16 22 H 0.41 6.98 8.79 -40.82 -0.36 6.62 16 23 C -0.18 -3.83 9.95 -26.73 -0.27 -4.09 16 24 C -0.20 -4.48 7.34 -26.69 -0.20 -4.67 16 25 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 26 H 0.04 0.75 5.19 -51.93 -0.27 0.48 16 27 H 0.06 1.16 7.95 -51.93 -0.41 0.74 16 28 H 0.15 2.53 5.84 -52.49 -0.31 2.22 16 29 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 36 H 0.07 1.47 8.08 -51.93 -0.42 1.05 16 37 H 0.08 2.01 6.76 -51.93 -0.35 1.66 16 LS Contribution 303.96 15.07 4.58 4.58 Total: -1.00 -33.62 303.96 -9.61 -43.23 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -4.72 Total: 7.62 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -5.77 Total: -23.34 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.30 Total: -51.52 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.00 Total: 19.44 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.62 -9.61 -43.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362365088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.667 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds