Wall clock time and date at job start Mon Mar 30 2020 07:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99852 * 2 1 4 4 H 1.48506 * 109.47274 * 270.97876 * 3 2 1 5 5 H 1.48499 * 109.47546 * 30.97704 * 3 2 1 6 6 H 1.48502 * 109.47046 * 150.98197 * 3 2 1 7 7 C 1.37873 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00624 * 358.21780 * 7 2 1 9 9 C 1.50707 * 119.99816 * 178.21191 * 7 2 1 10 10 C 1.52999 * 115.54571 * 91.69141 * 9 7 2 11 11 N 1.46499 * 109.47393 * 320.44683 * 10 9 7 12 12 C 1.31177 * 120.00349 * 114.29943 * 11 10 9 13 13 C 1.46348 * 119.75317 * 353.11906 * 12 11 10 14 14 C 1.35094 * 119.67161 * 179.74839 * 13 12 11 15 15 C 1.46660 * 119.18482 * 0.52505 * 14 13 12 16 16 C 1.39930 * 120.45721 * 179.70245 * 15 14 13 17 17 C 1.37634 * 119.75214 * 180.02562 * 16 15 14 18 18 C 1.38747 * 120.38980 * 0.02562 * 17 16 15 19 19 C 1.37849 * 120.57876 * 359.97438 * 18 17 16 20 20 C 1.39100 * 119.99104 * 0.02562 * 19 18 17 21 21 N 1.37432 * 119.75651 * 173.39486 * 12 11 10 22 22 H 0.96997 * 119.65503 * 359.95473 * 21 12 11 23 23 C 1.52996 * 117.50328 * 237.36338 * 9 7 2 24 24 C 1.52999 * 60.03194 * 107.49927 * 23 9 7 25 25 H 0.96994 * 120.00080 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47103 * 80.44692 * 10 9 7 27 27 H 1.08997 * 109.47132 * 200.44034 * 10 9 7 28 28 H 1.07997 * 120.16246 * 0.02562 * 13 12 11 29 29 H 1.08001 * 120.40867 * 180.24864 * 14 13 12 30 30 H 1.08001 * 120.12450 * 0.02562 * 16 15 14 31 31 H 1.08001 * 119.80694 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.71257 * 179.97438 * 18 17 16 33 33 H 1.07995 * 119.99953 * 180.02562 * 19 18 17 34 34 H 1.08999 * 117.50064 * 215.00467 * 23 9 7 35 35 H 1.09007 * 117.49642 * 359.97438 * 23 9 7 36 36 H 1.09003 * 117.49693 * 107.49939 * 24 23 9 37 37 H 1.09001 * 117.50549 * 252.52127 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4759 2.0584 -1.3999 5 1 1.4571 2.6466 0.7206 6 1 3.5569 1.4342 0.6792 7 6 2.0045 -1.1940 -0.0005 8 1 1.4649 -2.1292 0.0281 9 6 3.5110 -1.1944 -0.0413 10 6 4.2079 -1.2144 1.3207 11 7 3.4828 -0.3477 2.2530 12 6 2.8783 -0.8660 3.2955 13 6 2.8021 -2.3202 3.4421 14 6 2.1836 -2.8522 4.5189 15 6 1.5889 -1.9571 5.5169 16 6 0.9366 -2.4795 6.6392 17 6 0.3831 -1.6261 7.5663 18 6 0.4679 -0.2520 7.3941 19 6 1.1071 0.2787 6.2941 20 6 1.6735 -0.5654 5.3446 21 7 2.3163 -0.0397 4.2389 22 1 2.3710 0.9224 4.1279 23 6 4.1866 -1.9436 -1.1915 24 6 4.1880 -0.4138 -1.1706 25 1 -0.4850 0.8400 0.0004 26 1 4.2209 -2.2335 1.7073 27 1 5.2308 -0.8545 1.2107 28 1 3.2420 -2.9646 2.6955 29 1 2.1240 -3.9236 4.6411 30 1 0.8676 -3.5484 6.7773 31 1 -0.1202 -2.0284 8.4331 32 1 0.0294 0.4076 8.1283 33 1 1.1680 1.3498 6.1696 34 1 5.1274 -2.4509 -0.9780 35 1 3.5413 -2.4368 -1.9186 36 1 5.1299 0.0855 -0.9433 37 1 3.5436 0.1000 -1.8839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362365088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:18 Heat of formation + Delta-G solvation = 82.367202 kcal Electronic energy + Delta-G solvation = -19880.283318 eV Core-core repulsion = 17009.034357 eV Total energy + Delta-G solvation = -2871.248961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29969 -39.11497 -37.88144 -34.94680 -34.35571 -34.17537 -30.92916 -30.13503 -27.90009 -26.87237 -24.43584 -23.57964 -23.38822 -22.70550 -20.76603 -19.20156 -18.82418 -18.06404 -17.47555 -16.71818 -16.41906 -15.79575 -15.76608 -15.36058 -15.13138 -14.84163 -14.74724 -14.59134 -14.08497 -13.51838 -13.36749 -13.11584 -12.96241 -12.62535 -12.25597 -12.06815 -11.99435 -11.84029 -11.67347 -11.43727 -10.95762 -10.71062 -10.46204 -10.27609 -9.56911 -9.36830 -8.27131 -8.13757 -6.31251 -0.18086 0.46564 1.04070 1.35343 1.39303 1.72936 2.04892 2.26006 2.50080 3.11005 3.15457 3.20078 3.65883 3.79857 3.87255 4.12413 4.20907 4.27106 4.36849 4.40992 4.48689 4.51878 4.68044 4.76413 4.78406 4.87079 4.96021 5.03801 5.07808 5.22801 5.25013 5.45078 5.47207 5.52702 5.60666 5.66372 5.76813 5.93434 6.22562 6.28661 6.45383 6.75411 7.38388 7.43783 8.88149 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.024326 B = 0.006189 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.765077 B = 4522.729564 C = 4988.987516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.038 3.962 3 Si 0.939 3.061 4 H -0.298 1.298 5 H -0.317 1.317 6 H -0.205 1.205 7 C -0.469 4.469 8 H 0.024 0.976 9 C -0.021 4.021 10 C 0.104 3.896 11 N -0.598 5.598 12 C 0.388 3.612 13 C -0.194 4.194 14 C -0.049 4.049 15 C -0.155 4.155 16 C -0.059 4.059 17 C -0.165 4.165 18 C -0.066 4.066 19 C -0.190 4.190 20 C 0.181 3.819 21 N -0.627 5.627 22 H 0.412 0.588 23 C -0.161 4.161 24 C -0.200 4.200 25 H 0.257 0.743 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.145 0.855 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.326 -3.921 16.963 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.158 4.158 3 Si 0.768 3.232 4 H -0.226 1.226 5 H -0.246 1.246 6 H -0.127 1.127 7 C -0.507 4.507 8 H 0.043 0.957 9 C -0.023 4.023 10 C -0.027 4.027 11 N -0.321 5.321 12 C 0.114 3.886 13 C -0.215 4.215 14 C -0.072 4.072 15 C -0.159 4.159 16 C -0.077 4.077 17 C -0.184 4.184 18 C -0.084 4.084 19 C -0.212 4.212 20 C 0.078 3.922 21 N -0.248 5.248 22 H 0.248 0.752 23 C -0.198 4.198 24 C -0.237 4.237 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.162 0.838 29 H 0.183 0.817 30 H 0.174 0.826 31 H 0.174 0.826 32 H 0.174 0.826 33 H 0.154 0.846 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.483 -3.120 16.382 17.555 hybrid contribution -0.359 0.644 -0.819 1.102 sum 5.124 -2.476 15.563 16.571 Atomic orbital electron populations 1.70072 1.08402 1.27294 1.53737 1.25578 0.94725 1.02394 0.93149 0.85922 0.82495 0.78285 0.76530 1.22559 1.24635 1.12664 1.20218 0.89078 0.91918 1.49482 0.95733 1.19536 0.92726 1.01993 0.88020 1.21598 0.95028 0.94623 0.91424 1.72079 1.18477 1.37312 1.04229 1.20115 0.91995 0.88232 0.88227 1.22765 1.05359 0.93015 1.00407 1.22546 0.92714 1.00506 0.91405 1.18905 1.07049 0.90595 0.99398 1.21460 0.93716 1.01481 0.91028 1.21362 1.02819 0.93112 1.01097 1.21394 0.94989 0.96267 0.95767 1.20903 1.04514 0.99679 0.96143 1.18318 0.93353 0.93503 0.87012 1.41428 1.54333 1.09304 1.19699 0.75154 1.22905 1.01906 0.92962 1.02052 1.22972 1.01752 0.95016 1.03989 0.93420 0.93126 0.90991 0.83765 0.81668 0.82567 0.82573 0.82610 0.84588 0.87141 0.90609 0.88362 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.10 13.96 21.45 0.30 -62.80 16 2 C 0.04 2.36 5.38 84.65 0.46 2.82 16 3 Si 0.94 50.07 23.56 68.60 1.62 51.69 16 4 H -0.30 -15.66 7.05 99.48 0.70 -14.96 16 5 H -0.32 -17.26 7.11 99.48 0.71 -16.56 16 6 H -0.21 -10.26 5.66 99.48 0.56 -9.69 16 7 C -0.47 -27.72 8.87 25.60 0.23 -27.50 16 8 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 9 C -0.02 -1.02 1.37 -52.90 -0.07 -1.09 16 10 C 0.10 4.37 6.09 86.38 0.53 4.90 16 11 N -0.60 -26.99 7.30 -340.36 -2.48 -29.48 16 12 C 0.39 16.00 7.78 135.85 1.06 17.06 16 13 C -0.19 -7.01 9.29 23.66 0.22 -6.79 16 14 C -0.05 -1.43 10.02 23.75 0.24 -1.20 16 15 C -0.16 -4.43 5.87 -20.12 -0.12 -4.55 16 16 C -0.06 -1.21 9.80 22.54 0.22 -0.99 16 17 C -0.16 -2.87 10.02 22.25 0.22 -2.64 16 18 C -0.07 -1.23 10.02 22.30 0.22 -1.01 16 19 C -0.19 -4.72 9.88 22.38 0.22 -4.50 16 20 C 0.18 5.67 6.65 38.88 0.26 5.93 16 21 N -0.63 -23.01 5.44 -181.29 -0.99 -23.99 16 22 H 0.41 14.45 8.79 -92.71 -0.81 13.64 16 23 C -0.16 -6.42 9.95 30.59 0.30 -6.11 16 24 C -0.20 -8.70 7.34 30.62 0.22 -8.48 16 25 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 26 H 0.05 1.95 5.19 -2.38 -0.01 1.94 16 27 H 0.07 2.74 7.95 -2.39 -0.02 2.72 16 28 H 0.14 5.09 5.84 -2.91 -0.02 5.08 16 29 H 0.17 3.46 8.06 -2.91 -0.02 3.43 16 30 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 32 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 34 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 35 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 36 H 0.10 3.75 8.08 -2.39 -0.02 3.73 16 37 H 0.06 2.93 6.76 -2.39 -0.02 2.92 16 Total: -1.00 -76.88 303.96 2.78 -74.11 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.12 Total: 24.64 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 4.21 Total: -34.16 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -3.17 Total: -116.27 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 1.62 Total: 51.69 kcal Total: -76.88 2.78 -74.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362365088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.473 kcal (2) G-P(sol) polarization free energy of solvation -76.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds