Wall clock time and date at job start Mon Mar 30 2020 06:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86303 * 109.47356 * 2 1 4 4 C 1.86303 * 109.46887 * 240.00563 * 2 1 3 5 5 O 1.63098 * 109.47596 * 120.00605 * 2 1 3 6 6 C 1.42896 * 114.00018 * 59.99437 * 5 2 1 7 7 C 1.52997 * 109.46906 * 150.00309 * 6 5 2 8 8 C 1.50698 * 109.47721 * 295.00171 * 7 6 5 9 9 C 1.38274 * 119.98686 * 269.73226 * 8 7 6 10 10 C 1.38216 * 120.04791 * 179.71986 * 9 8 7 11 11 C 1.38223 * 120.02822 * 0.54838 * 10 9 8 12 12 C 1.38436 * 119.97231 * 359.72171 * 11 10 9 13 13 F 1.35100 * 120.02499 * 180.02562 * 12 11 10 14 14 C 1.38175 * 119.98824 * 89.99128 * 8 7 6 15 15 C 1.50701 * 109.47417 * 270.00467 * 6 5 2 16 16 N 1.27937 * 120.00106 * 115.00006 * 15 6 5 17 17 Si 1.86802 * 119.99770 * 295.00237 * 15 6 5 18 18 H 1.48498 * 109.47252 * 359.97438 * 17 15 6 19 19 H 1.48497 * 109.47104 * 120.00060 * 17 15 6 20 20 H 1.48506 * 109.47048 * 239.99593 * 17 15 6 21 21 H 1.09002 * 109.46813 * 299.99357 * 1 2 3 22 22 H 1.08999 * 109.47394 * 59.99626 * 1 2 3 23 23 H 1.08998 * 109.46927 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47283 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47175 * 300.00509 * 3 2 1 26 26 H 1.09006 * 109.46532 * 60.00049 * 3 2 1 27 27 H 1.08998 * 109.47083 * 299.99594 * 4 2 1 28 28 H 1.08994 * 109.47598 * 60.00064 * 4 2 1 29 29 H 1.09002 * 109.47369 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.46984 * 30.00487 * 6 5 2 31 31 H 1.09000 * 109.47325 * 55.00136 * 7 6 5 32 32 H 1.09008 * 109.47017 * 175.00046 * 7 6 5 33 33 H 1.07997 * 119.96943 * 359.97438 * 9 8 7 34 34 H 1.08001 * 119.98789 * 180.27053 * 10 9 8 35 35 H 1.07998 * 120.01028 * 179.75240 * 11 10 9 36 36 H 1.08001 * 120.01026 * 359.97438 * 14 8 7 37 37 H 0.97000 * 120.00032 * 359.97438 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4839 -0.8781 -1.5213 5 8 2.4068 -0.7690 1.3316 6 6 1.9851 -2.1308 1.4292 7 6 3.0435 -2.9396 2.1819 8 6 4.3168 -2.9733 1.3765 9 6 4.5302 -3.9895 0.4634 10 6 5.6950 -4.0185 -0.2801 11 6 6.6529 -3.0377 -0.1034 12 6 6.4427 -2.0230 0.8145 13 9 7.3780 -1.0636 0.9876 14 6 5.2728 -1.9918 1.5547 15 6 0.6768 -2.1995 2.1740 16 7 -0.3797 -2.6022 1.5754 17 14 0.5978 -1.6964 3.9713 18 1 1.9462 -1.2723 4.4264 19 1 -0.3555 -0.5686 4.1282 20 1 0.1398 -2.8489 4.7883 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.5740 1.7564 0.0005 25 1 2.1207 2.2703 -0.8899 26 1 2.1207 2.2702 0.8901 27 1 2.1206 -1.9058 -1.5213 28 1 2.1206 -0.3643 -2.4112 29 1 3.5739 -0.8785 -1.5211 30 1 1.8557 -2.5437 0.4288 31 1 3.2371 -2.4743 3.1483 32 1 2.6829 -3.9570 2.3342 33 1 3.7844 -4.7588 0.3282 34 1 5.8589 -4.8102 -0.9962 35 1 7.5647 -3.0629 -0.6817 36 1 5.1075 -1.2003 2.2707 37 1 -0.3388 -2.8631 0.6421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380589024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:27 Heat of formation + Delta-G solvation = -88.188930 kcal Electronic energy + Delta-G solvation = -19193.932354 eV Core-core repulsion = 16201.776257 eV Total energy + Delta-G solvation = -2992.156098 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.74435 -40.56941 -39.02849 -35.84602 -33.95620 -31.53115 -29.89924 -29.58066 -28.55319 -28.48815 -25.43743 -23.68268 -22.36487 -21.95068 -18.48737 -18.34609 -17.51965 -17.13623 -17.04418 -16.47680 -15.94554 -15.85720 -15.00666 -14.46146 -14.38740 -14.27513 -14.13964 -13.98719 -13.86976 -13.53532 -13.36719 -13.33789 -13.19693 -13.16430 -12.91153 -12.77467 -12.70368 -12.41544 -12.07184 -11.85590 -11.71009 -11.46259 -10.80648 -10.73235 -10.15282 -9.84783 -9.59083 0.15981 0.25556 0.60850 1.17574 1.39482 1.64663 1.75351 1.83436 1.91758 1.97651 2.35613 2.60537 3.23641 3.46203 3.67044 3.79399 3.88915 4.02793 4.11875 4.18370 4.26813 4.46083 4.51975 4.58281 4.64543 4.65464 4.67841 4.70419 4.71568 4.73463 4.92520 5.06818 5.15258 5.21298 5.33908 5.39616 5.47989 5.49764 5.55342 5.93913 6.68488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.512 4.512 2 Si 1.247 2.753 3 C -0.464 4.464 4 C -0.506 4.506 5 O -0.606 6.606 6 C 0.102 3.898 7 C -0.088 4.088 8 C -0.051 4.051 9 C -0.131 4.131 10 C -0.090 4.090 11 C -0.157 4.157 12 C 0.097 3.903 13 F -0.139 7.139 14 C -0.134 4.134 15 C -0.054 4.054 16 N -0.607 5.607 17 Si 1.061 2.939 18 H -0.239 1.239 19 H -0.247 1.247 20 H -0.248 1.248 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -1.709 -0.152 1.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.614 4.614 2 Si 1.384 2.616 3 C -0.571 4.571 4 C -0.608 4.608 5 O -0.564 6.564 6 C 0.043 3.957 7 C -0.126 4.126 8 C -0.051 4.051 9 C -0.150 4.150 10 C -0.108 4.108 11 C -0.176 4.176 12 C 0.078 3.922 13 F -0.118 7.118 14 C -0.153 4.153 15 C -0.300 4.300 16 N -0.222 5.222 17 Si 0.874 3.126 18 H -0.162 1.162 19 H -0.170 1.170 20 H -0.171 1.171 21 H 0.093 0.907 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.048 -1.580 1.180 2.233 hybrid contribution 0.747 0.031 -2.198 2.322 sum -0.302 -1.549 -1.019 1.878 Atomic orbital electron populations 1.27190 1.24726 1.04516 1.04966 0.77347 0.63510 0.64991 0.55723 1.26264 1.06976 1.18949 1.04914 1.26952 1.07071 1.08341 1.18428 1.85434 1.78498 1.26152 1.66267 1.21889 0.93149 0.82197 0.98503 1.20888 0.91424 1.00856 0.99383 1.19488 0.95068 0.94018 0.96549 1.21146 0.98126 0.98844 0.96840 1.20997 0.93102 0.97903 0.98814 1.21206 1.01486 0.95233 0.99706 1.17762 0.87744 0.88193 0.98489 1.91521 1.63928 1.61850 1.94504 1.21111 0.92435 1.00506 1.01260 1.32401 0.90959 0.94592 1.12058 1.69480 1.30401 1.06378 1.15917 0.83592 0.81221 0.80606 0.67144 1.16180 1.17022 1.17119 0.90686 0.90785 0.91665 0.90662 0.90515 0.90590 0.91744 0.90781 0.90853 0.91461 0.88258 0.88643 0.85446 0.85002 0.84828 0.84026 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 0.22 8.04 101.05 0.81 1.03 16 2 Si 1.25 -1.75 12.68 -169.99 -2.16 -3.90 16 3 C -0.46 0.31 8.65 101.05 0.87 1.18 16 4 C -0.51 0.36 8.56 101.05 0.87 1.23 16 5 O -0.61 0.43 7.41 -35.23 -0.26 0.17 16 6 C 0.10 -0.15 1.80 -27.88 -0.05 -0.20 16 7 C -0.09 0.18 4.48 -27.89 -0.12 0.06 16 8 C -0.05 0.03 4.97 -104.63 -0.52 -0.49 16 9 C -0.13 0.15 9.70 -39.58 -0.38 -0.24 16 10 C -0.09 0.07 10.04 -39.60 -0.40 -0.33 16 11 C -0.16 -0.08 10.03 -39.51 -0.40 -0.47 16 12 C 0.10 0.17 7.30 -39.42 -0.29 -0.12 16 13 F -0.14 -0.45 17.27 2.25 0.04 -0.41 16 14 C -0.13 -0.09 9.38 -39.52 -0.37 -0.46 16 15 C -0.05 0.04 3.96 -13.90 -0.06 -0.01 16 16 N -0.61 -0.07 12.06 56.22 0.68 0.61 16 17 Si 1.06 -0.85 28.17 -169.99 -4.79 -5.64 16 18 H -0.24 0.38 6.71 56.52 0.38 0.76 16 19 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 20 H -0.25 0.12 7.11 56.52 0.40 0.52 16 21 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 22 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 23 H 0.06 -0.02 5.17 -51.93 -0.27 -0.29 16 24 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 25 H 0.08 -0.09 7.96 -51.93 -0.41 -0.50 16 26 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 27 H 0.06 -0.07 7.10 -51.93 -0.37 -0.44 16 28 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 29 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 30 H 0.07 -0.17 5.85 -51.93 -0.30 -0.48 16 31 H 0.10 -0.26 6.58 -51.93 -0.34 -0.60 16 32 H 0.10 -0.37 8.08 -51.92 -0.42 -0.79 16 33 H 0.13 -0.39 8.06 -52.49 -0.42 -0.81 16 34 H 0.13 -0.35 8.06 -52.49 -0.42 -0.78 16 35 H 0.13 -0.10 8.06 -52.49 -0.42 -0.52 16 36 H 0.14 -0.01 8.06 -52.49 -0.42 -0.43 16 37 H 0.32 -0.40 7.58 -40.82 -0.31 -0.71 16 LS Contribution 313.77 15.07 4.73 4.73 Total: 0.00 -3.43 313.77 -7.21 -10.64 By element: Atomic # 1 Polarization: -1.96 SS G_CDS: -5.42 Total: -7.38 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.03 Total: 1.18 kcal Atomic # 7 Polarization: -0.07 SS G_CDS: 0.68 Total: 0.61 kcal Atomic # 8 Polarization: 0.43 SS G_CDS: -0.26 Total: 0.17 kcal Atomic # 9 Polarization: -0.45 SS G_CDS: 0.04 Total: -0.41 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: -6.95 Total: -9.54 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -3.43 -7.21 -10.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380589024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.549 kcal (2) G-P(sol) polarization free energy of solvation -3.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds