Wall clock time and date at job start Mon Mar 30 2020 06:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86303 * 109.47356 * 2 1 4 4 C 1.86303 * 109.46887 * 240.00563 * 2 1 3 5 5 O 1.63098 * 109.47596 * 120.00605 * 2 1 3 6 6 C 1.42896 * 114.00018 * 59.99437 * 5 2 1 7 7 C 1.52997 * 109.46906 * 150.00309 * 6 5 2 8 8 C 1.50698 * 109.47721 * 295.00171 * 7 6 5 9 9 C 1.38274 * 119.98686 * 269.73226 * 8 7 6 10 10 C 1.38216 * 120.04791 * 179.71986 * 9 8 7 11 11 C 1.38223 * 120.02822 * 0.54838 * 10 9 8 12 12 C 1.38436 * 119.97231 * 359.72171 * 11 10 9 13 13 F 1.35100 * 120.02499 * 180.02562 * 12 11 10 14 14 C 1.38175 * 119.98824 * 89.99128 * 8 7 6 15 15 C 1.50701 * 109.47417 * 270.00467 * 6 5 2 16 16 N 1.27937 * 120.00106 * 115.00006 * 15 6 5 17 17 Si 1.86802 * 119.99770 * 295.00237 * 15 6 5 18 18 H 1.48498 * 109.47252 * 359.97438 * 17 15 6 19 19 H 1.48497 * 109.47104 * 120.00060 * 17 15 6 20 20 H 1.48506 * 109.47048 * 239.99593 * 17 15 6 21 21 H 1.09002 * 109.46813 * 299.99357 * 1 2 3 22 22 H 1.08999 * 109.47394 * 59.99626 * 1 2 3 23 23 H 1.08998 * 109.46927 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47283 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47175 * 300.00509 * 3 2 1 26 26 H 1.09006 * 109.46532 * 60.00049 * 3 2 1 27 27 H 1.08998 * 109.47083 * 299.99594 * 4 2 1 28 28 H 1.08994 * 109.47598 * 60.00064 * 4 2 1 29 29 H 1.09002 * 109.47369 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.46984 * 30.00487 * 6 5 2 31 31 H 1.09000 * 109.47325 * 55.00136 * 7 6 5 32 32 H 1.09008 * 109.47017 * 175.00046 * 7 6 5 33 33 H 1.07997 * 119.96943 * 359.97438 * 9 8 7 34 34 H 1.08001 * 119.98789 * 180.27053 * 10 9 8 35 35 H 1.07998 * 120.01028 * 179.75240 * 11 10 9 36 36 H 1.08001 * 120.01026 * 359.97438 * 14 8 7 37 37 H 0.97000 * 120.00032 * 359.97438 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4839 -0.8781 -1.5213 5 8 2.4068 -0.7690 1.3316 6 6 1.9851 -2.1308 1.4292 7 6 3.0435 -2.9396 2.1819 8 6 4.3168 -2.9733 1.3765 9 6 4.5302 -3.9895 0.4634 10 6 5.6950 -4.0185 -0.2801 11 6 6.6529 -3.0377 -0.1034 12 6 6.4427 -2.0230 0.8145 13 9 7.3780 -1.0636 0.9876 14 6 5.2728 -1.9918 1.5547 15 6 0.6768 -2.1995 2.1740 16 7 -0.3797 -2.6022 1.5754 17 14 0.5978 -1.6964 3.9713 18 1 1.9462 -1.2723 4.4264 19 1 -0.3555 -0.5686 4.1282 20 1 0.1398 -2.8489 4.7883 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.5740 1.7564 0.0005 25 1 2.1207 2.2703 -0.8899 26 1 2.1207 2.2702 0.8901 27 1 2.1206 -1.9058 -1.5213 28 1 2.1206 -0.3643 -2.4112 29 1 3.5739 -0.8785 -1.5211 30 1 1.8557 -2.5437 0.4288 31 1 3.2371 -2.4743 3.1483 32 1 2.6829 -3.9570 2.3342 33 1 3.7844 -4.7588 0.3282 34 1 5.8589 -4.8102 -0.9962 35 1 7.5647 -3.0629 -0.6817 36 1 5.1075 -1.2003 2.2707 37 1 -0.3388 -2.8631 0.6421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380589024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:26 Heat of formation + Delta-G solvation = -76.364633 kcal Electronic energy + Delta-G solvation = -19193.419614 eV Core-core repulsion = 16201.776257 eV Total energy + Delta-G solvation = -2991.643358 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.87234 -40.47825 -38.94825 -35.78322 -33.85553 -31.48014 -29.81572 -29.51432 -28.48684 -28.43546 -25.34276 -23.63450 -22.30863 -21.85117 -18.39970 -18.31015 -17.46633 -17.10842 -17.01460 -16.58582 -15.86371 -15.79167 -14.91250 -14.40106 -14.37547 -14.21776 -14.04551 -13.93179 -13.81218 -13.47097 -13.30849 -13.25052 -13.14631 -13.10194 -12.86643 -12.70606 -12.60718 -12.30126 -12.00118 -11.76862 -11.61945 -11.40421 -10.74343 -10.67114 -10.07909 -9.80386 -9.55452 0.19737 0.30327 0.68035 1.24963 1.49844 1.72496 1.83879 1.89529 2.00156 2.05662 2.42744 2.66107 3.27930 3.53989 3.81657 3.92535 3.99341 4.17796 4.21500 4.31826 4.40244 4.54601 4.60773 4.66170 4.69902 4.71345 4.73557 4.74395 4.77708 4.88651 5.08445 5.14905 5.21352 5.29632 5.41562 5.45548 5.53234 5.55727 5.64397 5.99286 6.79861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.520 4.520 2 Si 1.284 2.716 3 C -0.478 4.478 4 C -0.511 4.511 5 O -0.615 6.615 6 C 0.097 3.903 7 C -0.091 4.091 8 C -0.051 4.051 9 C -0.130 4.130 10 C -0.093 4.093 11 C -0.168 4.168 12 C 0.069 3.931 13 F -0.156 7.156 14 C -0.143 4.143 15 C -0.048 4.048 16 N -0.625 5.625 17 Si 1.066 2.934 18 H -0.226 1.226 19 H -0.266 1.266 20 H -0.251 1.251 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.573 -2.828 -0.410 2.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.621 4.621 2 Si 1.419 2.581 3 C -0.584 4.584 4 C -0.613 4.613 5 O -0.572 6.572 6 C 0.038 3.962 7 C -0.129 4.129 8 C -0.051 4.051 9 C -0.148 4.148 10 C -0.111 4.111 11 C -0.187 4.187 12 C 0.050 3.950 13 F -0.135 7.135 14 C -0.162 4.162 15 C -0.294 4.294 16 N -0.240 5.240 17 Si 0.881 3.119 18 H -0.148 1.148 19 H -0.191 1.191 20 H -0.175 1.175 21 H 0.086 0.914 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.136 0.864 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.426 -2.694 0.919 3.184 hybrid contribution 0.824 0.381 -2.119 2.305 sum -0.602 -2.314 -1.200 2.675 Atomic orbital electron populations 1.27310 1.25675 1.04464 1.04700 0.76689 0.62312 0.63932 0.55178 1.26427 1.06727 1.20151 1.05089 1.27021 1.06480 1.08929 1.18854 1.85439 1.78530 1.26733 1.66516 1.22005 0.92942 0.81958 0.99289 1.21003 0.90531 1.02141 0.99205 1.19658 0.95180 0.93639 0.96667 1.21487 0.98371 0.98968 0.95932 1.21297 0.92836 0.97886 0.99088 1.21395 1.02273 0.95372 0.99648 1.18076 0.88205 0.88745 0.99953 1.91470 1.64617 1.62610 1.94770 1.21230 0.92531 1.01106 1.01337 1.32349 0.91126 0.94002 1.11906 1.69477 1.30886 1.07017 1.16616 0.83521 0.81344 0.79684 0.67394 1.14815 1.19110 1.17517 0.91399 0.90618 0.91603 0.91172 0.90140 0.90694 0.91092 0.90673 0.91714 0.90123 0.87838 0.86383 0.82997 0.82963 0.84324 0.84031 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 0.44 8.04 113.37 0.91 1.35 16 2 Si 1.28 -3.61 12.68 68.60 0.87 -2.74 16 3 C -0.48 0.33 8.65 113.37 0.98 1.31 16 4 C -0.51 0.91 8.56 113.37 0.97 1.88 16 5 O -0.61 1.06 7.41 -148.98 -1.10 -0.05 16 6 C 0.10 -0.38 1.80 29.85 0.05 -0.33 16 7 C -0.09 0.50 4.48 29.85 0.13 0.64 16 8 C -0.05 0.11 4.97 -19.87 -0.10 0.01 16 9 C -0.13 0.50 9.70 22.27 0.22 0.71 16 10 C -0.09 0.23 10.04 22.26 0.22 0.46 16 11 C -0.17 -0.23 10.03 22.31 0.22 0.00 16 12 C 0.07 0.31 7.30 22.37 0.16 0.48 16 13 F -0.16 -1.29 17.27 44.97 0.78 -0.51 16 14 C -0.14 -0.24 9.38 22.31 0.21 -0.03 16 15 C -0.05 0.10 3.96 88.68 0.35 0.46 16 16 N -0.62 0.21 12.06 24.11 0.29 0.50 16 17 Si 1.07 -1.81 28.17 68.60 1.93 0.12 16 18 H -0.23 0.87 6.71 99.48 0.67 1.53 16 19 H -0.27 -0.40 7.11 99.48 0.71 0.31 16 20 H -0.25 0.27 7.11 99.48 0.71 0.98 16 21 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 22 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 23 H 0.06 -0.06 5.17 -2.39 -0.01 -0.07 16 24 H 0.07 0.02 7.96 -2.39 -0.02 0.01 16 25 H 0.08 -0.14 7.96 -2.39 -0.02 -0.16 16 26 H 0.07 -0.05 7.96 -2.38 -0.02 -0.07 16 27 H 0.07 -0.22 7.10 -2.39 -0.02 -0.24 16 28 H 0.07 -0.15 7.96 -2.39 -0.02 -0.16 16 29 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 30 H 0.08 -0.54 5.85 -2.39 -0.01 -0.55 16 31 H 0.10 -0.65 6.58 -2.39 -0.02 -0.66 16 32 H 0.12 -1.19 8.08 -2.38 -0.02 -1.21 16 33 H 0.15 -1.37 8.06 -2.91 -0.02 -1.39 16 34 H 0.15 -1.08 8.06 -2.91 -0.02 -1.10 16 35 H 0.14 -0.10 8.06 -2.91 -0.02 -0.13 16 36 H 0.14 0.11 8.06 -2.91 -0.02 0.08 16 37 H 0.33 -1.08 7.58 -92.71 -0.70 -1.79 16 Total: 0.00 -8.63 313.77 8.18 -0.45 By element: Atomic # 1 Polarization: -5.78 SS G_CDS: 1.07 Total: -4.70 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 4.34 Total: 6.92 kcal Atomic # 7 Polarization: 0.21 SS G_CDS: 0.29 Total: 0.50 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: -1.10 Total: -0.05 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.78 Total: -0.51 kcal Atomic # 14 Polarization: -5.42 SS G_CDS: 2.80 Total: -2.61 kcal Total: -8.63 8.18 -0.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380589024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.911 kcal (2) G-P(sol) polarization free energy of solvation -8.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -0.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds