Wall clock time and date at job start Mon Mar 30 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47168 * 2 1 4 4 C 1.53002 * 109.47073 * 119.99928 * 2 1 3 5 5 H 1.09003 * 109.47013 * 299.99950 * 4 2 1 6 6 C 1.53001 * 109.47071 * 59.99803 * 4 2 1 7 7 N 1.46494 * 109.47363 * 179.97438 * 4 2 1 8 8 C 1.38408 * 120.00312 * 154.99628 * 7 4 2 9 9 N 1.32752 * 119.43300 * 0.02562 * 8 7 4 10 10 C 1.31472 * 121.73589 * 179.97438 * 9 8 7 11 11 C 1.40789 * 120.39244 * 0.02562 * 10 9 8 12 12 C 1.41197 * 120.56463 * 180.02562 * 11 10 9 13 13 H 1.07989 * 119.99870 * 335.70466 * 12 11 10 14 14 C 1.39869 * 119.99731 * 155.70457 * 12 11 10 15 15 N 1.30902 * 120.00227 * 343.21050 * 14 12 11 16 16 Si 1.86797 * 119.99701 * 163.20831 * 14 12 11 17 17 H 1.48499 * 109.47243 * 90.00219 * 16 14 12 18 18 H 1.48507 * 109.47092 * 209.99938 * 16 14 12 19 19 H 1.48493 * 109.47187 * 330.00106 * 16 14 12 20 20 C 1.41289 * 118.87079 * 359.97438 * 11 10 9 21 21 C 1.36672 * 118.39567 * 359.74574 * 20 11 10 22 22 Cl 1.73599 * 120.26075 * 180.25813 * 21 20 11 23 23 H 1.09003 * 109.47160 * 300.00212 * 1 2 3 24 24 H 1.08999 * 109.47089 * 59.99877 * 1 2 3 25 25 H 1.08999 * 109.47173 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46797 * 239.99393 * 2 1 3 27 27 H 1.09002 * 109.47757 * 59.99981 * 3 2 1 28 28 H 1.09001 * 109.47039 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47216 * 300.00045 * 3 2 1 30 30 H 1.09007 * 109.46786 * 180.02562 * 6 4 2 31 31 H 1.08989 * 109.47546 * 60.00329 * 6 4 2 32 32 H 1.08996 * 109.47300 * 299.99667 * 6 4 2 33 33 H 0.96996 * 119.99963 * 335.00546 * 7 4 2 34 34 H 1.08004 * 119.80321 * 179.97438 * 10 9 8 35 35 H 0.97000 * 120.00180 * 180.02562 * 15 14 12 36 36 H 1.07998 * 120.79938 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1637 1.2493 7 7 3.5050 -0.7218 1.2490 8 6 4.1972 -0.8263 2.4430 9 7 3.5223 -0.9259 3.5818 10 6 4.1336 -1.0279 4.7413 11 6 5.5400 -1.0336 4.8070 12 6 6.2003 -1.1435 6.0502 13 1 5.6993 -0.8373 6.9565 14 6 7.5032 -1.6489 6.1078 15 7 7.9914 -2.3171 5.0936 16 14 8.5465 -1.3702 7.6320 17 1 8.3364 -2.4879 8.5868 18 1 9.9795 -1.3109 7.2469 19 1 8.1530 -0.0903 8.2739 20 6 6.2794 -0.9287 3.6076 21 6 5.5950 -0.8309 2.4286 22 17 6.4549 -0.7065 0.9257 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.8930 -2.6774 2.1396 31 1 1.8933 -2.6776 0.3595 32 1 0.4400 -2.1637 1.2494 33 1 3.9898 -0.6488 0.4121 34 1 3.5535 -1.1068 5.6489 35 1 8.8949 -2.6680 5.1337 36 1 7.3593 -0.9304 3.6217 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381129493.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:23 Heat of formation + Delta-G solvation = 1.881810 kcal Electronic energy + Delta-G solvation = -18269.536513 eV Core-core repulsion = 15392.364594 eV Total energy + Delta-G solvation = -2877.171919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.90708 -37.25357 -35.54772 -34.28193 -32.75691 -30.50093 -29.90474 -28.57264 -26.76215 -24.91480 -23.10156 -21.86640 -20.92692 -19.56365 -17.42553 -16.64336 -16.01200 -15.20450 -14.39912 -14.29092 -14.20570 -13.59684 -13.35021 -13.09255 -12.89044 -12.46697 -12.12218 -11.88290 -11.83665 -11.70423 -11.43199 -11.21701 -11.18480 -10.95113 -10.80524 -10.72301 -10.62487 -10.41993 -10.13534 -9.81852 -9.47743 -8.79175 -8.25778 -8.11218 -6.90317 -6.65894 -4.29181 2.53212 2.81833 3.06011 3.09442 3.18940 3.22326 3.90304 4.18005 4.58491 4.93191 5.08086 5.23698 5.54563 5.66714 5.71698 5.76607 5.83196 5.90136 5.98504 6.07688 6.12620 6.18319 6.31212 6.32556 6.44591 6.62896 6.65461 6.76051 6.96865 7.09840 7.18959 7.67045 7.71189 8.15479 8.38998 8.46537 8.70154 8.74571 9.56071 10.14542 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.029603 B = 0.005109 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.617184 B = 5479.652699 C = 6015.136646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C -0.143 4.143 4 C 0.171 3.829 5 H 0.081 0.919 6 C -0.162 4.162 7 N -0.735 5.735 8 C 0.295 3.705 9 N -0.502 5.502 10 C 0.015 3.985 11 C 0.037 3.963 12 C -0.453 4.453 13 H 0.082 0.918 14 C 0.073 3.927 15 N -0.800 5.800 16 Si 0.909 3.091 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.087 4.087 21 C -0.105 4.105 22 Cl -0.116 7.116 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.394 0.606 34 H 0.133 0.867 35 H 0.282 0.718 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.788 2.964 -7.010 10.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.200 4.200 4 C 0.065 3.935 5 H 0.099 0.901 6 C -0.221 4.221 7 N -0.374 5.374 8 C 0.062 3.938 9 N -0.217 5.217 10 C -0.143 4.143 11 C 0.031 3.969 12 C -0.484 4.484 13 H 0.100 0.900 14 C -0.144 4.144 15 N -0.426 5.426 16 Si 0.734 3.266 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.115 4.115 21 C -0.138 4.138 22 Cl -0.089 7.089 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.230 0.770 34 H 0.151 0.849 35 H 0.093 0.907 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.565 2.841 -7.143 10.785 hybrid contribution 1.856 -0.068 0.251 1.874 sum -5.709 2.773 -6.892 9.369 Atomic orbital electron populations 1.21837 0.94904 1.01856 1.01546 1.21397 0.95882 0.96608 0.98518 1.21777 1.01613 0.95591 1.01025 1.20560 0.81132 0.94671 0.97170 0.90135 1.22262 0.99862 0.98034 1.01928 1.43867 1.04091 1.84608 1.04848 1.17434 0.85530 1.04090 0.86770 1.66778 1.39472 1.18082 0.97413 1.22364 0.91976 1.06969 0.93013 1.18291 0.91746 0.93444 0.93414 1.19307 0.98067 1.37302 0.93745 0.90028 1.25884 0.98189 0.92499 0.97800 1.69793 1.16739 1.24794 1.31261 0.86288 0.78867 0.79973 0.81495 1.19501 1.20144 1.18457 1.21303 1.00974 0.99723 0.89457 1.20939 0.90489 1.15778 0.86572 1.98237 1.77846 1.97320 1.35455 0.92552 0.92984 0.92306 0.91521 0.92751 0.92292 0.93397 0.92008 0.93624 0.92792 0.77024 0.84932 0.90727 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.84 37.16 0.33 -1.18 16 2 C -0.10 -1.31 2.55 -90.62 -0.23 -1.54 16 3 C -0.14 -1.78 9.04 37.15 0.34 -1.45 16 4 C 0.17 2.68 2.16 -67.93 -0.15 2.54 16 5 H 0.08 1.42 7.52 -51.93 -0.39 1.03 16 6 C -0.16 -2.44 9.14 37.16 0.34 -2.10 16 7 N -0.73 -13.40 4.46 -53.83 -0.24 -13.64 16 8 C 0.30 6.54 7.46 -155.05 -1.16 5.39 16 9 N -0.50 -11.59 9.14 -11.75 -0.11 -11.70 16 10 C 0.02 0.37 10.97 -16.74 -0.18 0.19 16 11 C 0.04 0.94 5.59 -106.65 -0.60 0.34 16 12 C -0.45 -11.46 9.07 -37.85 -0.34 -11.80 16 13 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 14 C 0.07 1.78 5.18 -17.34 -0.09 1.69 16 15 N -0.80 -20.15 10.91 55.54 0.61 -19.55 16 16 Si 0.91 18.16 29.59 -169.99 -5.03 13.13 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 C -0.09 -2.20 8.52 -38.99 -0.33 -2.54 16 21 C -0.11 -2.43 6.32 -39.57 -0.25 -2.68 16 22 Cl -0.12 -2.29 27.56 -51.86 -1.43 -3.72 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.81 7.45 -51.93 -0.39 0.43 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.04 0.66 8.14 -51.94 -0.42 0.23 16 32 H 0.05 0.69 6.43 -51.93 -0.33 0.35 16 33 H 0.39 6.77 6.99 -40.82 -0.29 6.49 16 34 H 0.13 2.92 8.06 -52.48 -0.42 2.50 16 35 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 36 H 0.14 3.63 6.20 -52.49 -0.33 3.30 16 LS Contribution 310.08 15.07 4.67 4.67 Total: -1.00 -25.88 310.08 -8.84 -34.72 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -4.99 Total: 9.23 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.33 Total: -13.15 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.26 Total: -44.89 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -1.43 Total: -3.72 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -25.88 -8.84 -34.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381129493.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.605 kcal (2) G-P(sol) polarization free energy of solvation -25.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds