Wall clock time and date at job start Mon Mar 30 2020 06:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47168 * 2 1 4 4 C 1.53002 * 109.47073 * 119.99928 * 2 1 3 5 5 H 1.09003 * 109.47013 * 299.99950 * 4 2 1 6 6 C 1.53001 * 109.47071 * 59.99803 * 4 2 1 7 7 N 1.46494 * 109.47363 * 179.97438 * 4 2 1 8 8 C 1.38408 * 120.00312 * 154.99628 * 7 4 2 9 9 N 1.32752 * 119.43300 * 0.02562 * 8 7 4 10 10 C 1.31472 * 121.73589 * 179.97438 * 9 8 7 11 11 C 1.40789 * 120.39244 * 0.02562 * 10 9 8 12 12 C 1.41197 * 120.56463 * 180.02562 * 11 10 9 13 13 H 1.07989 * 119.99870 * 335.70466 * 12 11 10 14 14 C 1.39869 * 119.99731 * 155.70457 * 12 11 10 15 15 N 1.30902 * 120.00227 * 343.21050 * 14 12 11 16 16 Si 1.86797 * 119.99701 * 163.20831 * 14 12 11 17 17 H 1.48499 * 109.47243 * 90.00219 * 16 14 12 18 18 H 1.48507 * 109.47092 * 209.99938 * 16 14 12 19 19 H 1.48493 * 109.47187 * 330.00106 * 16 14 12 20 20 C 1.41289 * 118.87079 * 359.97438 * 11 10 9 21 21 C 1.36672 * 118.39567 * 359.74574 * 20 11 10 22 22 Cl 1.73599 * 120.26075 * 180.25813 * 21 20 11 23 23 H 1.09003 * 109.47160 * 300.00212 * 1 2 3 24 24 H 1.08999 * 109.47089 * 59.99877 * 1 2 3 25 25 H 1.08999 * 109.47173 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46797 * 239.99393 * 2 1 3 27 27 H 1.09002 * 109.47757 * 59.99981 * 3 2 1 28 28 H 1.09001 * 109.47039 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47216 * 300.00045 * 3 2 1 30 30 H 1.09007 * 109.46786 * 180.02562 * 6 4 2 31 31 H 1.08989 * 109.47546 * 60.00329 * 6 4 2 32 32 H 1.08996 * 109.47300 * 299.99667 * 6 4 2 33 33 H 0.96996 * 119.99963 * 335.00546 * 7 4 2 34 34 H 1.08004 * 119.80321 * 179.97438 * 10 9 8 35 35 H 0.97000 * 120.00180 * 180.02562 * 15 14 12 36 36 H 1.07998 * 120.79938 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1637 1.2493 7 7 3.5050 -0.7218 1.2490 8 6 4.1972 -0.8263 2.4430 9 7 3.5223 -0.9259 3.5818 10 6 4.1336 -1.0279 4.7413 11 6 5.5400 -1.0336 4.8070 12 6 6.2003 -1.1435 6.0502 13 1 5.6993 -0.8373 6.9565 14 6 7.5032 -1.6489 6.1078 15 7 7.9914 -2.3171 5.0936 16 14 8.5465 -1.3702 7.6320 17 1 8.3364 -2.4879 8.5868 18 1 9.9795 -1.3109 7.2469 19 1 8.1530 -0.0903 8.2739 20 6 6.2794 -0.9287 3.6076 21 6 5.5950 -0.8309 2.4286 22 17 6.4549 -0.7065 0.9257 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.8930 -2.6774 2.1396 31 1 1.8933 -2.6776 0.3595 32 1 0.4400 -2.1637 1.2494 33 1 3.9898 -0.6488 0.4121 34 1 3.5535 -1.1068 5.6489 35 1 8.8949 -2.6680 5.1337 36 1 7.3593 -0.9304 3.6217 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381129493.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:22 Heat of formation + Delta-G solvation = -10.202248 kcal Electronic energy + Delta-G solvation = -18270.060517 eV Core-core repulsion = 15392.364594 eV Total energy + Delta-G solvation = -2877.695923 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.62777 -38.59726 -37.26556 -35.99497 -34.26545 -32.34671 -31.37162 -30.09879 -27.82948 -26.61711 -24.55670 -23.54711 -22.60519 -20.79083 -19.27972 -18.26670 -17.61243 -16.86575 -16.03493 -15.81556 -15.42074 -15.13928 -14.84057 -14.49795 -14.25245 -14.02910 -13.58696 -13.31634 -13.15570 -13.02308 -12.92738 -12.80680 -12.66429 -12.42680 -12.35773 -12.02181 -11.80016 -11.72113 -11.63414 -11.27658 -11.18687 -10.47722 -10.09525 -9.95125 -8.69780 -8.40823 -6.17301 0.67575 1.01621 1.42908 1.43690 1.52481 1.58358 2.23893 2.66839 2.76458 3.66315 3.83896 4.07672 4.11097 4.28636 4.50111 4.57987 4.69004 4.70531 4.78035 4.86575 4.95595 5.02274 5.07783 5.10073 5.18708 5.21293 5.26767 5.32584 5.39232 5.54489 5.57424 5.82191 5.83425 6.36485 6.64307 6.79485 6.87364 6.92536 7.76039 8.35907 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.029603 B = 0.005109 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.617184 B = 5479.652699 C = 6015.136646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.141 4.141 4 C 0.167 3.833 5 H 0.060 0.940 6 C -0.155 4.155 7 N -0.725 5.725 8 C 0.300 3.700 9 N -0.508 5.508 10 C 0.009 3.991 11 C 0.008 3.992 12 C -0.484 4.484 13 H 0.085 0.915 14 C 0.034 3.966 15 N -0.833 5.833 16 Si 0.982 3.018 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.258 1.258 20 C -0.103 4.103 21 C -0.118 4.118 22 Cl -0.088 7.088 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.400 0.600 34 H 0.146 0.854 35 H 0.287 0.713 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.617 3.284 -8.007 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 C -0.199 4.199 4 C 0.062 3.938 5 H 0.078 0.922 6 C -0.214 4.214 7 N -0.364 5.364 8 C 0.065 3.935 9 N -0.224 5.224 10 C -0.149 4.149 11 C 0.003 3.997 12 C -0.515 4.515 13 H 0.103 0.897 14 C -0.180 4.180 15 N -0.460 5.460 16 Si 0.803 3.197 17 H -0.188 1.188 18 H -0.195 1.195 19 H -0.181 1.181 20 C -0.130 4.130 21 C -0.151 4.151 22 Cl -0.060 7.060 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.237 0.763 34 H 0.163 0.837 35 H 0.098 0.902 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.427 3.164 -8.174 12.159 hybrid contribution 2.027 -0.155 0.394 2.071 sum -6.400 3.009 -7.780 10.514 Atomic orbital electron populations 1.21820 0.92961 1.02628 1.02385 1.21356 0.97371 0.96059 0.96850 1.21766 1.00515 0.95844 1.01738 1.20754 0.79341 0.95472 0.98275 0.92197 1.22189 1.01532 0.97001 1.00684 1.43997 1.05342 1.83371 1.03720 1.17722 0.85691 1.02352 0.87737 1.66853 1.39418 1.18597 0.97518 1.22597 0.91764 1.06661 0.93888 1.18575 0.92586 0.94568 0.94002 1.19569 0.99348 1.38675 0.93876 0.89691 1.26697 0.98835 0.91588 1.00832 1.69855 1.17334 1.25575 1.33232 0.85201 0.77044 0.79902 0.77589 1.18811 1.19549 1.18142 1.21240 1.00355 1.00956 0.90451 1.21021 0.91217 1.15519 0.87374 1.98231 1.77327 1.97175 1.33237 0.92871 0.91054 0.91579 0.90420 0.93690 0.93950 0.91066 0.95247 0.92740 0.90163 0.76296 0.83691 0.90194 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.84 71.98 0.64 -1.86 16 2 C -0.10 -2.18 2.55 -10.79 -0.03 -2.21 16 3 C -0.14 -3.24 9.04 71.98 0.65 -2.59 16 4 C 0.17 5.01 2.16 44.99 0.10 5.11 16 5 H 0.06 2.08 7.52 -2.39 -0.02 2.06 16 6 C -0.16 -4.44 9.14 71.98 0.66 -3.78 16 7 N -0.73 -25.85 4.46 -324.23 -1.45 -27.29 16 8 C 0.30 13.33 7.46 133.32 0.99 14.32 16 9 N -0.51 -23.71 9.14 -191.08 -1.75 -25.45 16 10 C 0.01 0.44 10.97 85.37 0.94 1.38 16 11 C 0.01 0.44 5.59 -21.18 -0.12 0.32 16 12 C -0.48 -25.05 9.07 23.39 0.21 -24.84 16 13 H 0.09 4.16 7.90 -2.92 -0.02 4.14 16 14 C 0.03 1.69 5.18 85.23 0.44 2.13 16 15 N -0.83 -42.84 10.91 21.82 0.24 -42.60 16 16 Si 0.98 37.37 29.59 68.60 2.03 39.40 16 17 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 18 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 19 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 20 C -0.10 -5.32 8.52 22.65 0.19 -5.12 16 21 C -0.12 -5.51 6.32 22.28 0.14 -5.37 16 22 Cl -0.09 -3.40 27.56 -2.72 -0.07 -3.48 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.09 6.43 -2.39 -0.02 1.07 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.04 1.10 7.45 -2.39 -0.02 1.08 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.85 6.43 -2.39 -0.02 1.84 16 33 H 0.40 13.20 6.99 -92.71 -0.65 12.56 16 34 H 0.15 6.52 8.06 -2.91 -0.02 6.50 16 35 H 0.29 13.48 8.30 -92.71 -0.77 12.72 16 36 H 0.12 6.67 6.20 -2.91 -0.02 6.66 16 Total: -1.00 -56.29 310.08 4.25 -52.04 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.44 Total: 29.87 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 4.81 Total: -22.49 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -2.96 Total: -95.35 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Atomic # 17 Polarization: -3.40 SS G_CDS: -0.07 Total: -3.48 kcal Total: -56.29 4.25 -52.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381129493.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.841 kcal (2) G-P(sol) polarization free energy of solvation -56.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds