Wall clock time and date at job start Mon Mar 30 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47377 * 2 1 4 4 N 1.46896 * 109.47355 * 119.99858 * 2 1 3 5 5 C 1.50700 * 109.47114 * 239.99969 * 2 1 3 6 6 C 1.38240 * 120.04270 * 106.70772 * 5 2 1 7 7 Cl 1.73596 * 119.98037 * 359.95601 * 6 5 2 8 8 C 1.38387 * 120.04599 * 179.97438 * 6 5 2 9 9 C 1.38289 * 120.13998 * 359.97438 * 8 6 5 10 10 C 1.38093 * 120.08149 * 359.72210 * 9 8 6 11 11 C 1.38868 * 120.04329 * 286.68228 * 5 2 1 12 12 N 1.39672 * 120.06921 * 0.02766 * 11 5 2 13 13 C 1.46897 * 110.99812 * 243.95365 * 12 11 5 14 14 C 1.46895 * 111.00327 * 119.99897 * 12 11 5 15 15 C 1.50698 * 109.47228 * 190.00375 * 14 12 11 16 16 H 1.07999 * 120.00064 * 359.97438 * 15 14 12 17 17 C 1.37874 * 119.99897 * 180.02562 * 15 14 12 18 18 N 1.31522 * 120.00233 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00051 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47353 * 59.99409 * 19 17 15 21 21 H 1.48501 * 109.47455 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47035 * 299.99480 * 19 17 15 23 23 H 1.09000 * 109.47377 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47398 * 300.00225 * 1 2 3 25 25 H 1.09005 * 109.47306 * 60.00093 * 1 2 3 26 26 H 1.00901 * 111.00165 * 51.67141 * 4 2 1 27 27 H 1.00900 * 111.00495 * 175.62908 * 4 2 1 28 28 H 1.07999 * 119.92979 * 180.02562 * 8 6 5 29 29 H 1.07994 * 119.95941 * 180.02562 * 9 8 6 30 30 H 1.08002 * 120.02116 * 180.30160 * 10 9 8 31 31 H 1.08997 * 109.47124 * 296.04099 * 13 12 11 32 32 H 1.09002 * 109.47619 * 56.04732 * 13 12 11 33 33 H 1.09005 * 109.47069 * 176.04637 * 13 12 11 34 34 H 1.09001 * 109.47494 * 69.99564 * 14 12 11 35 35 H 1.09001 * 109.46608 * 310.00272 * 14 12 11 36 36 H 0.96991 * 119.99973 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.0322 -0.7104 -1.2305 6 6 2.5873 0.0133 -2.2693 7 17 2.7047 1.7416 -2.1569 8 6 3.0491 -0.6391 -3.3990 9 6 2.9574 -2.0158 -3.4921 10 6 2.4096 -2.7447 -2.4550 11 6 1.9386 -2.0929 -1.3220 12 7 1.3784 -2.8273 -0.2743 13 6 2.3727 -3.7231 0.3313 14 6 0.2007 -3.5785 -0.7287 15 6 -0.5170 -4.1569 0.4635 16 1 -0.1361 -3.9841 1.4592 17 6 -1.6593 -4.9076 0.2830 18 7 -2.1230 -5.1184 -0.9296 19 14 -2.5486 -5.6252 1.7607 20 1 -2.9802 -4.5256 2.6607 21 1 -3.7392 -6.3845 1.3013 22 1 -1.6335 -6.5355 2.4950 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.5894 -1.6002 1.2939 27 1 3.0257 -0.7685 1.1877 28 1 3.4828 -0.0719 -4.2094 29 1 3.3191 -2.5219 -4.3749 30 1 2.3430 -3.8203 -2.5267 31 1 2.6917 -4.4619 -0.4039 32 1 3.2342 -3.1412 0.6591 33 1 1.9300 -4.2310 1.1882 34 1 0.5172 -4.3858 -1.3892 35 1 -0.4707 -2.9101 -1.2679 36 1 -2.9268 -5.6462 -1.0565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381268019.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:36 Heat of formation + Delta-G solvation = 25.353351 kcal Electronic energy + Delta-G solvation = -18983.295439 eV Core-core repulsion = 16107.141323 eV Total energy + Delta-G solvation = -2876.154117 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.00708 -36.82347 -35.75497 -35.16499 -32.65117 -30.01249 -29.48467 -28.22261 -27.16285 -25.22604 -22.92038 -22.76880 -20.72557 -19.89718 -16.89960 -16.49528 -15.85178 -15.39784 -14.86120 -14.63742 -14.22467 -14.14595 -13.82710 -13.32981 -13.23760 -12.70545 -12.19140 -12.05863 -11.78291 -11.40254 -11.37070 -11.24353 -11.15878 -11.07166 -10.95181 -10.73893 -10.66184 -10.21964 -10.07960 -9.42764 -8.64120 -8.54498 -8.38165 -8.16322 -7.55154 -6.13297 -4.16371 1.35571 1.46074 2.26182 3.28521 3.33323 3.36012 3.78632 4.32165 4.62722 4.94090 5.12767 5.18702 5.23226 5.43078 5.51845 5.62724 5.80406 5.84787 5.93582 6.03961 6.08739 6.28070 6.42864 6.44254 6.51075 6.55388 6.73825 6.82051 7.00300 7.10918 7.20131 7.67330 7.76637 7.81768 7.99142 8.26007 8.37543 8.89885 9.48715 10.97170 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.025869 B = 0.005953 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.117928 B = 4702.698809 C = 5087.125316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.142 3.858 3 H 0.079 0.921 4 N -0.841 5.841 5 C -0.098 4.098 6 C -0.027 4.027 7 Cl -0.076 7.076 8 C -0.126 4.126 9 C -0.105 4.105 10 C -0.143 4.143 11 C 0.126 3.874 12 N -0.508 5.508 13 C 0.035 3.965 14 C 0.200 3.800 15 C -0.513 4.513 16 H 0.066 0.934 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.371 0.629 27 H 0.323 0.677 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.022 0.978 32 H 0.047 0.953 33 H 0.085 0.915 34 H -0.002 1.002 35 H 0.033 0.967 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.236 7.822 -3.027 13.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.097 0.903 4 N -0.376 5.376 5 C -0.102 4.102 6 C -0.055 4.055 7 Cl -0.047 7.047 8 C -0.145 4.145 9 C -0.124 4.124 10 C -0.163 4.163 11 C 0.031 3.969 12 N -0.230 5.230 13 C -0.112 4.112 14 C 0.077 3.923 15 C -0.552 4.552 16 H 0.084 0.916 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.727 3.273 20 H -0.200 1.200 21 H -0.214 1.214 22 H -0.202 1.202 23 H 0.102 0.898 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.193 0.807 27 H 0.134 0.866 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.016 0.984 35 H 0.051 0.949 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.555 8.766 -2.286 13.167 hybrid contribution 0.071 -1.640 -0.875 1.860 sum 9.626 7.126 -3.162 12.387 Atomic orbital electron populations 1.21821 0.93308 1.04427 1.00634 1.20268 0.96066 0.96316 0.84401 0.90275 1.59334 1.10232 1.30593 1.37435 1.20811 0.98883 0.93109 0.97359 1.20664 1.04181 0.83982 0.96634 1.98329 1.96996 1.11408 1.98000 1.20919 1.01997 0.94636 0.96939 1.20909 0.99712 0.93106 0.98695 1.21923 0.98959 1.00923 0.94523 1.18867 0.94606 0.91909 0.91529 1.59815 1.07948 1.28014 1.27253 1.22359 0.93862 0.94816 1.00124 1.19835 0.85039 0.91272 0.96112 1.21040 1.09485 1.31606 0.93035 0.91582 1.24968 0.97111 0.96252 0.95981 1.69944 1.23082 1.39730 1.20694 0.86530 0.78999 0.79184 0.82549 1.19991 1.21386 1.20230 0.89775 0.92313 0.93421 0.80657 0.86617 0.85538 0.85654 0.85618 0.95908 0.93383 0.89637 0.98411 0.94913 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.30 37.15 0.35 -2.21 16 2 C 0.14 2.34 3.32 -68.87 -0.23 2.11 16 3 H 0.08 1.25 6.33 -51.93 -0.33 0.92 16 4 N -0.84 -13.86 9.06 -5.66 -0.05 -13.91 16 5 C -0.10 -1.63 4.89 -104.39 -0.51 -2.14 16 6 C -0.03 -0.41 6.31 -39.53 -0.25 -0.65 16 7 Cl -0.08 -1.02 27.06 -51.86 -1.40 -2.42 16 8 C -0.13 -1.73 9.83 -39.51 -0.39 -2.12 16 9 C -0.11 -1.47 10.04 -39.62 -0.40 -1.87 16 10 C -0.14 -2.37 8.70 -39.37 -0.34 -2.71 16 11 C 0.13 2.25 4.43 -83.79 -0.37 1.88 16 12 N -0.51 -9.81 1.27 -180.34 -0.23 -10.04 16 13 C 0.04 0.61 8.24 60.06 0.50 1.10 16 14 C 0.20 4.81 3.75 -4.98 -0.02 4.79 16 15 C -0.51 -13.34 8.52 -34.44 -0.29 -13.63 16 16 H 0.07 1.68 7.10 -52.49 -0.37 1.31 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -25.54 13.29 55.43 0.74 -24.80 16 19 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H 0.08 1.75 6.35 -51.93 -0.33 1.42 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.37 6.70 5.46 -39.29 -0.21 6.49 16 27 H 0.32 4.86 8.98 -39.29 -0.35 4.50 16 28 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.13 2.11 7.16 -52.49 -0.38 1.73 16 31 H 0.02 0.39 7.46 -51.93 -0.39 0.00 16 32 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.08 1.55 6.86 -51.93 -0.36 1.20 16 34 H 0.00 -0.05 7.49 -51.93 -0.39 -0.44 16 35 H 0.03 0.88 7.72 -51.93 -0.40 0.48 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 304.04 15.07 4.58 4.58 Total: -1.00 -26.97 304.04 -8.20 -35.16 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -4.76 Total: 9.57 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.06 Total: -13.95 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.46 Total: -48.75 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.40 Total: -2.42 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.97 -8.20 -35.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381268019.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.516 kcal (2) G-P(sol) polarization free energy of solvation -26.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds