Wall clock time and date at job start Mon Mar 30 2020 06:42:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 H 1.09000 * 109.47377 * 2 1
4 4 N 1.46896 * 109.47355 * 119.99858 * 2 1 3
5 5 C 1.50700 * 109.47114 * 239.99969 * 2 1 3
6 6 C 1.38240 * 120.04270 * 106.70772 * 5 2 1
7 7 Cl 1.73596 * 119.98037 * 359.95601 * 6 5 2
8 8 C 1.38387 * 120.04599 * 179.97438 * 6 5 2
9 9 C 1.38289 * 120.13998 * 359.97438 * 8 6 5
10 10 C 1.38093 * 120.08149 * 359.72210 * 9 8 6
11 11 C 1.38868 * 120.04329 * 286.68228 * 5 2 1
12 12 N 1.39672 * 120.06921 * 0.02766 * 11 5 2
13 13 C 1.46897 * 110.99812 * 243.95365 * 12 11 5
14 14 C 1.46895 * 111.00327 * 119.99897 * 12 11 5
15 15 C 1.50698 * 109.47228 * 190.00375 * 14 12 11
16 16 H 1.07999 * 120.00064 * 359.97438 * 15 14 12
17 17 C 1.37874 * 119.99897 * 180.02562 * 15 14 12
18 18 N 1.31522 * 120.00233 * 359.97438 * 17 15 14
19 19 Si 1.86798 * 120.00051 * 179.97438 * 17 15 14
20 20 H 1.48499 * 109.47353 * 59.99409 * 19 17 15
21 21 H 1.48501 * 109.47455 * 179.97438 * 19 17 15
22 22 H 1.48502 * 109.47035 * 299.99480 * 19 17 15
23 23 H 1.09000 * 109.47377 * 180.02562 * 1 2 3
24 24 H 1.09001 * 109.47398 * 300.00225 * 1 2 3
25 25 H 1.09005 * 109.47306 * 60.00093 * 1 2 3
26 26 H 1.00901 * 111.00165 * 51.67141 * 4 2 1
27 27 H 1.00900 * 111.00495 * 175.62908 * 4 2 1
28 28 H 1.07999 * 119.92979 * 180.02562 * 8 6 5
29 29 H 1.07994 * 119.95941 * 180.02562 * 9 8 6
30 30 H 1.08002 * 120.02116 * 180.30160 * 10 9 8
31 31 H 1.08997 * 109.47124 * 296.04099 * 13 12 11
32 32 H 1.09002 * 109.47619 * 56.04732 * 13 12 11
33 33 H 1.09005 * 109.47069 * 176.04637 * 13 12 11
34 34 H 1.09001 * 109.47494 * 69.99564 * 14 12 11
35 35 H 1.09001 * 109.46608 * 310.00272 * 14 12 11
36 36 H 0.96991 * 119.99973 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0196 -0.6924 1.1994
5 6 2.0322 -0.7104 -1.2305
6 6 2.5873 0.0133 -2.2693
7 17 2.7047 1.7416 -2.1569
8 6 3.0491 -0.6391 -3.3990
9 6 2.9574 -2.0158 -3.4921
10 6 2.4096 -2.7447 -2.4550
11 6 1.9386 -2.0929 -1.3220
12 7 1.3784 -2.8273 -0.2743
13 6 2.3727 -3.7231 0.3313
14 6 0.2007 -3.5785 -0.7287
15 6 -0.5170 -4.1569 0.4635
16 1 -0.1361 -3.9841 1.4592
17 6 -1.6593 -4.9076 0.2830
18 7 -2.1230 -5.1184 -0.9296
19 14 -2.5486 -5.6252 1.7607
20 1 -2.9802 -4.5256 2.6607
21 1 -3.7392 -6.3845 1.3013
22 1 -1.6335 -6.5355 2.4950
23 1 -0.3634 -1.0276 0.0005
24 1 -0.3634 0.5139 0.8900
25 1 -0.3634 0.5138 -0.8900
26 1 1.5894 -1.6002 1.2939
27 1 3.0257 -0.7685 1.1877
28 1 3.4828 -0.0719 -4.2094
29 1 3.3191 -2.5219 -4.3749
30 1 2.3430 -3.8203 -2.5267
31 1 2.6917 -4.4619 -0.4039
32 1 3.2342 -3.1412 0.6591
33 1 1.9300 -4.2310 1.1882
34 1 0.5172 -4.3858 -1.3892
35 1 -0.4707 -2.9101 -1.2679
36 1 -2.9268 -5.6462 -1.0565
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000381268019.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:42:36
Heat of formation + Delta-G solvation = 10.571627 kcal
Electronic energy + Delta-G solvation = -18983.936423 eV
Core-core repulsion = 16107.141323 eV
Total energy + Delta-G solvation = -2876.795100 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.104 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.32125 -38.12339 -37.02324 -36.50981 -34.64620 -31.24896 -30.85504 -29.75615
-28.84222 -26.79363 -24.55470 -24.07676 -22.21749 -21.20862 -18.61617 -17.97824
-17.27857 -16.83809 -16.53832 -15.93186 -15.62666 -15.57264 -15.34001 -14.73313
-14.63262 -14.12167 -13.92506 -13.35887 -13.29839 -12.94461 -12.82383 -12.73285
-12.56659 -12.48659 -12.44672 -12.30868 -12.15533 -11.93835 -11.52823 -11.37920
-10.61127 -9.91523 -9.62579 -9.53861 -9.03899 -8.20405 -6.30090 0.12509
0.23962 1.10515 1.43502 1.45886 1.53190 2.40259 2.56462 3.10723
3.15766 3.72854 3.90110 4.02070 4.13393 4.27698 4.36105 4.48230
4.54014 4.59849 4.63187 4.79453 4.97907 5.00651 5.03698 5.14645
5.19767 5.21431 5.33207 5.46122 5.53432 5.66339 5.74629 6.05347
6.09200 6.47788 6.67960 6.82204 6.90337 7.39573 8.90261
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.025869 B = 0.005953 C = 0.005503
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1082.117928 B = 4702.698809 C = 5087.125316
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.145 3.855
3 H 0.091 0.909
4 N -0.842 5.842
5 C -0.107 4.107
6 C -0.032 4.032
7 Cl -0.059 7.059
8 C -0.116 4.116
9 C -0.096 4.096
10 C -0.159 4.159
11 C 0.098 3.902
12 N -0.501 5.501
13 C 0.038 3.962
14 C 0.224 3.776
15 C -0.519 4.519
16 H 0.070 0.930
17 C 0.006 3.994
18 N -0.934 5.934
19 Si 0.965 3.035
20 H -0.270 1.270
21 H -0.288 1.288
22 H -0.266 1.266
23 H 0.048 0.952
24 H 0.064 0.936
25 H 0.052 0.948
26 H 0.362 0.638
27 H 0.333 0.667
28 H 0.159 0.841
29 H 0.158 0.842
30 H 0.114 0.886
31 H 0.020 0.980
32 H 0.074 0.926
33 H 0.074 0.926
34 H -0.029 1.029
35 H -0.003 1.003
36 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.564 8.864 -3.047 14.885
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C 0.033 3.967
3 H 0.109 0.891
4 N -0.376 5.376
5 C -0.111 4.111
6 C -0.060 4.060
7 Cl -0.030 7.030
8 C -0.134 4.134
9 C -0.115 4.115
10 C -0.179 4.179
11 C 0.004 3.996
12 N -0.223 5.223
13 C -0.108 4.108
14 C 0.099 3.901
15 C -0.557 4.557
16 H 0.088 0.912
17 C -0.192 4.192
18 N -0.574 5.574
19 Si 0.790 3.210
20 H -0.195 1.195
21 H -0.214 1.214
22 H -0.191 1.191
23 H 0.067 0.933
24 H 0.083 0.917
25 H 0.071 0.929
26 H 0.183 0.817
27 H 0.144 0.856
28 H 0.177 0.823
29 H 0.175 0.825
30 H 0.133 0.867
31 H 0.039 0.961
32 H 0.093 0.907
33 H 0.093 0.907
34 H -0.011 1.011
35 H 0.015 0.985
36 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 10.918 9.828 -2.297 14.869
hybrid contribution -0.264 -1.866 -0.945 2.108
sum 10.655 7.962 -3.242 13.691
Atomic orbital electron populations
1.21742 0.94541 1.02180 1.01194 1.20237 0.95008 0.96875 0.84585
0.89095 1.59314 1.10891 1.29881 1.37531 1.20786 0.99617 0.92620
0.98083 1.20817 1.03688 0.84962 0.96539 1.98336 1.96870 1.09832
1.97959 1.21306 1.00488 0.94611 0.97042 1.21243 0.98201 0.93381
0.98691 1.21955 0.99990 1.00676 0.95263 1.18947 0.96321 0.92457
0.91908 1.59629 1.07382 1.27392 1.27906 1.22354 0.94099 0.94944
0.99414 1.19334 0.86292 0.89826 0.94618 1.21377 1.09549 1.31068
0.93723 0.91202 1.25829 0.98057 0.96779 0.98580 1.70078 1.23650
1.40815 1.22842 0.85492 0.77779 0.78519 0.79180 1.19515 1.21357
1.19063 0.93297 0.91690 0.92911 0.81706 0.85584 0.82322 0.82467
0.86750 0.96143 0.90695 0.90743 1.01116 0.98476 0.92793
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.94 9.30 71.98 0.67 -4.27 16
2 C 0.15 4.67 3.32 44.17 0.15 4.81 16
3 H 0.09 2.70 6.33 -2.39 -0.02 2.69 16
4 N -0.84 -27.03 9.06 -171.82 -1.56 -28.59 16
5 C -0.11 -3.48 4.89 -19.71 -0.10 -3.57 16
6 C -0.03 -0.90 6.31 22.31 0.14 -0.76 16
7 Cl -0.06 -1.42 27.06 -2.72 -0.07 -1.50 16
8 C -0.12 -2.81 9.83 22.32 0.22 -2.59 16
9 C -0.10 -2.47 10.04 22.25 0.22 -2.25 16
10 C -0.16 -5.20 8.70 22.40 0.19 -5.01 16
11 C 0.10 3.52 4.43 38.21 0.17 3.69 16
12 N -0.50 -19.82 1.27 -724.46 -0.92 -20.74 16
13 C 0.04 1.34 8.24 127.69 1.05 2.39 16
14 C 0.22 11.24 3.75 85.56 0.32 11.56 16
15 C -0.52 -27.68 8.52 25.60 0.22 -27.46 16
16 H 0.07 3.60 7.10 -2.91 -0.02 3.58 16
17 C 0.01 0.33 5.46 84.65 0.46 0.79 16
18 N -0.93 -54.80 13.29 21.45 0.28 -54.51 16
19 Si 0.97 43.13 29.54 68.60 2.03 45.15 16
20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16
21 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16
22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16
23 H 0.05 2.09 6.35 -2.39 -0.02 2.08 16
24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16
25 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16
26 H 0.36 13.02 5.46 -89.69 -0.49 12.53 16
27 H 0.33 9.52 8.98 -89.69 -0.81 8.71 16
28 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16
29 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16
30 H 0.11 3.94 7.16 -2.91 -0.02 3.92 16
31 H 0.02 0.70 7.46 -2.39 -0.02 0.69 16
32 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16
33 H 0.07 2.73 6.86 -2.38 -0.02 2.71 16
34 H -0.03 -1.57 7.49 -2.39 -0.02 -1.59 16
35 H 0.00 -0.16 7.72 -2.39 -0.02 -0.18 16
36 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16
Total: -1.00 -59.02 304.04 3.29 -55.73
By element:
Atomic # 1 Polarization: 27.32 SS G_CDS: -0.19 Total: 27.13 kcal
Atomic # 6 Polarization: -26.39 SS G_CDS: 3.72 Total: -22.67 kcal
Atomic # 7 Polarization: -101.65 SS G_CDS: -2.19 Total: -103.84 kcal
Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal
Atomic # 17 Polarization: -1.42 SS G_CDS: -0.07 Total: -1.50 kcal
Total: -59.02 3.29 -55.73 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000381268019.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.303 kcal
(2) G-P(sol) polarization free energy of solvation -59.023 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.280 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.732 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.572 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds