Wall clock time and date at job start Mon Mar 30 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47377 * 2 1 4 4 N 1.46896 * 109.47355 * 119.99858 * 2 1 3 5 5 C 1.50700 * 109.47114 * 239.99969 * 2 1 3 6 6 C 1.38240 * 120.04270 * 106.70772 * 5 2 1 7 7 Cl 1.73596 * 119.98037 * 359.95601 * 6 5 2 8 8 C 1.38387 * 120.04599 * 179.97438 * 6 5 2 9 9 C 1.38289 * 120.13998 * 359.97438 * 8 6 5 10 10 C 1.38093 * 120.08149 * 359.72210 * 9 8 6 11 11 C 1.38868 * 120.04329 * 286.68228 * 5 2 1 12 12 N 1.39672 * 120.06921 * 0.02766 * 11 5 2 13 13 C 1.46897 * 110.99812 * 243.95365 * 12 11 5 14 14 C 1.46895 * 111.00327 * 119.99897 * 12 11 5 15 15 C 1.50698 * 109.47228 * 190.00375 * 14 12 11 16 16 H 1.07999 * 120.00064 * 359.97438 * 15 14 12 17 17 C 1.37874 * 119.99897 * 180.02562 * 15 14 12 18 18 N 1.31522 * 120.00233 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00051 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47353 * 59.99409 * 19 17 15 21 21 H 1.48501 * 109.47455 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47035 * 299.99480 * 19 17 15 23 23 H 1.09000 * 109.47377 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47398 * 300.00225 * 1 2 3 25 25 H 1.09005 * 109.47306 * 60.00093 * 1 2 3 26 26 H 1.00901 * 111.00165 * 51.67141 * 4 2 1 27 27 H 1.00900 * 111.00495 * 175.62908 * 4 2 1 28 28 H 1.07999 * 119.92979 * 180.02562 * 8 6 5 29 29 H 1.07994 * 119.95941 * 180.02562 * 9 8 6 30 30 H 1.08002 * 120.02116 * 180.30160 * 10 9 8 31 31 H 1.08997 * 109.47124 * 296.04099 * 13 12 11 32 32 H 1.09002 * 109.47619 * 56.04732 * 13 12 11 33 33 H 1.09005 * 109.47069 * 176.04637 * 13 12 11 34 34 H 1.09001 * 109.47494 * 69.99564 * 14 12 11 35 35 H 1.09001 * 109.46608 * 310.00272 * 14 12 11 36 36 H 0.96991 * 119.99973 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.0322 -0.7104 -1.2305 6 6 2.5873 0.0133 -2.2693 7 17 2.7047 1.7416 -2.1569 8 6 3.0491 -0.6391 -3.3990 9 6 2.9574 -2.0158 -3.4921 10 6 2.4096 -2.7447 -2.4550 11 6 1.9386 -2.0929 -1.3220 12 7 1.3784 -2.8273 -0.2743 13 6 2.3727 -3.7231 0.3313 14 6 0.2007 -3.5785 -0.7287 15 6 -0.5170 -4.1569 0.4635 16 1 -0.1361 -3.9841 1.4592 17 6 -1.6593 -4.9076 0.2830 18 7 -2.1230 -5.1184 -0.9296 19 14 -2.5486 -5.6252 1.7607 20 1 -2.9802 -4.5256 2.6607 21 1 -3.7392 -6.3845 1.3013 22 1 -1.6335 -6.5355 2.4950 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.5894 -1.6002 1.2939 27 1 3.0257 -0.7685 1.1877 28 1 3.4828 -0.0719 -4.2094 29 1 3.3191 -2.5219 -4.3749 30 1 2.3430 -3.8203 -2.5267 31 1 2.6917 -4.4619 -0.4039 32 1 3.2342 -3.1412 0.6591 33 1 1.9300 -4.2310 1.1882 34 1 0.5172 -4.3858 -1.3892 35 1 -0.4707 -2.9101 -1.2679 36 1 -2.9268 -5.6462 -1.0565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381268019.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:36 Heat of formation + Delta-G solvation = 10.571627 kcal Electronic energy + Delta-G solvation = -18983.936423 eV Core-core repulsion = 16107.141323 eV Total energy + Delta-G solvation = -2876.795100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.32125 -38.12339 -37.02324 -36.50981 -34.64620 -31.24896 -30.85504 -29.75615 -28.84222 -26.79363 -24.55470 -24.07676 -22.21749 -21.20862 -18.61617 -17.97824 -17.27857 -16.83809 -16.53832 -15.93186 -15.62666 -15.57264 -15.34001 -14.73313 -14.63262 -14.12167 -13.92506 -13.35887 -13.29839 -12.94461 -12.82383 -12.73285 -12.56659 -12.48659 -12.44672 -12.30868 -12.15533 -11.93835 -11.52823 -11.37920 -10.61127 -9.91523 -9.62579 -9.53861 -9.03899 -8.20405 -6.30090 0.12509 0.23962 1.10515 1.43502 1.45886 1.53190 2.40259 2.56462 3.10723 3.15766 3.72854 3.90110 4.02070 4.13393 4.27698 4.36105 4.48230 4.54014 4.59849 4.63187 4.79453 4.97907 5.00651 5.03698 5.14645 5.19767 5.21431 5.33207 5.46122 5.53432 5.66339 5.74629 6.05347 6.09200 6.47788 6.67960 6.82204 6.90337 7.39573 8.90261 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.025869 B = 0.005953 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.117928 B = 4702.698809 C = 5087.125316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.145 3.855 3 H 0.091 0.909 4 N -0.842 5.842 5 C -0.107 4.107 6 C -0.032 4.032 7 Cl -0.059 7.059 8 C -0.116 4.116 9 C -0.096 4.096 10 C -0.159 4.159 11 C 0.098 3.902 12 N -0.501 5.501 13 C 0.038 3.962 14 C 0.224 3.776 15 C -0.519 4.519 16 H 0.070 0.930 17 C 0.006 3.994 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.270 1.270 21 H -0.288 1.288 22 H -0.266 1.266 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.362 0.638 27 H 0.333 0.667 28 H 0.159 0.841 29 H 0.158 0.842 30 H 0.114 0.886 31 H 0.020 0.980 32 H 0.074 0.926 33 H 0.074 0.926 34 H -0.029 1.029 35 H -0.003 1.003 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.564 8.864 -3.047 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.033 3.967 3 H 0.109 0.891 4 N -0.376 5.376 5 C -0.111 4.111 6 C -0.060 4.060 7 Cl -0.030 7.030 8 C -0.134 4.134 9 C -0.115 4.115 10 C -0.179 4.179 11 C 0.004 3.996 12 N -0.223 5.223 13 C -0.108 4.108 14 C 0.099 3.901 15 C -0.557 4.557 16 H 0.088 0.912 17 C -0.192 4.192 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.195 1.195 21 H -0.214 1.214 22 H -0.191 1.191 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.183 0.817 27 H 0.144 0.856 28 H 0.177 0.823 29 H 0.175 0.825 30 H 0.133 0.867 31 H 0.039 0.961 32 H 0.093 0.907 33 H 0.093 0.907 34 H -0.011 1.011 35 H 0.015 0.985 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.918 9.828 -2.297 14.869 hybrid contribution -0.264 -1.866 -0.945 2.108 sum 10.655 7.962 -3.242 13.691 Atomic orbital electron populations 1.21742 0.94541 1.02180 1.01194 1.20237 0.95008 0.96875 0.84585 0.89095 1.59314 1.10891 1.29881 1.37531 1.20786 0.99617 0.92620 0.98083 1.20817 1.03688 0.84962 0.96539 1.98336 1.96870 1.09832 1.97959 1.21306 1.00488 0.94611 0.97042 1.21243 0.98201 0.93381 0.98691 1.21955 0.99990 1.00676 0.95263 1.18947 0.96321 0.92457 0.91908 1.59629 1.07382 1.27392 1.27906 1.22354 0.94099 0.94944 0.99414 1.19334 0.86292 0.89826 0.94618 1.21377 1.09549 1.31068 0.93723 0.91202 1.25829 0.98057 0.96779 0.98580 1.70078 1.23650 1.40815 1.22842 0.85492 0.77779 0.78519 0.79180 1.19515 1.21357 1.19063 0.93297 0.91690 0.92911 0.81706 0.85584 0.82322 0.82467 0.86750 0.96143 0.90695 0.90743 1.01116 0.98476 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.30 71.98 0.67 -4.27 16 2 C 0.15 4.67 3.32 44.17 0.15 4.81 16 3 H 0.09 2.70 6.33 -2.39 -0.02 2.69 16 4 N -0.84 -27.03 9.06 -171.82 -1.56 -28.59 16 5 C -0.11 -3.48 4.89 -19.71 -0.10 -3.57 16 6 C -0.03 -0.90 6.31 22.31 0.14 -0.76 16 7 Cl -0.06 -1.42 27.06 -2.72 -0.07 -1.50 16 8 C -0.12 -2.81 9.83 22.32 0.22 -2.59 16 9 C -0.10 -2.47 10.04 22.25 0.22 -2.25 16 10 C -0.16 -5.20 8.70 22.40 0.19 -5.01 16 11 C 0.10 3.52 4.43 38.21 0.17 3.69 16 12 N -0.50 -19.82 1.27 -724.46 -0.92 -20.74 16 13 C 0.04 1.34 8.24 127.69 1.05 2.39 16 14 C 0.22 11.24 3.75 85.56 0.32 11.56 16 15 C -0.52 -27.68 8.52 25.60 0.22 -27.46 16 16 H 0.07 3.60 7.10 -2.91 -0.02 3.58 16 17 C 0.01 0.33 5.46 84.65 0.46 0.79 16 18 N -0.93 -54.80 13.29 21.45 0.28 -54.51 16 19 Si 0.97 43.13 29.54 68.60 2.03 45.15 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H 0.05 2.09 6.35 -2.39 -0.02 2.08 16 24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.36 13.02 5.46 -89.69 -0.49 12.53 16 27 H 0.33 9.52 8.98 -89.69 -0.81 8.71 16 28 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 29 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.11 3.94 7.16 -2.91 -0.02 3.92 16 31 H 0.02 0.70 7.46 -2.39 -0.02 0.69 16 32 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 33 H 0.07 2.73 6.86 -2.38 -0.02 2.71 16 34 H -0.03 -1.57 7.49 -2.39 -0.02 -1.59 16 35 H 0.00 -0.16 7.72 -2.39 -0.02 -0.18 16 36 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -59.02 304.04 3.29 -55.73 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -0.19 Total: 27.13 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 3.72 Total: -22.67 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -2.19 Total: -103.84 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.07 Total: -1.50 kcal Total: -59.02 3.29 -55.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381268019.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.303 kcal (2) G-P(sol) polarization free energy of solvation -59.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds