Wall clock time and date at job start Mon Mar 30 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47558 * 2 1 4 4 C 1.52996 * 109.47463 * 120.00419 * 2 1 3 5 5 C 1.50698 * 109.47511 * 185.00110 * 4 2 1 6 6 N 1.31880 * 119.62401 * 270.02191 * 5 4 2 7 7 C 1.31853 * 121.73670 * 179.67841 * 6 5 4 8 8 C 1.38234 * 120.79237 * 0.59017 * 7 6 5 9 9 C 1.38612 * 119.17341 * 359.42212 * 8 7 6 10 10 C 1.38306 * 119.63067 * 89.99560 * 5 4 2 11 11 Cl 1.73602 * 120.43071 * 0.02562 * 10 5 4 12 12 N 1.46905 * 109.46844 * 240.00311 * 2 1 3 13 13 C 1.46902 * 110.99811 * 85.00150 * 12 2 1 14 14 C 1.53003 * 109.46546 * 179.97438 * 13 12 2 15 15 C 1.50707 * 109.46659 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99846 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99935 * 180.02562 * 15 14 13 18 18 N 1.31525 * 119.99978 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00205 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47033 * 90.00076 * 19 17 15 21 21 H 1.48501 * 109.47328 * 210.00240 * 19 17 15 22 22 H 1.48497 * 109.47097 * 330.00347 * 19 17 15 23 23 H 1.09002 * 109.47002 * 299.99300 * 1 2 3 24 24 H 1.08993 * 109.47193 * 59.99548 * 1 2 3 25 25 H 1.08997 * 109.47066 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47524 * 64.99791 * 4 2 1 27 27 H 1.09007 * 109.46972 * 305.00164 * 4 2 1 28 28 H 1.07997 * 119.60531 * 180.31012 * 7 6 5 29 29 H 1.08002 * 120.41543 * 179.70479 * 8 7 6 30 30 H 1.08003 * 120.79071 * 180.30028 * 9 8 7 31 31 H 1.00897 * 110.99795 * 321.04364 * 12 2 1 32 32 H 1.08996 * 109.47049 * 299.99703 * 13 12 2 33 33 H 1.09001 * 109.47137 * 59.99771 * 13 12 2 34 34 H 1.08996 * 109.47506 * 299.99793 * 14 13 12 35 35 H 1.09001 * 109.47287 * 60.00233 * 14 13 12 36 36 H 0.96998 * 119.99706 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5419 -0.6150 1.3126 6 7 4.2859 -1.5411 0.7398 7 6 5.6030 -1.4860 0.7645 8 6 6.2561 -0.4517 1.4084 9 6 5.5086 0.5411 2.0224 10 6 4.1246 0.4530 1.9705 11 17 3.1375 1.6675 2.7218 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5961 -0.5328 -3.5742 15 6 2.6599 0.4060 -4.7515 16 1 2.3641 1.4382 -4.6357 17 6 3.0960 -0.0530 -5.9763 18 7 3.4557 -1.3102 -6.1174 19 14 3.1758 1.1106 -7.4353 20 1 4.5120 1.7570 -7.4805 21 1 2.9522 0.3478 -8.6897 22 1 2.1266 2.1522 -7.2957 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.7517 -1.7716 1.2055 27 1 1.6054 -0.2618 2.1370 28 1 6.1786 -2.2606 0.2797 29 1 7.3353 -0.4152 1.4290 30 1 5.9918 1.3637 2.5287 31 1 1.4495 -1.4979 -1.4101 32 1 1.0870 0.6164 -2.5525 33 1 2.7588 1.0463 -2.1182 34 1 3.5915 -0.9262 -3.3684 35 1 1.9200 -1.3566 -3.8031 36 1 3.7621 -1.6331 -6.9792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381339244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:03 Heat of formation + Delta-G solvation = 10.969296 kcal Electronic energy + Delta-G solvation = -17954.150701 eV Core-core repulsion = 15077.372845 eV Total energy + Delta-G solvation = -2876.777856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.22879 -37.08555 -36.62723 -33.69874 -32.54472 -31.93548 -30.61846 -27.88646 -26.95152 -24.00938 -23.47012 -22.38398 -20.62663 -20.27382 -17.04519 -16.66169 -16.24770 -15.86517 -14.76667 -14.59477 -14.51768 -14.27966 -13.86811 -13.36630 -13.06264 -12.53088 -12.41505 -12.28070 -12.07315 -11.98165 -11.80181 -11.33726 -11.07662 -10.94879 -10.89455 -10.68056 -10.50191 -9.96499 -9.71201 -9.32332 -9.30174 -9.09141 -8.74134 -8.31068 -7.63229 -5.95647 -3.97931 1.00104 1.23433 2.02794 3.33957 3.39879 3.43248 3.76048 4.36579 4.46103 4.60084 4.76231 4.88555 4.98846 5.17534 5.30958 5.37606 5.40062 5.54674 5.60045 5.71070 5.89888 5.91611 6.00744 6.04801 6.18107 6.33174 6.44873 6.52509 6.60767 7.05965 7.58817 7.80598 7.90861 8.06345 8.09657 8.17106 8.49492 9.09639 9.65437 11.15711 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.004666 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.071710 B = 5998.925618 C = 6499.779024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.073 0.927 4 C -0.067 4.067 5 C 0.172 3.828 6 N -0.438 5.438 7 C 0.111 3.889 8 C -0.175 4.175 9 C -0.069 4.069 10 C -0.097 4.097 11 Cl -0.064 7.064 12 N -0.676 5.676 13 C 0.069 3.931 14 C 0.028 3.972 15 C -0.520 4.520 16 H 0.053 0.947 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.160 0.840 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.337 0.663 32 H 0.013 0.987 33 H 0.052 0.948 34 H 0.024 0.976 35 H 0.013 0.987 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.054 2.206 19.445 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.022 4.022 3 H 0.092 0.908 4 C -0.105 4.105 5 C 0.033 3.967 6 N -0.146 5.146 7 C -0.047 4.047 8 C -0.195 4.195 9 C -0.096 4.096 10 C -0.126 4.126 11 Cl -0.036 7.036 12 N -0.306 5.306 13 C -0.059 4.059 14 C -0.009 4.009 15 C -0.559 4.559 16 H 0.071 0.929 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.200 1.200 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.178 0.822 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.293 1.571 19.111 19.219 hybrid contribution -0.357 1.623 -0.702 1.804 sum 0.935 3.194 18.409 18.707 Atomic orbital electron populations 1.22483 0.97220 1.02090 1.02051 1.21422 0.92187 0.97780 0.90770 0.90831 1.20728 0.88255 1.03032 0.98530 1.21049 0.97144 0.88322 0.90188 1.67747 1.06425 1.26207 1.14191 1.22951 0.90567 0.96849 0.94306 1.22114 1.01454 0.95621 1.00290 1.21426 0.91619 0.98841 0.97682 1.21918 0.92581 0.94330 1.03736 1.98349 1.70161 1.54406 1.80639 1.60639 1.56416 1.09770 1.03825 1.22130 0.97830 0.95166 0.90791 1.19030 0.96949 0.95171 0.89792 1.21194 1.43772 0.96350 0.94605 0.92921 1.24992 0.95472 0.95057 0.98791 1.69983 1.44562 1.14304 1.24374 0.86616 0.78359 0.80923 0.82219 1.20690 1.21218 1.19963 0.92562 0.92222 0.92373 0.89568 0.90040 0.82232 0.84308 0.84333 0.84473 0.96829 0.92992 0.95781 0.96864 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 9.16 37.16 0.34 -1.94 16 2 C 0.09 1.33 2.58 -67.71 -0.17 1.15 16 3 H 0.07 1.17 7.80 -51.93 -0.40 0.76 16 4 C -0.07 -0.88 4.79 -27.89 -0.13 -1.02 16 5 C 0.17 2.50 5.77 -82.55 -0.48 2.02 16 6 N -0.44 -6.88 10.27 -9.45 -0.10 -6.97 16 7 C 0.11 1.46 11.18 -17.54 -0.20 1.26 16 8 C -0.17 -1.93 10.11 -39.44 -0.40 -2.32 16 9 C -0.07 -0.79 9.98 -39.24 -0.39 -1.18 16 10 C -0.10 -1.26 6.34 -39.36 -0.25 -1.51 16 11 Cl -0.06 -0.74 27.33 -51.86 -1.42 -2.16 16 12 N -0.68 -12.36 5.96 -106.72 -0.64 -13.00 16 13 C 0.07 1.50 5.42 -3.82 -0.02 1.48 16 14 C 0.03 0.75 5.23 -27.88 -0.15 0.61 16 15 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 19 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.82 7.45 -51.93 -0.39 0.44 16 25 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.08 0.92 6.90 -51.92 -0.36 0.56 16 28 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 31 H 0.34 6.05 8.47 -39.29 -0.33 5.72 16 32 H 0.01 0.29 7.44 -51.93 -0.39 -0.10 16 33 H 0.05 1.17 8.06 -51.93 -0.42 0.75 16 34 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -31.82 319.87 -9.08 -40.90 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.21 Total: 1.28 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -2.26 Total: -15.27 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.00 Total: -46.59 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.42 Total: -2.16 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.82 -9.08 -40.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381339244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.873 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds