Wall clock time and date at job start Mon Mar 30 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47039 * 2 1 4 4 C 1.53000 * 109.47054 * 239.99738 * 2 1 3 5 5 C 1.50699 * 109.46873 * 175.00179 * 4 2 1 6 6 N 1.31879 * 119.62696 * 90.00404 * 5 4 2 7 7 C 1.31855 * 121.73725 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.79317 * 0.02562 * 7 6 5 9 9 C 1.38601 * 119.17636 * 0.23721 * 8 7 6 10 10 C 1.38306 * 119.62781 * 269.97755 * 5 4 2 11 11 Cl 1.73595 * 120.43052 * 0.04546 * 10 5 4 12 12 N 1.46907 * 109.47099 * 119.99840 * 2 1 3 13 13 C 1.46900 * 110.99841 * 275.00162 * 12 2 1 14 14 C 1.53002 * 109.46981 * 179.97438 * 13 12 2 15 15 C 1.50694 * 109.47141 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00145 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99961 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99902 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99767 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46990 * 60.00269 * 19 17 15 21 21 H 1.48503 * 109.46788 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47430 * 300.00139 * 19 17 15 23 23 H 1.08999 * 109.47526 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46918 * 300.00172 * 1 2 3 25 25 H 1.09005 * 109.46863 * 60.00047 * 1 2 3 26 26 H 1.09000 * 109.46788 * 55.00269 * 4 2 1 27 27 H 1.09000 * 109.47192 * 295.00254 * 4 2 1 28 28 H 1.07993 * 119.60114 * 180.02562 * 7 6 5 29 29 H 1.08002 * 120.40833 * 179.97438 * 8 7 6 30 30 H 1.07994 * 120.79849 * 179.74680 * 9 8 7 31 31 H 1.00903 * 110.99869 * 38.95182 * 12 2 1 32 32 H 1.08999 * 109.47136 * 299.99868 * 13 12 2 33 33 H 1.08999 * 109.47173 * 60.00053 * 13 12 2 34 34 H 1.08999 * 109.47124 * 299.99933 * 14 13 12 35 35 H 1.09002 * 109.46771 * 59.99641 * 14 13 12 36 36 H 0.97005 * 119.99635 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 7 4.2858 -1.5414 -0.7402 7 6 5.6030 -1.4898 -0.7707 8 6 6.2560 -0.4524 -1.4096 9 6 5.5086 0.5435 -2.0184 10 6 4.1246 0.4527 -1.9709 11 17 3.1375 1.6678 -2.7211 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 6 2.6600 0.4058 4.7515 16 1 2.3648 1.4382 4.6356 17 6 3.0953 -0.0534 5.9765 18 7 3.4543 -1.3107 6.1177 19 14 3.1751 1.1103 7.4356 20 1 1.8192 1.6475 7.7150 21 1 3.6727 0.3768 8.6271 22 1 4.0974 2.2317 7.1245 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6054 -0.2618 -2.1369 27 1 1.7516 -1.7716 -1.2055 28 1 6.1785 -2.2675 -0.2908 29 1 7.3352 -0.4162 -1.4304 30 1 5.9917 1.3681 -2.5213 31 1 1.4495 -1.4979 1.4101 32 1 2.7588 1.0462 2.1182 33 1 1.0870 0.6163 2.5525 34 1 1.9183 -1.3565 3.8031 35 1 3.5903 -0.9272 3.3691 36 1 3.7602 -1.6338 6.9797 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381339251.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:06 Heat of formation + Delta-G solvation = 11.019293 kcal Electronic energy + Delta-G solvation = -17953.694704 eV Core-core repulsion = 15076.919015 eV Total energy + Delta-G solvation = -2876.775688 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.22861 -37.08521 -36.62736 -33.69843 -32.54498 -31.93519 -30.61822 -27.88592 -26.95114 -24.00717 -23.47034 -22.38354 -20.62581 -20.27269 -17.04531 -16.66138 -16.24471 -15.86535 -14.76672 -14.59465 -14.51602 -14.28400 -13.86760 -13.36500 -13.06509 -12.52808 -12.41098 -12.27852 -12.07370 -11.98161 -11.80128 -11.33764 -11.07198 -10.94837 -10.89156 -10.68019 -10.51431 -9.96001 -9.71069 -9.32128 -9.30194 -9.10263 -8.74123 -8.30760 -7.63176 -5.95389 -3.97734 1.00024 1.23531 2.02858 3.35390 3.39542 3.42100 3.76165 4.36448 4.46176 4.60149 4.76238 4.88590 4.98855 5.17559 5.30924 5.37623 5.40214 5.54717 5.60094 5.71098 5.89867 5.91629 6.00740 6.04796 6.18108 6.33216 6.44995 6.52467 6.60767 7.06023 7.58791 7.80493 7.90960 8.06422 8.09700 8.17222 8.49635 9.09613 9.65521 11.15923 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.004666 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.390475 B = 5999.659622 C = 6500.036145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.073 0.927 4 C -0.067 4.067 5 C 0.172 3.828 6 N -0.438 5.438 7 C 0.111 3.889 8 C -0.175 4.175 9 C -0.069 4.069 10 C -0.097 4.097 11 Cl -0.064 7.064 12 N -0.676 5.676 13 C 0.069 3.931 14 C 0.028 3.972 15 C -0.521 4.521 16 H 0.052 0.948 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.160 0.840 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.337 0.663 32 H 0.052 0.948 33 H 0.013 0.987 34 H 0.013 0.987 35 H 0.024 0.976 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 2.191 -19.441 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.022 4.022 3 H 0.092 0.908 4 C -0.105 4.105 5 C 0.033 3.967 6 N -0.146 5.146 7 C -0.047 4.047 8 C -0.195 4.195 9 C -0.096 4.096 10 C -0.126 4.126 11 Cl -0.036 7.036 12 N -0.306 5.306 13 C -0.059 4.059 14 C -0.009 4.009 15 C -0.560 4.560 16 H 0.070 0.930 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.178 0.822 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.310 1.555 -19.102 19.210 hybrid contribution -0.373 1.634 0.701 1.817 sum 0.937 3.189 -18.401 18.699 Atomic orbital electron populations 1.22486 0.97221 1.02090 1.02049 1.21423 0.92187 0.97781 0.90773 0.90832 1.20728 0.88256 1.03031 0.98530 1.21048 0.97144 0.88361 0.90145 1.67745 1.06426 1.26222 1.14173 1.22952 0.90570 0.96882 0.94283 1.22111 1.01455 0.95552 1.00355 1.21424 0.91619 0.98852 0.97664 1.21921 0.92582 0.94313 1.03755 1.98348 1.70159 1.54355 1.80688 1.60642 1.56409 1.09769 1.03825 1.22130 0.97827 0.95169 0.90792 1.19022 0.96948 0.95154 0.89777 1.21155 1.43933 0.96306 0.94623 0.92974 1.24989 0.95448 0.95059 0.98776 1.69969 1.44495 1.14316 1.24432 0.86677 0.78359 0.80977 0.82080 1.20312 1.21261 1.20300 0.92372 0.92230 0.92555 0.90035 0.89568 0.82235 0.84309 0.84334 0.84474 0.92988 0.96840 0.96877 0.95786 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 9.16 37.16 0.34 -1.94 16 2 C 0.09 1.33 2.58 -67.71 -0.17 1.15 16 3 H 0.07 1.17 7.80 -51.93 -0.40 0.76 16 4 C -0.07 -0.88 4.79 -27.88 -0.13 -1.02 16 5 C 0.17 2.50 5.77 -82.55 -0.48 2.03 16 6 N -0.44 -6.88 10.27 -9.45 -0.10 -6.97 16 7 C 0.11 1.45 11.18 -17.54 -0.20 1.26 16 8 C -0.17 -1.92 10.11 -39.45 -0.40 -2.32 16 9 C -0.07 -0.79 9.98 -39.24 -0.39 -1.18 16 10 C -0.10 -1.26 6.34 -39.35 -0.25 -1.51 16 11 Cl -0.06 -0.74 27.33 -51.86 -1.42 -2.15 16 12 N -0.68 -12.37 5.96 -106.72 -0.64 -13.00 16 13 C 0.07 1.50 5.42 -3.82 -0.02 1.48 16 14 C 0.03 0.76 5.23 -27.88 -0.15 0.62 16 15 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 19 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 24 H 0.06 0.82 7.45 -51.93 -0.39 0.44 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.92 6.90 -51.93 -0.36 0.57 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 29 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.34 6.05 8.47 -39.29 -0.33 5.72 16 32 H 0.05 1.17 8.06 -51.93 -0.42 0.75 16 33 H 0.01 0.29 7.44 -51.93 -0.39 -0.10 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -31.80 319.87 -9.08 -40.89 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.21 Total: 1.31 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -2.26 Total: -15.28 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.00 Total: -46.60 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.42 Total: -2.15 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.80 -9.08 -40.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381339251.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.905 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds