Wall clock time and date at job start Mon Mar 30 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47039 * 2 1 4 4 C 1.53000 * 109.47054 * 239.99738 * 2 1 3 5 5 C 1.50699 * 109.46873 * 175.00179 * 4 2 1 6 6 N 1.31879 * 119.62696 * 90.00404 * 5 4 2 7 7 C 1.31855 * 121.73725 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.79317 * 0.02562 * 7 6 5 9 9 C 1.38601 * 119.17636 * 0.23721 * 8 7 6 10 10 C 1.38306 * 119.62781 * 269.97755 * 5 4 2 11 11 Cl 1.73595 * 120.43052 * 0.04546 * 10 5 4 12 12 N 1.46907 * 109.47099 * 119.99840 * 2 1 3 13 13 C 1.46900 * 110.99841 * 275.00162 * 12 2 1 14 14 C 1.53002 * 109.46981 * 179.97438 * 13 12 2 15 15 C 1.50694 * 109.47141 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00145 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99961 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99902 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99767 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46990 * 60.00269 * 19 17 15 21 21 H 1.48503 * 109.46788 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47430 * 300.00139 * 19 17 15 23 23 H 1.08999 * 109.47526 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46918 * 300.00172 * 1 2 3 25 25 H 1.09005 * 109.46863 * 60.00047 * 1 2 3 26 26 H 1.09000 * 109.46788 * 55.00269 * 4 2 1 27 27 H 1.09000 * 109.47192 * 295.00254 * 4 2 1 28 28 H 1.07993 * 119.60114 * 180.02562 * 7 6 5 29 29 H 1.08002 * 120.40833 * 179.97438 * 8 7 6 30 30 H 1.07994 * 120.79849 * 179.74680 * 9 8 7 31 31 H 1.00903 * 110.99869 * 38.95182 * 12 2 1 32 32 H 1.08999 * 109.47136 * 299.99868 * 13 12 2 33 33 H 1.08999 * 109.47173 * 60.00053 * 13 12 2 34 34 H 1.08999 * 109.47124 * 299.99933 * 14 13 12 35 35 H 1.09002 * 109.46771 * 59.99641 * 14 13 12 36 36 H 0.97005 * 119.99635 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 7 4.2858 -1.5414 -0.7402 7 6 5.6030 -1.4898 -0.7707 8 6 6.2560 -0.4524 -1.4096 9 6 5.5086 0.5435 -2.0184 10 6 4.1246 0.4527 -1.9709 11 17 3.1375 1.6678 -2.7211 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 6 2.6600 0.4058 4.7515 16 1 2.3648 1.4382 4.6356 17 6 3.0953 -0.0534 5.9765 18 7 3.4543 -1.3107 6.1177 19 14 3.1751 1.1103 7.4356 20 1 1.8192 1.6475 7.7150 21 1 3.6727 0.3768 8.6271 22 1 4.0974 2.2317 7.1245 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6054 -0.2618 -2.1369 27 1 1.7516 -1.7716 -1.2055 28 1 6.1785 -2.2675 -0.2908 29 1 7.3352 -0.4162 -1.4304 30 1 5.9917 1.3681 -2.5213 31 1 1.4495 -1.4979 1.4101 32 1 2.7588 1.0462 2.1182 33 1 1.0870 0.6163 2.5525 34 1 1.9183 -1.3565 3.8031 35 1 3.5903 -0.9272 3.3691 36 1 3.7602 -1.6338 6.9797 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381339251.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:06 Heat of formation + Delta-G solvation = -9.148338 kcal Electronic energy + Delta-G solvation = -17954.569238 eV Core-core repulsion = 15076.919015 eV Total energy + Delta-G solvation = -2877.650222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.20674 -38.44070 -37.56896 -35.57930 -33.98072 -33.12129 -31.98978 -29.64845 -27.95435 -25.98692 -24.45280 -23.45623 -22.45373 -21.58439 -18.52222 -17.97223 -17.62375 -16.88254 -16.54522 -16.13275 -15.85011 -15.61100 -15.10014 -14.47399 -14.32550 -14.10873 -13.90031 -13.52940 -13.18928 -13.05675 -12.99279 -12.92796 -12.82772 -12.57407 -12.33484 -11.99774 -11.90075 -11.83405 -11.40494 -11.20889 -10.65192 -10.56424 -10.31041 -9.72986 -9.11026 -8.20055 -6.32059 0.03057 0.30530 1.08066 1.38892 1.42407 1.50438 2.39996 2.77539 3.12784 3.35939 3.40374 3.76859 3.92208 4.05535 4.10268 4.24546 4.39367 4.47323 4.51335 4.60551 4.68418 4.74348 4.88495 4.92365 5.03127 5.07808 5.10126 5.19345 5.28673 5.44732 5.66402 5.69441 5.79923 6.17024 6.34229 6.63072 6.85165 7.10352 7.37053 8.91846 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.004666 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.390475 B = 5999.659622 C = 6500.036145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 H 0.063 0.937 4 C -0.060 4.060 5 C 0.147 3.853 6 N -0.476 5.476 7 C 0.088 3.912 8 C -0.165 4.165 9 C -0.072 4.072 10 C -0.106 4.106 11 Cl -0.053 7.053 12 N -0.682 5.682 13 C 0.092 3.908 14 C 0.038 3.962 15 C -0.547 4.547 16 H 0.057 0.943 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.268 1.268 23 H 0.066 0.934 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.167 0.833 31 H 0.338 0.662 32 H 0.043 0.957 33 H 0.018 0.982 34 H -0.010 1.010 35 H -0.012 1.012 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.181 3.745 -20.124 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 H 0.082 0.918 4 C -0.098 4.098 5 C 0.008 3.992 6 N -0.185 5.185 7 C -0.069 4.069 8 C -0.184 4.184 9 C -0.098 4.098 10 C -0.135 4.135 11 Cl -0.024 7.024 12 N -0.312 5.312 13 C -0.037 4.037 14 C 0.001 3.999 15 C -0.585 4.585 16 H 0.076 0.924 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.193 1.193 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.189 0.811 29 H 0.191 0.809 30 H 0.184 0.816 31 H 0.156 0.844 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.008 0.992 35 H 0.007 0.993 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.416 3.115 -19.812 20.106 hybrid contribution -0.361 1.121 0.846 1.450 sum 1.055 4.237 -18.966 19.462 Atomic orbital electron populations 1.22407 0.95280 1.02868 1.02621 1.21460 0.93709 0.96981 0.89692 0.91834 1.20685 0.88077 1.02819 0.98240 1.21222 0.97587 0.89141 0.91212 1.67675 1.07848 1.27508 1.15421 1.23334 0.90216 0.98283 0.95109 1.22459 1.03126 0.94242 0.98589 1.21835 0.91142 0.99577 0.97292 1.22049 0.93533 0.94225 1.03658 1.98345 1.70017 1.53694 1.80388 1.60539 1.57516 1.09475 1.03692 1.21682 0.97347 0.94574 0.90126 1.18839 0.94541 0.94652 0.91869 1.21576 1.44323 0.96881 0.95739 0.92435 1.25966 0.94654 0.96843 1.02087 1.70111 1.45078 1.16399 1.25432 0.85492 0.78965 0.78648 0.77875 1.19075 1.20604 1.19278 0.91532 0.93497 0.90071 0.87967 0.89814 0.81062 0.80931 0.81595 0.84381 0.93845 0.96379 0.99156 0.99336 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 9.16 71.98 0.66 -3.47 16 2 C 0.09 2.67 2.58 44.91 0.12 2.79 16 3 H 0.06 1.98 7.80 -2.39 -0.02 1.96 16 4 C -0.06 -1.54 4.79 29.85 0.14 -1.39 16 5 C 0.15 4.23 5.77 42.57 0.25 4.47 16 6 N -0.48 -15.13 10.27 -183.80 -1.89 -17.02 16 7 C 0.09 2.28 11.18 84.69 0.95 3.23 16 8 C -0.16 -3.34 10.11 22.36 0.23 -3.11 16 9 C -0.07 -1.50 9.98 22.49 0.22 -1.28 16 10 C -0.11 -2.62 6.34 22.42 0.14 -2.48 16 11 Cl -0.05 -1.13 27.33 -2.72 -0.07 -1.21 16 12 N -0.68 -25.35 5.96 -491.56 -2.93 -28.28 16 13 C 0.09 4.07 5.42 86.30 0.47 4.54 16 14 C 0.04 2.14 5.23 29.85 0.16 2.30 16 15 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 17 C 0.00 0.15 5.46 84.66 0.46 0.62 16 18 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 19 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 24 H 0.05 1.24 7.45 -2.39 -0.02 1.22 16 25 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.10 2.15 6.90 -2.39 -0.02 2.13 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 30 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.34 12.41 8.47 -89.69 -0.76 11.65 16 32 H 0.04 1.98 8.06 -2.39 -0.02 1.96 16 33 H 0.02 0.78 7.44 -2.39 -0.02 0.76 16 34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 36 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -69.47 319.87 1.75 -67.72 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.31 Total: 15.21 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: 4.02 Total: -25.80 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -4.54 Total: -103.01 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.07 Total: -1.21 kcal Total: -69.47 1.75 -67.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381339251.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.568 kcal (2) G-P(sol) polarization free energy of solvation -69.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds