Wall clock time and date at job start Mon Mar 30 2020 06:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47321 * 2 1 4 4 C 1.53004 * 109.46950 * 120.00285 * 2 1 3 5 5 C 1.52991 * 109.47205 * 65.73777 * 4 2 1 6 6 H 1.08993 * 109.47342 * 302.71779 * 5 4 2 7 7 C 1.50707 * 109.47006 * 182.71271 * 5 4 2 8 8 H 1.07998 * 120.00221 * 275.06438 * 7 5 4 9 9 C 1.37878 * 119.99576 * 95.06685 * 7 5 4 10 10 N 1.31516 * 119.99573 * 178.42369 * 9 7 5 11 11 Si 1.86794 * 120.00083 * 358.42971 * 9 7 5 12 12 H 1.48494 * 109.47700 * 84.66960 * 11 9 7 13 13 H 1.48507 * 109.47100 * 204.67162 * 11 9 7 14 14 H 1.48506 * 109.47214 * 324.66742 * 11 9 7 15 15 N 1.46501 * 109.47270 * 62.71719 * 5 4 2 16 16 C 1.39776 * 120.00188 * 203.59625 * 15 5 4 17 17 C 1.39332 * 120.47896 * 179.97438 * 16 15 5 18 18 C 1.38452 * 118.37435 * 179.97438 * 17 16 15 19 19 C 1.38422 * 119.23170 * 0.02562 * 18 17 16 20 20 Cl 1.73598 * 119.55486 * 179.97438 * 19 18 17 21 21 N 1.31928 * 120.89031 * 0.26858 * 19 18 17 22 22 C 1.31863 * 121.78556 * 359.44181 * 21 19 18 23 23 H 1.08994 * 109.47441 * 300.00179 * 1 2 3 24 24 H 1.09003 * 109.46986 * 60.00214 * 1 2 3 25 25 H 1.09003 * 109.47593 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47057 * 239.99625 * 2 1 3 27 27 H 1.08999 * 109.47200 * 183.73614 * 3 2 1 28 28 H 1.09003 * 109.47480 * 303.74319 * 3 2 1 29 29 H 1.08999 * 109.47053 * 63.73833 * 3 2 1 30 30 H 1.09001 * 109.47045 * 305.73504 * 4 2 1 31 31 H 1.09004 * 109.46562 * 185.74336 * 4 2 1 32 32 H 0.97000 * 119.99853 * 179.97438 * 10 9 7 33 33 H 0.97008 * 120.00070 * 23.59164 * 15 5 4 34 34 H 1.08004 * 120.81149 * 359.95192 * 17 16 15 35 35 H 1.08007 * 120.38345 * 180.02562 * 18 17 16 36 36 H 1.07992 * 119.66333 * 180.26839 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6511 -2.1994 1.1792 6 1 0.5694 -2.2861 1.0777 7 6 2.0949 -2.8959 2.4398 8 1 3.1042 -3.2711 2.5227 9 6 1.2123 -3.0541 3.4872 10 7 1.5901 -3.6891 4.5751 11 14 -0.5199 -2.3666 3.3608 12 1 -1.3901 -3.3430 2.6577 13 1 -1.0548 -2.1187 4.7239 14 1 -0.4921 -1.0912 2.6006 15 7 2.3014 -2.8211 0.0230 16 6 1.7567 -3.9744 -0.5488 17 6 2.3666 -4.5737 -1.6489 18 6 1.7902 -5.7149 -2.1802 19 6 0.6359 -6.2191 -1.6063 20 17 -0.0943 -7.6492 -2.2661 21 7 0.0799 -5.6242 -0.5683 22 6 0.5998 -4.5391 -0.0289 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1279 1.4431 -0.0670 28 1 1.6230 1.9754 -0.8545 29 1 1.7324 1.9366 0.9216 30 1 1.5951 -0.2702 2.1363 31 1 3.1251 -0.6331 1.3021 32 1 0.9693 -3.8001 5.3121 33 1 3.1101 -2.4324 -0.3458 34 1 3.2669 -4.1579 -2.0769 35 1 2.2361 -6.2060 -3.0325 36 1 0.1184 -4.0825 0.8231 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381448396.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:40 Heat of formation + Delta-G solvation = 10.280044 kcal Electronic energy + Delta-G solvation = -18539.572292 eV Core-core repulsion = 15662.764548 eV Total energy + Delta-G solvation = -2876.807744 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.76162 -37.38955 -36.10467 -34.48569 -32.77811 -31.75864 -30.00560 -27.54457 -26.90225 -25.37389 -23.43662 -22.33800 -20.80315 -19.32012 -17.50166 -16.89643 -16.57650 -15.86097 -14.73396 -14.56498 -14.18222 -13.92735 -13.87445 -13.60921 -12.90748 -12.83159 -12.42656 -12.21589 -11.99819 -11.82642 -11.48701 -11.28653 -11.11054 -10.95659 -10.88394 -10.56402 -10.35844 -10.16291 -10.03196 -9.77823 -9.45135 -9.10055 -8.92136 -8.73571 -6.81977 -6.26625 -4.29867 1.60246 1.80247 2.38135 3.15804 3.22621 3.27366 4.05745 4.22763 4.27606 4.99461 5.06994 5.24931 5.29448 5.30396 5.35417 5.41106 5.55696 5.84597 5.91046 6.00506 6.04739 6.08213 6.23822 6.25877 6.27854 6.37015 6.41064 6.49054 6.63552 6.81909 6.91314 6.96783 7.42820 7.79043 8.21227 8.34010 8.45442 8.80007 9.33196 10.85941 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.006765 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.705913 B = 4138.008569 C = 5033.878225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.145 4.145 4 C -0.115 4.115 5 C 0.238 3.762 6 H 0.043 0.957 7 C -0.533 4.533 8 H 0.077 0.923 9 C 0.081 3.919 10 N -0.885 5.885 11 Si 0.853 3.147 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.254 1.254 15 N -0.707 5.707 16 C 0.204 3.796 17 C -0.172 4.172 18 C -0.102 4.102 19 C 0.087 3.913 20 Cl -0.065 7.065 21 N -0.440 5.440 22 C 0.055 3.945 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.268 0.732 33 H 0.389 0.611 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 3.683 -12.233 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.202 4.202 4 C -0.154 4.154 5 C 0.135 3.865 6 H 0.061 0.939 7 C -0.571 4.571 8 H 0.095 0.905 9 C -0.124 4.124 10 N -0.521 5.521 11 Si 0.679 3.321 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.178 1.178 15 N -0.330 5.330 16 C 0.092 3.908 17 C -0.203 4.203 18 C -0.124 4.124 19 C -0.078 4.078 20 Cl -0.037 7.037 21 N -0.149 5.149 22 C -0.111 4.111 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.223 0.777 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.863 3.270 -11.542 12.027 hybrid contribution 0.120 0.570 -0.277 0.645 sum -0.743 3.840 -11.819 12.449 Atomic orbital electron populations 1.21898 0.95982 1.01761 1.00785 1.21247 0.95616 0.95578 0.99677 1.21841 1.00537 0.96717 1.01102 1.22118 1.00753 0.96146 0.96336 1.19238 0.93308 0.89523 0.84399 0.93898 1.21284 1.00647 1.38028 0.97159 0.90495 1.24976 0.98122 0.93980 0.95280 1.69871 1.36259 1.40086 1.05912 0.87260 0.85491 0.81032 0.78322 1.19230 1.21005 1.17822 1.45468 1.29050 1.25350 1.33096 1.18922 0.92743 0.88114 0.91060 1.20889 1.02483 0.98195 0.98697 1.21352 0.94619 0.96093 1.00312 1.21011 0.95257 0.93780 0.97765 1.98325 1.84145 1.37473 1.83772 1.66741 1.32033 1.08107 1.08064 1.22308 0.94803 0.93023 1.00927 0.92877 0.93617 0.92606 0.91650 0.93043 0.93515 0.92931 0.91104 0.92194 0.92230 0.77743 0.84849 0.84910 0.82036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.80 37.16 0.33 -1.88 16 2 C -0.10 -1.50 2.85 -90.62 -0.26 -1.76 16 3 C -0.14 -1.80 9.19 37.16 0.34 -1.46 16 4 C -0.11 -2.02 4.12 -26.73 -0.11 -2.13 16 5 C 0.24 4.78 1.12 -69.08 -0.08 4.70 16 6 H 0.04 0.90 2.42 -51.93 -0.13 0.78 16 7 C -0.53 -13.43 8.94 -34.44 -0.31 -13.74 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 9 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 10 N -0.89 -25.63 13.96 55.43 0.77 -24.85 16 11 Si 0.85 19.54 25.79 -169.99 -4.38 15.15 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.25 -5.30 6.30 56.52 0.36 -4.94 16 15 N -0.71 -12.45 4.55 -53.17 -0.24 -12.69 16 16 C 0.20 3.71 6.64 -83.61 -0.56 3.16 16 17 C -0.17 -2.62 10.04 -39.10 -0.39 -3.01 16 18 C -0.10 -1.55 9.87 -39.43 -0.39 -1.94 16 19 C 0.09 1.55 7.27 -17.44 -0.13 1.42 16 20 Cl -0.07 -1.01 29.10 -51.86 -1.51 -2.52 16 21 N -0.44 -9.00 10.33 -10.20 -0.11 -9.11 16 22 C 0.05 1.13 10.30 -17.32 -0.18 0.95 16 23 H 0.05 0.81 7.95 -51.93 -0.41 0.39 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.91 6.53 -51.93 -0.34 0.58 16 26 H 0.07 0.92 7.44 -51.93 -0.39 0.53 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.34 7.44 -51.93 -0.39 0.96 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.39 5.85 8.51 -40.82 -0.35 5.50 16 34 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 35 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 36 H 0.16 3.62 5.47 -52.49 -0.29 3.33 16 LS Contribution 307.82 15.07 4.64 4.64 Total: -1.00 -27.97 307.82 -7.50 -35.47 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -4.85 Total: 7.53 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -1.82 Total: -13.62 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.43 Total: -46.65 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.38 Total: 15.15 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.51 Total: -2.52 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.97 -7.50 -35.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381448396.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.746 kcal (2) G-P(sol) polarization free energy of solvation -27.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds