Wall clock time and date at job start Mon Mar 30 2020 06:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47321 * 2 1 4 4 C 1.53004 * 109.46950 * 120.00285 * 2 1 3 5 5 C 1.52991 * 109.47205 * 65.73777 * 4 2 1 6 6 H 1.08993 * 109.47342 * 302.71779 * 5 4 2 7 7 C 1.50707 * 109.47006 * 182.71271 * 5 4 2 8 8 H 1.07998 * 120.00221 * 275.06438 * 7 5 4 9 9 C 1.37878 * 119.99576 * 95.06685 * 7 5 4 10 10 N 1.31516 * 119.99573 * 178.42369 * 9 7 5 11 11 Si 1.86794 * 120.00083 * 358.42971 * 9 7 5 12 12 H 1.48494 * 109.47700 * 84.66960 * 11 9 7 13 13 H 1.48507 * 109.47100 * 204.67162 * 11 9 7 14 14 H 1.48506 * 109.47214 * 324.66742 * 11 9 7 15 15 N 1.46501 * 109.47270 * 62.71719 * 5 4 2 16 16 C 1.39776 * 120.00188 * 203.59625 * 15 5 4 17 17 C 1.39332 * 120.47896 * 179.97438 * 16 15 5 18 18 C 1.38452 * 118.37435 * 179.97438 * 17 16 15 19 19 C 1.38422 * 119.23170 * 0.02562 * 18 17 16 20 20 Cl 1.73598 * 119.55486 * 179.97438 * 19 18 17 21 21 N 1.31928 * 120.89031 * 0.26858 * 19 18 17 22 22 C 1.31863 * 121.78556 * 359.44181 * 21 19 18 23 23 H 1.08994 * 109.47441 * 300.00179 * 1 2 3 24 24 H 1.09003 * 109.46986 * 60.00214 * 1 2 3 25 25 H 1.09003 * 109.47593 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47057 * 239.99625 * 2 1 3 27 27 H 1.08999 * 109.47200 * 183.73614 * 3 2 1 28 28 H 1.09003 * 109.47480 * 303.74319 * 3 2 1 29 29 H 1.08999 * 109.47053 * 63.73833 * 3 2 1 30 30 H 1.09001 * 109.47045 * 305.73504 * 4 2 1 31 31 H 1.09004 * 109.46562 * 185.74336 * 4 2 1 32 32 H 0.97000 * 119.99853 * 179.97438 * 10 9 7 33 33 H 0.97008 * 120.00070 * 23.59164 * 15 5 4 34 34 H 1.08004 * 120.81149 * 359.95192 * 17 16 15 35 35 H 1.08007 * 120.38345 * 180.02562 * 18 17 16 36 36 H 1.07992 * 119.66333 * 180.26839 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6511 -2.1994 1.1792 6 1 0.5694 -2.2861 1.0777 7 6 2.0949 -2.8959 2.4398 8 1 3.1042 -3.2711 2.5227 9 6 1.2123 -3.0541 3.4872 10 7 1.5901 -3.6891 4.5751 11 14 -0.5199 -2.3666 3.3608 12 1 -1.3901 -3.3430 2.6577 13 1 -1.0548 -2.1187 4.7239 14 1 -0.4921 -1.0912 2.6006 15 7 2.3014 -2.8211 0.0230 16 6 1.7567 -3.9744 -0.5488 17 6 2.3666 -4.5737 -1.6489 18 6 1.7902 -5.7149 -2.1802 19 6 0.6359 -6.2191 -1.6063 20 17 -0.0943 -7.6492 -2.2661 21 7 0.0799 -5.6242 -0.5683 22 6 0.5998 -4.5391 -0.0289 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1279 1.4431 -0.0670 28 1 1.6230 1.9754 -0.8545 29 1 1.7324 1.9366 0.9216 30 1 1.5951 -0.2702 2.1363 31 1 3.1251 -0.6331 1.3021 32 1 0.9693 -3.8001 5.3121 33 1 3.1101 -2.4324 -0.3458 34 1 3.2669 -4.1579 -2.0769 35 1 2.2361 -6.2060 -3.0325 36 1 0.1184 -4.0825 0.8231 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381448396.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:40 Heat of formation + Delta-G solvation = -7.086564 kcal Electronic energy + Delta-G solvation = -18540.325365 eV Core-core repulsion = 15662.764548 eV Total energy + Delta-G solvation = -2877.560817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.15767 -38.80167 -37.39077 -35.80229 -34.66717 -33.18778 -31.49989 -29.04633 -27.99784 -27.01189 -24.88405 -23.73596 -22.32728 -20.59537 -19.29153 -18.43282 -17.96463 -17.35566 -16.46897 -15.80931 -15.69294 -15.32037 -15.20921 -14.93567 -14.59794 -14.09611 -13.83284 -13.60121 -13.43864 -13.11501 -12.92492 -12.66316 -12.63384 -12.40360 -12.15587 -12.06348 -11.82310 -11.65458 -11.46918 -11.31160 -10.94641 -10.74443 -10.49083 -10.36395 -8.35181 -8.26454 -6.38633 0.25767 0.43884 1.05727 1.29560 1.33663 1.39570 2.27736 2.61039 2.87192 3.09322 3.71524 4.00550 4.07272 4.07653 4.13767 4.18650 4.25717 4.55376 4.72100 4.76774 4.84702 4.89005 4.93869 5.02840 5.08369 5.14916 5.17774 5.18877 5.40509 5.50606 5.53311 5.58534 5.64109 6.09200 6.44458 6.69837 6.86763 7.09762 7.28630 8.82479 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.006765 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.705913 B = 4138.008569 C = 5033.878225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.141 4.141 4 C -0.110 4.110 5 C 0.246 3.754 6 H 0.038 0.962 7 C -0.521 4.521 8 H 0.034 0.966 9 C 0.026 3.974 10 N -0.942 5.942 11 Si 0.907 3.093 12 H -0.273 1.273 13 H -0.290 1.290 14 H -0.221 1.221 15 N -0.703 5.703 16 C 0.192 3.808 17 C -0.151 4.151 18 C -0.091 4.091 19 C 0.075 3.925 20 Cl -0.050 7.050 21 N -0.472 5.472 22 C 0.019 3.981 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.176 0.824 35 H 0.175 0.825 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 4.886 -15.564 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.114 4.114 3 C -0.198 4.198 4 C -0.149 4.149 5 C 0.142 3.858 6 H 0.056 0.944 7 C -0.560 4.560 8 H 0.052 0.948 9 C -0.173 4.173 10 N -0.581 5.581 11 Si 0.731 3.269 12 H -0.199 1.199 13 H -0.216 1.216 14 H -0.144 1.144 15 N -0.328 5.328 16 C 0.081 3.919 17 C -0.181 4.181 18 C -0.112 4.112 19 C -0.092 4.092 20 Cl -0.022 7.022 21 N -0.182 5.182 22 C -0.145 4.145 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.241 0.759 34 H 0.194 0.806 35 H 0.192 0.808 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.312 4.502 -14.906 15.575 hybrid contribution 0.030 0.039 0.626 0.628 sum -0.282 4.541 -14.281 14.988 Atomic orbital electron populations 1.21930 0.96255 1.00785 1.01776 1.21173 0.95330 0.96836 0.98030 1.21799 1.01227 0.94966 1.01811 1.21967 1.01044 0.94219 0.97622 1.18982 0.93189 0.90712 0.82898 0.94396 1.21574 0.98428 1.36823 0.99185 0.94763 1.25715 1.01994 0.94612 0.95014 1.70028 1.37729 1.43204 1.07172 0.86391 0.80756 0.81652 0.78112 1.19898 1.21606 1.14373 1.45062 1.29700 1.25536 1.32480 1.19023 0.92425 0.88315 0.92182 1.21363 1.02833 0.97227 0.96669 1.21813 0.93152 0.95544 1.00650 1.21488 0.96149 0.94206 0.97321 1.98328 1.84110 1.36444 1.83271 1.66612 1.33399 1.08631 1.09575 1.21966 0.96612 0.94350 1.01527 0.93356 0.91232 0.94531 0.90554 0.92083 0.91641 0.93268 0.92665 0.91759 0.92616 0.75901 0.80626 0.80757 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 8.80 71.98 0.63 -3.50 16 2 C -0.10 -2.51 2.85 -10.80 -0.03 -2.54 16 3 C -0.14 -3.01 9.19 71.98 0.66 -2.35 16 4 C -0.11 -3.73 4.12 30.59 0.13 -3.60 16 5 C 0.25 9.88 1.12 44.24 0.05 9.93 16 6 H 0.04 1.61 2.42 -2.39 -0.01 1.60 16 7 C -0.52 -27.25 8.94 25.60 0.23 -27.02 16 8 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 9 C 0.03 1.42 5.47 84.65 0.46 1.89 16 10 N -0.94 -57.50 13.96 21.45 0.30 -57.20 16 11 Si 0.91 41.82 25.79 68.60 1.77 43.59 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 13 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 14 H -0.22 -8.89 6.30 99.48 0.63 -8.27 16 15 N -0.70 -23.86 4.55 -322.14 -1.46 -25.33 16 16 C 0.19 6.73 6.64 38.28 0.25 6.99 16 17 C -0.15 -4.03 10.04 22.58 0.23 -3.80 16 18 C -0.09 -2.40 9.87 22.36 0.22 -2.18 16 19 C 0.08 2.53 7.27 84.72 0.62 3.14 16 20 Cl -0.05 -1.44 29.10 -2.72 -0.08 -1.52 16 21 N -0.47 -19.36 10.33 -186.18 -1.92 -21.28 16 22 C 0.02 0.79 10.30 84.83 0.87 1.66 16 23 H 0.05 1.36 7.95 -2.39 -0.02 1.34 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.04 1.14 6.53 -2.39 -0.02 1.12 16 26 H 0.08 1.87 7.44 -2.39 -0.02 1.86 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 2.04 7.44 -2.39 -0.02 2.02 16 31 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.26 15.37 8.31 -92.71 -0.77 14.59 16 33 H 0.40 11.15 8.51 -92.70 -0.79 10.36 16 34 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.18 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.13 6.17 5.47 -2.91 -0.02 6.16 16 Total: -1.00 -64.97 307.82 3.15 -61.82 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.22 Total: 21.30 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.32 Total: -21.38 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -3.09 Total: -103.81 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.77 Total: 43.59 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -64.97 3.15 -61.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381448396.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.735 kcal (2) G-P(sol) polarization free energy of solvation -64.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds