Wall clock time and date at job start Mon Mar 30 2020 06:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46890 * 2 1 4 4 C 1.52998 * 109.46818 * 119.99911 * 2 1 3 5 5 C 1.53000 * 109.47399 * 66.00763 * 4 2 1 6 6 H 1.09001 * 109.47282 * 172.93034 * 5 4 2 7 7 C 1.50703 * 109.46840 * 292.92319 * 5 4 2 8 8 H 1.08007 * 119.99515 * 120.00124 * 7 5 4 9 9 C 1.37868 * 120.00423 * 300.00142 * 7 5 4 10 10 N 1.31519 * 120.00397 * 359.97438 * 9 7 5 11 11 Si 1.86807 * 120.00192 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47097 * 59.99809 * 11 9 7 13 13 H 1.48497 * 109.47366 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.46998 * 299.99984 * 11 9 7 15 15 N 1.46491 * 109.47203 * 52.92465 * 5 4 2 16 16 C 1.39778 * 119.99792 * 83.65042 * 15 5 4 17 17 C 1.39336 * 120.47456 * 173.48351 * 16 15 5 18 18 C 1.38463 * 118.36896 * 179.73766 * 17 16 15 19 19 C 1.38423 * 119.22851 * 0.55946 * 18 17 16 20 20 Cl 1.73605 * 119.54913 * 179.67909 * 19 18 17 21 21 N 1.31925 * 120.89681 * 359.70016 * 19 18 17 22 22 C 1.31858 * 121.77908 * 0.02562 * 21 19 18 23 23 H 1.08998 * 109.47552 * 287.96308 * 1 2 3 24 24 H 1.09005 * 109.46844 * 47.96191 * 1 2 3 25 25 H 1.08999 * 109.47306 * 167.95797 * 1 2 3 26 26 H 1.08995 * 109.47127 * 239.99365 * 2 1 3 27 27 H 1.09008 * 109.46788 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.46811 * 299.99206 * 3 2 1 29 29 H 1.08988 * 109.47378 * 59.99785 * 3 2 1 30 30 H 1.09005 * 109.47137 * 306.00570 * 4 2 1 31 31 H 1.08997 * 109.47109 * 186.01213 * 4 2 1 32 32 H 0.96994 * 120.00109 * 180.02562 * 10 9 7 33 33 H 0.96994 * 120.00360 * 263.65658 * 15 5 4 34 34 H 1.07995 * 120.81494 * 359.97438 * 17 16 15 35 35 H 1.07994 * 120.38258 * 180.25919 * 18 17 16 36 36 H 1.08005 * 119.65799 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6569 -2.2007 1.1761 6 1 2.1257 -2.7386 2.0002 7 6 0.1593 -2.3373 1.2746 8 1 -0.3951 -2.7961 0.4692 9 6 -0.5029 -1.8767 2.3926 10 7 0.1722 -1.3185 3.3736 11 14 -2.3594 -2.0454 2.5143 12 1 -2.7317 -3.4812 2.4430 13 1 -2.8245 -1.4775 3.8052 14 1 -2.9976 -1.3122 1.3918 15 7 2.1158 -2.7616 -0.0970 16 6 3.4341 -3.2067 -0.2299 17 6 3.8447 -3.8641 -1.3877 18 6 5.1620 -4.2815 -1.4753 19 6 6.0182 -4.0445 -0.4138 20 17 7.6694 -4.5717 -0.5113 21 7 5.5963 -3.4238 0.6712 22 6 4.3517 -3.0056 0.7924 23 1 -0.3634 0.3169 0.9775 24 1 -0.3633 0.6882 -0.7633 25 1 -0.3634 -1.0050 -0.2144 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.5914 -0.2732 2.1360 31 1 3.1246 -0.6290 1.3048 32 1 -0.2937 -0.9947 4.1603 33 1 1.5049 -2.8240 -0.8478 34 1 3.1534 -4.0404 -2.1985 35 1 5.5161 -4.7904 -2.3596 36 1 4.0429 -2.5014 1.6963 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381448407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:43 Heat of formation + Delta-G solvation = 3.578305 kcal Electronic energy + Delta-G solvation = -18587.548342 eV Core-core repulsion = 15710.449988 eV Total energy + Delta-G solvation = -2877.098354 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.16454 -38.84179 -37.37452 -35.54880 -34.42375 -33.15775 -30.97902 -28.77694 -28.11541 -26.80668 -24.77431 -23.81473 -22.38442 -20.45151 -18.99000 -18.22952 -17.44052 -17.30213 -16.50701 -15.83997 -15.52680 -15.29540 -15.19123 -14.62345 -14.27082 -14.06690 -13.74507 -13.35966 -13.24996 -13.07956 -12.72032 -12.66456 -12.48114 -12.22531 -12.14227 -11.98012 -11.71263 -11.45149 -11.17529 -11.15384 -10.86104 -10.53079 -10.43687 -10.18951 -8.26428 -8.07057 -6.13263 0.25867 0.43951 1.07295 1.45483 1.48553 1.52281 2.40457 2.81813 2.86220 3.23208 3.72323 4.01114 4.10448 4.25012 4.29174 4.36154 4.44143 4.73395 4.90271 4.95299 4.99433 5.04849 5.14677 5.18446 5.25410 5.30377 5.40230 5.49383 5.61881 5.70025 5.77301 5.93141 5.99026 6.23707 6.48444 6.78850 6.91274 7.17149 7.48298 8.95859 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.026260 B = 0.005011 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.986282 B = 5586.281425 C = 5973.416315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.140 4.140 4 C -0.116 4.116 5 C 0.280 3.720 6 H 0.005 0.995 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.034 3.966 10 N -0.910 5.910 11 Si 0.938 3.062 12 H -0.277 1.277 13 H -0.294 1.294 14 H -0.265 1.265 15 N -0.704 5.704 16 C 0.185 3.815 17 C -0.153 4.153 18 C -0.090 4.090 19 C 0.075 3.925 20 Cl -0.049 7.049 21 N -0.465 5.465 22 C 0.016 3.984 23 H 0.026 0.974 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.016 0.984 32 H 0.261 0.739 33 H 0.403 0.597 34 H 0.170 0.830 35 H 0.172 0.828 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.070 -2.145 -10.849 12.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 C -0.197 4.197 4 C -0.155 4.155 5 C 0.176 3.824 6 H 0.022 0.978 7 C -0.552 4.552 8 H 0.085 0.915 9 C -0.166 4.166 10 N -0.549 5.549 11 Si 0.764 3.236 12 H -0.202 1.202 13 H -0.220 1.220 14 H -0.190 1.190 15 N -0.327 5.327 16 C 0.072 3.928 17 C -0.184 4.184 18 C -0.111 4.111 19 C -0.092 4.092 20 Cl -0.021 7.021 21 N -0.175 5.175 22 C -0.148 4.148 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.239 0.761 34 H 0.187 0.813 35 H 0.189 0.811 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.658 -1.866 -9.788 11.458 hybrid contribution -1.505 -0.088 0.029 1.507 sum 4.153 -1.955 -9.759 10.784 Atomic orbital electron populations 1.21936 0.95362 1.01983 0.98942 1.20787 0.96014 0.94814 0.97501 1.21818 1.00085 0.96772 1.01052 1.21928 0.96159 0.98200 0.99181 1.18464 0.93718 0.89902 0.80298 0.97776 1.21125 0.91591 1.38874 1.03623 0.91479 1.25287 1.01088 0.94855 0.95387 1.69962 1.36718 1.40365 1.07830 0.85921 0.82015 0.78281 0.77344 1.20238 1.21963 1.18957 1.45245 1.07216 1.64450 1.15762 1.19184 0.86909 0.91963 0.94719 1.21340 0.96826 1.01998 0.98214 1.21795 0.92123 0.98639 0.98528 1.21444 0.88474 1.05549 0.93723 1.98334 1.17505 1.88494 1.97800 1.66645 1.17076 1.08850 1.24939 1.22050 0.87441 1.05191 1.00070 0.95508 0.94695 0.90852 0.92307 0.93526 0.92023 0.94120 0.90865 0.96499 0.92964 0.76095 0.81271 0.81053 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 7.76 71.98 0.56 -4.14 16 2 C -0.07 -2.64 2.78 -10.79 -0.03 -2.67 16 3 C -0.14 -4.51 9.16 71.98 0.66 -3.85 16 4 C -0.12 -4.91 4.48 30.59 0.14 -4.77 16 5 C 0.28 12.09 1.94 44.25 0.09 12.18 16 6 H 0.00 0.23 6.88 -2.39 -0.02 0.21 16 7 C -0.51 -23.55 5.32 25.60 0.14 -23.41 16 8 H 0.07 2.96 7.25 -2.91 -0.02 2.94 16 9 C 0.03 1.66 4.12 84.65 0.35 2.00 16 10 N -0.91 -47.42 11.29 21.44 0.24 -47.18 16 11 Si 0.94 39.41 29.54 68.60 2.03 41.44 16 12 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 15 N -0.70 -24.60 4.09 -322.14 -1.32 -25.92 16 16 C 0.18 6.15 6.64 38.28 0.25 6.41 16 17 C -0.15 -3.97 10.05 22.59 0.23 -3.74 16 18 C -0.09 -2.24 9.87 22.37 0.22 -2.02 16 19 C 0.07 2.32 7.27 84.72 0.62 2.94 16 20 Cl -0.05 -1.33 29.10 -2.72 -0.08 -1.41 16 21 N -0.46 -17.22 10.33 -186.17 -1.92 -19.14 16 22 C 0.02 0.61 9.91 84.83 0.84 1.45 16 23 H 0.03 1.12 7.17 -2.39 -0.02 1.11 16 24 H 0.03 1.13 8.09 -2.38 -0.02 1.11 16 25 H 0.07 2.85 5.30 -2.39 -0.01 2.84 16 26 H 0.06 2.02 7.20 -2.39 -0.02 2.00 16 27 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 3.61 5.85 -2.38 -0.01 3.59 16 31 H 0.02 0.70 6.99 -2.39 -0.02 0.68 16 32 H 0.26 13.33 8.31 -92.71 -0.77 12.55 16 33 H 0.40 12.50 8.53 -92.71 -0.79 11.71 16 34 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.14 5.86 5.70 -2.91 -0.02 5.84 16 Total: -1.00 -52.73 302.78 3.30 -49.43 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.30 Total: 22.41 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 4.05 Total: -19.63 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -3.00 Total: -92.24 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -52.73 3.30 -49.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381448407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.008 kcal (2) G-P(sol) polarization free energy of solvation -52.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds