Wall clock time and date at job start Mon Mar 30 2020 07:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 110.38257 * 2 1 4 4 N 1.46898 * 109.47098 * 299.22275 * 3 2 1 5 5 C 1.46903 * 110.99828 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46786 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47119 * 304.99082 * 6 5 4 8 8 C 1.47204 * 109.47441 * 64.99976 * 6 5 4 9 9 N 5.62773 * 63.19508 * 331.11570 * 2 1 3 10 10 C 1.53010 * 109.46826 * 184.99484 * 6 5 4 11 11 C 1.50698 * 109.46957 * 174.99557 * 10 6 5 12 12 H 1.08001 * 120.00324 * 0.02562 * 11 10 6 13 13 C 1.37875 * 119.99841 * 179.97438 * 11 10 6 14 14 N 1.31517 * 120.00384 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99831 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47444 * 60.00225 * 15 13 11 17 17 H 1.48501 * 109.47032 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47190 * 300.00119 * 15 13 11 19 19 C 1.53705 * 110.34247 * 122.22194 * 2 1 3 20 20 C 1.52939 * 112.49043 * 121.69960 * 19 2 1 21 21 C 1.55153 * 108.96209 * 329.90258 * 20 19 2 22 22 S 1.83394 * 110.34553 * 237.77185 * 2 1 3 23 23 H 1.09006 * 109.46682 * 180.77052 * 1 2 3 24 24 H 1.08991 * 109.47512 * 300.77266 * 1 2 3 25 25 H 1.08998 * 109.46549 * 60.77962 * 1 2 3 26 26 H 1.08994 * 109.47464 * 59.22736 * 3 2 1 27 27 H 1.09011 * 109.46629 * 179.22475 * 3 2 1 28 28 H 1.00894 * 110.99765 * 56.05168 * 4 3 2 29 29 H 1.09008 * 109.46883 * 299.99648 * 5 4 3 30 30 H 1.08998 * 109.47481 * 59.99481 * 5 4 3 31 31 H 1.09000 * 109.47010 * 294.99961 * 10 6 5 32 32 H 1.08998 * 109.46642 * 55.00301 * 10 6 5 33 33 H 0.96998 * 120.00448 * 179.97438 * 14 13 11 34 34 H 1.09007 * 108.88660 * 0.91330 * 19 2 1 35 35 H 1.08997 * 108.77950 * 242.42002 * 19 2 1 36 36 H 1.08999 * 109.60711 * 209.97123 * 20 19 2 37 37 H 1.08999 * 109.60366 * 89.82911 * 20 19 2 38 38 H 1.09001 * 111.13215 * 283.52933 * 21 20 19 39 39 H 1.08997 * 111.13487 * 159.34880 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 7 1.5996 2.1287 -1.2087 5 6 2.0937 3.5118 -1.2432 6 6 1.5911 4.2012 -2.5132 7 1 1.8816 3.6143 -3.3845 8 6 0.1242 4.3129 -2.4633 9 7 -1.0078 4.3981 -2.4263 10 6 2.2058 5.5990 -2.6120 11 6 1.8094 6.2306 -3.9215 12 1 1.1815 5.6896 -4.6139 13 6 2.2474 7.4997 -4.2352 14 7 3.0117 8.1589 -3.3919 15 14 1.7554 8.2830 -5.8581 16 1 0.2758 8.3864 -5.9294 17 1 2.3521 9.6395 -5.9540 18 1 2.2478 7.4456 -6.9813 19 6 2.0644 -0.7684 1.2192 20 6 2.9639 -1.9404 0.8239 21 6 2.5050 -2.4857 -0.5543 22 16 2.1677 -0.9170 -1.4546 23 1 -0.3633 -1.0276 0.0138 24 1 -0.3634 0.5257 0.8829 25 1 -0.3632 0.5017 -0.8969 26 1 1.6966 1.9580 0.8829 27 1 3.1528 1.4168 0.0139 28 1 0.5934 2.1021 -1.2777 29 1 1.7278 4.0502 -0.3688 30 1 3.1836 3.5085 -1.2380 31 1 1.8444 6.2139 -1.7877 32 1 3.2919 5.5227 -2.5595 33 1 3.3202 9.0516 -3.6128 34 1 1.2201 -1.1499 1.7936 35 1 2.6343 -0.0815 1.8448 36 1 2.8879 -2.7287 1.5728 37 1 3.9978 -1.6016 0.7572 38 1 1.6002 -3.0858 -0.4579 39 1 3.3007 -3.0527 -1.0373 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381459804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:24 Heat of formation + Delta-G solvation = 2.896170 kcal Electronic energy + Delta-G solvation = -17954.969704 eV Core-core repulsion = 15215.718571 eV Total energy + Delta-G solvation = -2739.251132 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.25533 -36.86819 -34.97620 -33.64560 -32.33592 -30.75217 -27.39428 -26.93017 -25.02745 -22.93362 -22.00873 -21.67145 -20.17609 -16.91988 -16.67676 -16.33743 -15.94233 -15.25094 -14.82280 -14.66534 -14.27820 -13.92739 -13.48085 -13.31416 -13.03753 -12.76201 -12.67276 -12.50045 -12.07872 -11.82790 -11.78744 -11.49922 -11.33640 -11.17269 -11.08607 -10.95308 -10.85727 -10.68984 -10.51619 -10.23495 -9.77329 -9.52135 -9.22345 -8.43305 -8.30633 -7.61573 -6.07551 -4.10584 1.77610 2.33918 3.33316 3.37023 3.41017 3.58043 3.64028 4.07685 4.33692 4.41247 4.46418 4.61280 4.72322 4.82472 4.92820 4.96260 5.22887 5.30400 5.33587 5.40554 5.46931 5.50020 5.56467 5.63108 5.68186 5.72609 5.73902 5.84131 6.03206 6.17966 6.37590 6.57114 7.07993 7.42191 7.46243 7.55052 7.87467 8.25347 8.41469 8.93715 9.54739 11.03338 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034869 B = 0.003577 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.818494 B = 7825.277821 C = 7936.836202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.014 4.014 3 C 0.080 3.920 4 N -0.687 5.687 5 C 0.069 3.931 6 C 0.007 3.993 7 H 0.112 0.888 8 C 0.242 3.758 9 N -0.478 5.478 10 C 0.033 3.967 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.092 4.092 22 S -0.236 6.236 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.338 0.662 29 H 0.034 0.966 30 H 0.092 0.908 31 H 0.024 0.976 32 H 0.040 0.960 33 H 0.263 0.737 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.392 -20.082 11.011 22.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.051 4.051 4 N -0.319 5.319 5 C -0.061 4.061 6 C -0.015 4.015 7 H 0.129 0.871 8 C -0.075 4.075 9 N -0.155 5.155 10 C -0.005 4.005 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.163 4.163 20 C -0.161 4.161 21 C -0.240 4.240 22 S -0.008 6.008 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.157 0.843 29 H 0.052 0.948 30 H 0.111 0.889 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.444 -19.705 9.520 21.889 hybrid contribution -0.570 0.654 0.912 1.259 sum -0.126 -19.051 10.432 21.721 Atomic orbital electron populations 1.22059 0.92374 1.02577 1.02571 1.23271 0.98173 0.97326 0.93688 1.21976 1.01004 0.90461 0.91610 1.60558 1.16533 1.16339 1.38422 1.22066 1.01326 0.86329 0.96333 1.19336 0.81323 1.02054 0.98832 0.87052 1.29333 0.95232 0.91064 0.91850 1.81019 1.13487 1.10949 1.10017 1.19156 0.96687 0.86699 0.98000 1.21116 1.31691 1.00637 1.03022 0.92549 1.24947 0.94873 0.97110 0.97007 1.69927 1.34668 1.12749 1.35764 0.86651 0.78902 0.78438 0.84083 1.20279 1.21202 1.19981 1.22137 1.00043 0.96981 0.97125 1.22331 1.00662 0.97223 0.95859 1.24376 1.04099 0.98161 0.97406 1.88352 1.84599 1.10259 1.17628 0.91933 0.92113 0.91178 0.94342 0.89660 0.84304 0.94798 0.88945 0.95801 0.94182 0.92760 0.90981 0.90224 0.90637 0.90426 0.89804 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.04 37.16 0.30 -1.04 16 2 C -0.01 -0.14 0.94 -90.25 -0.09 -0.23 16 3 C 0.08 0.89 4.46 -3.82 -0.02 0.88 16 4 N -0.69 -9.39 6.13 -113.77 -0.70 -10.09 16 5 C 0.07 1.04 5.12 -3.82 -0.02 1.02 16 6 C 0.01 0.12 2.42 -93.40 -0.23 -0.10 16 7 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 8 C 0.24 4.98 12.98 -20.76 -0.27 4.71 16 9 N -0.48 -10.54 18.54 42.15 0.78 -9.76 16 10 C 0.03 0.78 4.42 -27.88 -0.12 0.65 16 11 C -0.53 -14.22 8.60 -34.44 -0.30 -14.51 16 12 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 15 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.12 -0.94 5.75 -26.40 -0.15 -1.09 16 20 C -0.12 -0.84 6.34 -25.62 -0.16 -1.00 16 21 C -0.09 -0.74 7.52 38.30 0.29 -0.45 16 22 S -0.24 -2.78 21.78 -107.50 -2.34 -5.13 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.80 6.71 -51.93 -0.35 0.46 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.95 8.14 -51.92 -0.42 0.52 16 28 H 0.34 4.83 5.98 -39.30 -0.23 4.60 16 29 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 34 H 0.07 0.49 7.62 -51.92 -0.40 0.09 16 35 H 0.08 0.56 7.62 -51.93 -0.40 0.16 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 332.30 15.07 5.01 5.01 Total: -1.00 -30.04 332.30 -8.80 -38.84 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.40 Total: -0.88 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.86 Total: -9.52 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.82 Total: -44.86 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -2.78 SS G_CDS: -2.34 Total: -5.13 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.04 -8.80 -38.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381459804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.739 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds