Wall clock time and date at job start Mon Mar 30 2020 07:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 110.38257 * 2 1 4 4 N 1.46898 * 109.47098 * 299.22275 * 3 2 1 5 5 C 1.46903 * 110.99828 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46786 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47119 * 304.99082 * 6 5 4 8 8 C 1.47204 * 109.47441 * 64.99976 * 6 5 4 9 9 N 5.62773 * 63.19508 * 331.11570 * 2 1 3 10 10 C 1.53010 * 109.46826 * 184.99484 * 6 5 4 11 11 C 1.50698 * 109.46957 * 174.99557 * 10 6 5 12 12 H 1.08001 * 120.00324 * 0.02562 * 11 10 6 13 13 C 1.37875 * 119.99841 * 179.97438 * 11 10 6 14 14 N 1.31517 * 120.00384 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99831 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47444 * 60.00225 * 15 13 11 17 17 H 1.48501 * 109.47032 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47190 * 300.00119 * 15 13 11 19 19 C 1.53705 * 110.34247 * 122.22194 * 2 1 3 20 20 C 1.52939 * 112.49043 * 121.69960 * 19 2 1 21 21 C 1.55153 * 108.96209 * 329.90258 * 20 19 2 22 22 S 1.83394 * 110.34553 * 237.77185 * 2 1 3 23 23 H 1.09006 * 109.46682 * 180.77052 * 1 2 3 24 24 H 1.08991 * 109.47512 * 300.77266 * 1 2 3 25 25 H 1.08998 * 109.46549 * 60.77962 * 1 2 3 26 26 H 1.08994 * 109.47464 * 59.22736 * 3 2 1 27 27 H 1.09011 * 109.46629 * 179.22475 * 3 2 1 28 28 H 1.00894 * 110.99765 * 56.05168 * 4 3 2 29 29 H 1.09008 * 109.46883 * 299.99648 * 5 4 3 30 30 H 1.08998 * 109.47481 * 59.99481 * 5 4 3 31 31 H 1.09000 * 109.47010 * 294.99961 * 10 6 5 32 32 H 1.08998 * 109.46642 * 55.00301 * 10 6 5 33 33 H 0.96998 * 120.00448 * 179.97438 * 14 13 11 34 34 H 1.09007 * 108.88660 * 0.91330 * 19 2 1 35 35 H 1.08997 * 108.77950 * 242.42002 * 19 2 1 36 36 H 1.08999 * 109.60711 * 209.97123 * 20 19 2 37 37 H 1.08999 * 109.60366 * 89.82911 * 20 19 2 38 38 H 1.09001 * 111.13215 * 283.52933 * 21 20 19 39 39 H 1.08997 * 111.13487 * 159.34880 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 7 1.5996 2.1287 -1.2087 5 6 2.0937 3.5118 -1.2432 6 6 1.5911 4.2012 -2.5132 7 1 1.8816 3.6143 -3.3845 8 6 0.1242 4.3129 -2.4633 9 7 -1.0078 4.3981 -2.4263 10 6 2.2058 5.5990 -2.6120 11 6 1.8094 6.2306 -3.9215 12 1 1.1815 5.6896 -4.6139 13 6 2.2474 7.4997 -4.2352 14 7 3.0117 8.1589 -3.3919 15 14 1.7554 8.2830 -5.8581 16 1 0.2758 8.3864 -5.9294 17 1 2.3521 9.6395 -5.9540 18 1 2.2478 7.4456 -6.9813 19 6 2.0644 -0.7684 1.2192 20 6 2.9639 -1.9404 0.8239 21 6 2.5050 -2.4857 -0.5543 22 16 2.1677 -0.9170 -1.4546 23 1 -0.3633 -1.0276 0.0138 24 1 -0.3634 0.5257 0.8829 25 1 -0.3632 0.5017 -0.8969 26 1 1.6966 1.9580 0.8829 27 1 3.1528 1.4168 0.0139 28 1 0.5934 2.1021 -1.2777 29 1 1.7278 4.0502 -0.3688 30 1 3.1836 3.5085 -1.2380 31 1 1.8444 6.2139 -1.7877 32 1 3.2919 5.5227 -2.5595 33 1 3.3202 9.0516 -3.6128 34 1 1.2201 -1.1499 1.7936 35 1 2.6343 -0.0815 1.8448 36 1 2.8879 -2.7287 1.5728 37 1 3.9978 -1.6016 0.7572 38 1 1.6002 -3.0858 -0.4579 39 1 3.3007 -3.0527 -1.0373 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381459804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:24 Heat of formation + Delta-G solvation = -14.247332 kcal Electronic energy + Delta-G solvation = -17955.713102 eV Core-core repulsion = 15215.718571 eV Total energy + Delta-G solvation = -2739.994530 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.31274 -38.12822 -36.22794 -35.37643 -33.75088 -32.02106 -28.66643 -27.92391 -26.23745 -24.19970 -23.57252 -22.71867 -20.89237 -18.57450 -18.25391 -17.64073 -16.70713 -16.63408 -16.16650 -15.65708 -15.34044 -15.06085 -14.65233 -14.56007 -14.22452 -14.06608 -13.86033 -13.75295 -13.43502 -13.35870 -13.08478 -12.73647 -12.50819 -12.45811 -12.39965 -12.26427 -12.07207 -11.89385 -11.78917 -11.50640 -11.36310 -11.11757 -10.55460 -10.54396 -9.36981 -8.51314 -8.20012 -6.28367 1.02028 1.40832 1.41731 1.49326 1.62419 1.91520 1.94315 2.41070 3.12151 3.14732 3.23428 3.65347 3.70768 3.91810 4.03822 4.17758 4.22852 4.39057 4.39745 4.58362 4.62632 4.68999 4.70070 4.80013 4.85780 4.92980 4.94923 4.98566 5.05666 5.08359 5.24074 5.29322 5.45956 5.61461 5.78343 5.98604 6.20680 6.31024 6.72808 6.85808 7.40035 8.90728 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034869 B = 0.003577 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.818494 B = 7825.277821 C = 7936.836202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.001 4.001 3 C 0.079 3.921 4 N -0.691 5.691 5 C 0.081 3.919 6 C 0.019 3.981 7 H 0.117 0.883 8 C 0.251 3.749 9 N -0.503 5.503 10 C 0.040 3.960 11 C -0.542 4.542 12 H 0.052 0.948 13 C 0.012 3.988 14 N -0.923 5.923 15 Si 0.948 3.052 16 H -0.281 1.281 17 H -0.280 1.280 18 H -0.264 1.264 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.074 4.074 22 S -0.319 6.319 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.334 0.666 29 H 0.036 0.964 30 H 0.104 0.896 31 H 0.002 0.998 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 -21.473 11.935 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.051 4.051 4 N -0.323 5.323 5 C -0.049 4.049 6 C -0.003 4.003 7 H 0.135 0.865 8 C -0.065 4.065 9 N -0.181 5.181 10 C 0.001 3.999 11 C -0.580 4.580 12 H 0.070 0.930 13 C -0.187 4.187 14 N -0.562 5.562 15 Si 0.774 3.226 16 H -0.206 1.206 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.162 4.162 20 C -0.157 4.157 21 C -0.222 4.222 22 S -0.092 6.092 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.152 0.848 29 H 0.055 0.945 30 H 0.122 0.878 31 H 0.021 0.979 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.671 -21.115 10.446 23.567 hybrid contribution -0.644 1.035 0.645 1.379 sum 0.027 -20.080 11.091 22.940 Atomic orbital electron populations 1.22031 0.92377 1.02977 1.01976 1.23265 0.97997 0.96436 0.93381 1.22057 1.01138 0.91088 0.90809 1.60532 1.16233 1.15252 1.40268 1.21892 1.01783 0.87010 0.94181 1.19216 0.79980 0.99894 1.01230 0.86529 1.29641 0.95525 0.90319 0.90990 1.81015 1.14315 1.11650 1.11089 1.18972 0.96520 0.88717 0.95669 1.21526 1.31234 1.00966 1.04269 0.92976 1.25703 0.95040 0.97842 1.00076 1.70019 1.35745 1.13120 1.37353 0.85752 0.78185 0.77934 0.80738 1.20636 1.20537 1.18894 1.22161 1.00796 0.97213 0.95984 1.22331 1.00255 0.97538 0.95540 1.24445 1.04778 0.95776 0.97224 1.88596 1.85126 1.14262 1.21203 0.91117 0.90951 0.93364 0.93106 0.89523 0.84786 0.94547 0.87820 0.97936 0.94579 0.92651 0.89616 0.89300 0.88239 0.90640 0.88871 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.04 71.98 0.58 -1.88 16 2 C 0.00 -0.01 0.94 -10.55 -0.01 -0.02 16 3 C 0.08 1.64 4.46 86.30 0.39 2.02 16 4 N -0.69 -18.32 6.13 -513.86 -3.15 -21.47 16 5 C 0.08 2.38 5.12 86.30 0.44 2.82 16 6 C 0.02 0.70 2.42 -12.59 -0.03 0.67 16 7 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 8 C 0.25 10.32 12.98 89.45 1.16 11.48 16 9 N -0.50 -22.18 18.54 20.00 0.37 -21.81 16 10 C 0.04 1.89 4.42 29.85 0.13 2.02 16 11 C -0.54 -29.35 8.60 25.60 0.22 -29.13 16 12 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 13 C 0.01 0.69 5.46 84.65 0.46 1.16 16 14 N -0.92 -53.51 13.29 21.45 0.28 -53.22 16 15 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 19 C -0.12 -1.51 5.75 30.81 0.18 -1.33 16 20 C -0.12 -1.28 6.34 31.31 0.20 -1.08 16 21 C -0.07 -1.04 7.52 72.72 0.55 -0.50 16 22 S -0.32 -7.32 21.78 -56.49 -1.23 -8.55 16 23 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.05 1.09 6.71 -2.39 -0.02 1.08 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.33 9.39 5.98 -89.70 -0.54 8.85 16 29 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.26 14.58 8.31 -92.71 -0.77 13.80 16 34 H 0.09 0.85 7.62 -2.38 -0.02 0.84 16 35 H 0.09 0.96 7.62 -2.39 -0.02 0.95 16 36 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 39 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -64.08 332.30 3.05 -61.03 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.49 Total: 11.67 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 4.26 Total: -13.77 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -2.50 Total: -96.50 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -7.32 SS G_CDS: -1.23 Total: -8.55 kcal Total: -64.08 3.05 -61.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381459804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.778 kcal (2) G-P(sol) polarization free energy of solvation -64.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds