Wall clock time and date at job start Mon Mar 30 2020 07:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 110.30621 * 2 1 4 4 N 1.46905 * 109.47039 * 65.71832 * 3 2 1 5 5 C 1.46901 * 110.99870 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47143 * 54.99734 * 6 5 4 8 8 C 1.47195 * 109.46869 * 294.99835 * 6 5 4 9 9 N 5.62768 * 65.49458 * 32.53921 * 2 1 3 10 10 C 1.52997 * 109.46820 * 175.00024 * 6 5 4 11 11 C 1.50708 * 109.47042 * 185.00012 * 10 6 5 12 12 H 1.08004 * 119.99423 * 359.97438 * 11 10 6 13 13 C 1.37873 * 119.99854 * 180.02562 * 11 10 6 14 14 N 1.31510 * 120.00179 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99744 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47735 * 89.99581 * 15 13 11 17 17 H 1.48498 * 109.46856 * 210.00092 * 15 13 11 18 18 H 1.48506 * 109.46711 * 329.99483 * 15 13 11 19 19 C 1.53710 * 110.42670 * 237.76625 * 2 1 3 20 20 C 1.52941 * 112.49060 * 238.25554 * 19 2 1 21 21 C 1.55152 * 108.96142 * 30.10500 * 20 19 2 22 22 S 1.83398 * 110.34135 * 122.17479 * 2 1 3 23 23 H 1.08997 * 109.47476 * 60.70066 * 1 2 3 24 24 H 1.09003 * 109.47382 * 180.70103 * 1 2 3 25 25 H 1.08997 * 109.47171 * 300.69997 * 1 2 3 26 26 H 1.09001 * 109.47393 * 305.72113 * 3 2 1 27 27 H 1.08998 * 109.47408 * 185.71758 * 3 2 1 28 28 H 1.00901 * 110.99869 * 56.04956 * 4 3 2 29 29 H 1.09004 * 109.47031 * 299.99620 * 5 4 3 30 30 H 1.08995 * 109.47111 * 59.99900 * 5 4 3 31 31 H 1.09008 * 109.47139 * 304.99603 * 10 6 5 32 32 H 1.09001 * 109.47414 * 64.99548 * 10 6 5 33 33 H 0.97000 * 119.99957 * 180.02562 * 14 13 11 34 34 H 1.08992 * 108.88929 * 359.05267 * 19 2 1 35 35 H 1.09007 * 108.88238 * 117.46767 * 19 2 1 36 36 H 1.08998 * 109.60659 * 270.17424 * 20 19 2 37 37 H 1.09005 * 109.60396 * 150.03742 * 20 19 2 38 38 H 1.09000 * 111.13239 * 200.64656 * 21 20 19 39 39 H 1.09000 * 111.12923 * 76.46903 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4348 0.0000 4 7 1.6967 2.0917 1.2625 5 6 2.1907 3.4748 1.2980 6 6 1.7934 4.1243 2.6251 7 1 2.1547 3.5124 3.4516 8 6 0.3273 4.2324 2.6989 9 7 -0.8043 4.3169 2.7543 10 6 2.4130 5.5203 2.7152 11 6 2.1246 6.1113 4.0712 12 1 1.5559 5.5476 4.7961 13 6 2.5859 7.3719 4.3860 14 7 3.2779 8.0583 3.5032 15 14 2.2291 8.1041 6.0671 16 1 3.3199 7.7409 7.0070 17 1 2.1439 9.5824 5.9551 18 1 0.9396 7.5711 6.5756 19 6 2.0664 -0.7683 -1.2184 20 6 2.9673 -1.9388 -0.8218 21 6 2.5079 -2.4842 0.5561 22 16 2.1675 -0.9157 1.4555 23 1 -0.3634 0.5029 -0.8962 24 1 -0.3634 -1.0276 0.0126 25 1 -0.3633 0.5247 0.8836 26 1 1.6243 1.9839 -0.8343 27 1 3.1460 1.4208 -0.1024 28 1 2.0353 1.5661 2.0544 29 1 3.2767 3.4752 1.2044 30 1 1.7547 4.0376 0.4727 31 1 3.4912 5.4493 2.5717 32 1 1.9848 6.1585 1.9422 33 1 3.6027 8.9451 3.7249 34 1 1.2233 -1.1510 -1.7934 35 1 2.6354 -0.0820 -1.8458 36 1 4.0006 -1.5985 -0.7543 37 1 2.8932 -2.7275 -1.5705 38 1 3.3039 -3.0500 1.0402 39 1 1.6040 -3.0856 0.4591 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381459810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:27 Heat of formation + Delta-G solvation = 1.355798 kcal Electronic energy + Delta-G solvation = -17957.174216 eV Core-core repulsion = 15217.856288 eV Total energy + Delta-G solvation = -2739.317928 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.14628 -36.79228 -34.95862 -33.57106 -32.34439 -30.78288 -27.29062 -26.93922 -24.95324 -22.87498 -22.06537 -21.68083 -20.29286 -17.13356 -16.44391 -16.35730 -15.87844 -15.14784 -14.97041 -14.58462 -14.07661 -13.96383 -13.68722 -13.38020 -12.90979 -12.74112 -12.49330 -12.23116 -12.08969 -11.89456 -11.81137 -11.45278 -11.24856 -11.17955 -11.08618 -11.04151 -10.88402 -10.64901 -10.48043 -10.21004 -9.88532 -9.51383 -9.20231 -8.43972 -8.28878 -7.80787 -6.07606 -4.10490 1.65256 2.17611 3.31163 3.37829 3.43087 3.77827 3.87899 4.06162 4.33331 4.40486 4.45340 4.59194 4.80321 4.87394 4.94038 4.98782 5.21343 5.28319 5.30638 5.45029 5.48890 5.54435 5.58947 5.67655 5.74107 5.78657 5.80158 5.85187 6.05754 6.26425 6.41150 6.52403 7.08291 7.44376 7.49684 7.55674 7.87937 8.25576 8.62866 8.94294 9.54925 11.03350 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034487 B = 0.003598 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.694504 B = 7779.388695 C = 7876.091205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.005 4.005 3 C 0.081 3.919 4 N -0.690 5.690 5 C 0.067 3.933 6 C 0.009 3.991 7 H 0.099 0.901 8 C 0.256 3.744 9 N -0.479 5.479 10 C 0.032 3.968 11 C -0.525 4.525 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.075 4.075 22 S -0.283 6.283 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.345 0.655 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.026 0.974 33 H 0.262 0.738 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.930 -20.347 -11.082 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.115 4.115 3 C -0.050 4.050 4 N -0.323 5.323 5 C -0.063 4.063 6 C -0.013 4.013 7 H 0.116 0.884 8 C -0.061 4.061 9 N -0.156 5.156 10 C -0.007 4.007 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.223 4.223 22 S -0.055 6.055 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.165 0.835 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.163 -19.553 -10.061 21.990 hybrid contribution 1.115 0.006 -0.096 1.119 sum 0.951 -19.547 -10.157 22.049 Atomic orbital electron populations 1.21919 0.91334 1.01637 1.03467 1.23314 0.99160 0.96605 0.92458 1.21949 0.97961 0.91035 0.94023 1.60559 1.64404 1.03302 1.03997 1.22063 0.98206 0.87961 0.98035 1.19207 0.82651 1.02195 0.97217 0.88352 1.28842 0.94744 0.90803 0.91698 1.80976 1.13506 1.11165 1.09981 1.19168 0.96410 0.86943 0.98152 1.21155 1.34778 1.01194 0.99234 0.92481 1.24948 0.94916 0.96968 0.97138 1.69937 1.36504 1.12274 1.34394 0.86591 0.78861 0.78320 0.84328 1.20474 1.21165 1.19821 1.22163 1.00074 0.96940 0.97281 1.22359 1.00648 0.97434 0.95782 1.24325 1.04243 0.96873 0.96894 1.87978 1.84426 1.13270 1.19841 0.92145 0.92849 0.90257 0.90020 0.94142 0.83519 0.93201 0.90474 0.94455 0.95554 0.92827 0.90783 0.90157 0.90489 0.90391 0.87890 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.28 37.16 0.31 -1.00 16 2 C -0.01 -0.05 0.95 -90.26 -0.09 -0.14 16 3 C 0.08 0.90 4.47 -3.82 -0.02 0.88 16 4 N -0.69 -9.46 5.72 -113.78 -0.65 -10.11 16 5 C 0.07 1.01 5.05 -3.82 -0.02 1.00 16 6 C 0.01 0.18 2.35 -93.41 -0.22 -0.04 16 7 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 8 C 0.26 5.49 13.67 -20.76 -0.28 5.20 16 9 N -0.48 -11.13 18.54 42.16 0.78 -10.35 16 10 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 11 C -0.53 -14.20 8.60 -34.44 -0.30 -14.50 16 12 H 0.06 1.54 7.59 -52.48 -0.40 1.14 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 15 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.13 -0.94 5.74 -26.39 -0.15 -1.09 16 20 C -0.12 -0.81 6.34 -25.62 -0.16 -0.98 16 21 C -0.07 -0.57 7.52 38.30 0.29 -0.29 16 22 S -0.28 -3.15 20.64 -107.50 -2.22 -5.37 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 1.04 7.81 -51.93 -0.41 0.63 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.34 4.83 7.25 -39.29 -0.28 4.55 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.07 0.50 7.62 -51.93 -0.40 0.10 16 35 H 0.08 0.55 7.62 -51.92 -0.40 0.16 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -30.41 333.94 -8.71 -39.12 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.51 Total: -1.16 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -0.86 Total: -8.68 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.87 Total: -45.48 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.22 Total: -5.37 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.41 -8.71 -39.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381459810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.479 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds