Wall clock time and date at job start Mon Mar 30 2020 07:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 110.30621 * 2 1 4 4 N 1.46905 * 109.47039 * 65.71832 * 3 2 1 5 5 C 1.46901 * 110.99870 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47143 * 54.99734 * 6 5 4 8 8 C 1.47195 * 109.46869 * 294.99835 * 6 5 4 9 9 N 5.62768 * 65.49458 * 32.53921 * 2 1 3 10 10 C 1.52997 * 109.46820 * 175.00024 * 6 5 4 11 11 C 1.50708 * 109.47042 * 185.00012 * 10 6 5 12 12 H 1.08004 * 119.99423 * 359.97438 * 11 10 6 13 13 C 1.37873 * 119.99854 * 180.02562 * 11 10 6 14 14 N 1.31510 * 120.00179 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99744 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47735 * 89.99581 * 15 13 11 17 17 H 1.48498 * 109.46856 * 210.00092 * 15 13 11 18 18 H 1.48506 * 109.46711 * 329.99483 * 15 13 11 19 19 C 1.53710 * 110.42670 * 237.76625 * 2 1 3 20 20 C 1.52941 * 112.49060 * 238.25554 * 19 2 1 21 21 C 1.55152 * 108.96142 * 30.10500 * 20 19 2 22 22 S 1.83398 * 110.34135 * 122.17479 * 2 1 3 23 23 H 1.08997 * 109.47476 * 60.70066 * 1 2 3 24 24 H 1.09003 * 109.47382 * 180.70103 * 1 2 3 25 25 H 1.08997 * 109.47171 * 300.69997 * 1 2 3 26 26 H 1.09001 * 109.47393 * 305.72113 * 3 2 1 27 27 H 1.08998 * 109.47408 * 185.71758 * 3 2 1 28 28 H 1.00901 * 110.99869 * 56.04956 * 4 3 2 29 29 H 1.09004 * 109.47031 * 299.99620 * 5 4 3 30 30 H 1.08995 * 109.47111 * 59.99900 * 5 4 3 31 31 H 1.09008 * 109.47139 * 304.99603 * 10 6 5 32 32 H 1.09001 * 109.47414 * 64.99548 * 10 6 5 33 33 H 0.97000 * 119.99957 * 180.02562 * 14 13 11 34 34 H 1.08992 * 108.88929 * 359.05267 * 19 2 1 35 35 H 1.09007 * 108.88238 * 117.46767 * 19 2 1 36 36 H 1.08998 * 109.60659 * 270.17424 * 20 19 2 37 37 H 1.09005 * 109.60396 * 150.03742 * 20 19 2 38 38 H 1.09000 * 111.13239 * 200.64656 * 21 20 19 39 39 H 1.09000 * 111.12923 * 76.46903 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4348 0.0000 4 7 1.6967 2.0917 1.2625 5 6 2.1907 3.4748 1.2980 6 6 1.7934 4.1243 2.6251 7 1 2.1547 3.5124 3.4516 8 6 0.3273 4.2324 2.6989 9 7 -0.8043 4.3169 2.7543 10 6 2.4130 5.5203 2.7152 11 6 2.1246 6.1113 4.0712 12 1 1.5559 5.5476 4.7961 13 6 2.5859 7.3719 4.3860 14 7 3.2779 8.0583 3.5032 15 14 2.2291 8.1041 6.0671 16 1 3.3199 7.7409 7.0070 17 1 2.1439 9.5824 5.9551 18 1 0.9396 7.5711 6.5756 19 6 2.0664 -0.7683 -1.2184 20 6 2.9673 -1.9388 -0.8218 21 6 2.5079 -2.4842 0.5561 22 16 2.1675 -0.9157 1.4555 23 1 -0.3634 0.5029 -0.8962 24 1 -0.3634 -1.0276 0.0126 25 1 -0.3633 0.5247 0.8836 26 1 1.6243 1.9839 -0.8343 27 1 3.1460 1.4208 -0.1024 28 1 2.0353 1.5661 2.0544 29 1 3.2767 3.4752 1.2044 30 1 1.7547 4.0376 0.4727 31 1 3.4912 5.4493 2.5717 32 1 1.9848 6.1585 1.9422 33 1 3.6027 8.9451 3.7249 34 1 1.2233 -1.1510 -1.7934 35 1 2.6354 -0.0820 -1.8458 36 1 4.0006 -1.5985 -0.7543 37 1 2.8932 -2.7275 -1.5705 38 1 3.3039 -3.0500 1.0402 39 1 1.6040 -3.0856 0.4591 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381459810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:27 Heat of formation + Delta-G solvation = -16.041586 kcal Electronic energy + Delta-G solvation = -17957.928623 eV Core-core repulsion = 15217.856288 eV Total energy + Delta-G solvation = -2740.072335 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.18036 -38.07628 -36.23747 -35.34483 -33.72871 -32.07146 -28.67275 -27.82752 -26.19509 -24.13272 -23.50269 -22.85097 -21.01124 -18.65202 -18.36299 -17.27133 -16.75101 -16.47439 -16.19640 -15.84965 -15.27526 -15.09154 -14.54786 -14.50708 -14.25813 -14.15257 -13.76218 -13.47310 -13.36838 -13.28511 -13.10092 -12.93971 -12.49169 -12.46123 -12.43636 -12.25792 -11.99628 -11.87781 -11.87003 -11.53050 -11.36389 -11.10181 -10.63163 -10.55379 -9.34556 -8.65551 -8.20060 -6.28263 0.92563 1.39796 1.41504 1.48741 1.51120 2.05850 2.13025 2.41246 3.12028 3.15627 3.33896 3.65534 3.77668 3.91022 4.09013 4.13568 4.23736 4.36397 4.38579 4.59940 4.69620 4.70808 4.75219 4.81360 4.84766 4.89073 4.97815 4.99328 5.05584 5.10920 5.25640 5.38998 5.45656 5.61016 5.78242 5.99347 6.21012 6.40851 6.82165 6.92270 7.40264 8.90892 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034487 B = 0.003598 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.694504 B = 7779.388695 C = 7876.091205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.006 3.994 3 C 0.081 3.919 4 N -0.698 5.698 5 C 0.080 3.920 6 C 0.019 3.981 7 H 0.112 0.888 8 C 0.266 3.734 9 N -0.513 5.513 10 C 0.039 3.961 11 C -0.541 4.541 12 H 0.052 0.948 13 C 0.012 3.988 14 N -0.923 5.923 15 Si 0.949 3.051 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.277 1.277 19 C -0.124 4.124 20 C -0.119 4.119 21 C -0.060 4.060 22 S -0.352 6.352 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.344 0.656 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.003 0.997 33 H 0.264 0.736 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.524 -21.858 -11.907 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.104 4.104 3 C -0.050 4.050 4 N -0.331 5.331 5 C -0.050 4.050 6 C -0.002 4.002 7 H 0.130 0.870 8 C -0.050 4.050 9 N -0.190 5.190 10 C 0.000 4.000 11 C -0.579 4.579 12 H 0.070 0.930 13 C -0.187 4.187 14 N -0.562 5.562 15 Si 0.775 3.225 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.202 1.202 19 C -0.163 4.163 20 C -0.158 4.158 21 C -0.208 4.208 22 S -0.125 6.125 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.163 0.837 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.434 -21.081 -10.890 23.732 hybrid contribution 0.918 0.427 0.144 1.022 sum 1.352 -20.655 -10.746 23.322 Atomic orbital electron populations 1.21857 0.91961 1.01809 1.02320 1.23286 0.98490 0.95957 0.92695 1.22029 0.98534 0.91672 0.92719 1.60515 1.64691 1.02625 1.05237 1.21867 0.99039 0.88695 0.95446 1.19161 0.80766 1.00203 1.00114 0.87031 1.29323 0.95245 0.89851 0.90611 1.80969 1.14624 1.12122 1.11320 1.18983 0.96330 0.88885 0.95767 1.21550 1.34247 1.01474 1.00600 0.92984 1.25701 0.94958 0.97593 1.00422 1.70027 1.37520 1.12673 1.36029 0.85687 0.78687 0.77539 0.80626 1.19135 1.20842 1.20197 1.22178 1.00803 0.97238 0.96069 1.22355 1.00220 0.97646 0.95534 1.24433 1.04964 0.94658 0.96734 1.88211 1.84799 1.16808 1.22688 0.91294 0.91991 0.93323 0.89419 0.93402 0.83662 0.91638 0.90597 0.94635 0.97854 0.92667 0.89597 0.89233 0.90595 0.87999 0.86922 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.28 71.98 0.60 -1.81 16 2 C 0.01 0.10 0.95 -10.56 -0.01 0.09 16 3 C 0.08 1.67 4.47 86.30 0.39 2.06 16 4 N -0.70 -18.56 5.72 -513.88 -2.94 -21.50 16 5 C 0.08 2.33 5.05 86.30 0.44 2.76 16 6 C 0.02 0.73 2.35 -12.60 -0.03 0.70 16 7 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 8 C 0.27 11.41 13.67 89.44 1.22 12.63 16 9 N -0.51 -23.96 18.54 20.01 0.37 -23.59 16 10 C 0.04 1.84 4.42 29.85 0.13 1.98 16 11 C -0.54 -29.28 8.60 25.60 0.22 -29.06 16 12 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 13 C 0.01 0.68 5.46 84.65 0.46 1.14 16 14 N -0.92 -53.45 13.29 21.45 0.28 -53.16 16 15 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 19 C -0.12 -1.50 5.74 30.81 0.18 -1.32 16 20 C -0.12 -1.19 6.34 31.31 0.20 -0.99 16 21 C -0.06 -0.78 7.52 72.72 0.55 -0.23 16 22 S -0.35 -7.53 20.64 -56.49 -1.17 -8.70 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.05 1.27 7.81 -2.39 -0.02 1.25 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.34 9.45 7.25 -89.69 -0.65 8.80 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.09 0.86 7.62 -2.39 -0.02 0.85 16 35 H 0.09 0.95 7.62 -2.38 -0.02 0.93 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -65.07 333.94 3.29 -61.78 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.37 Total: 11.08 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 4.34 Total: -12.06 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -2.28 Total: -98.25 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -7.53 SS G_CDS: -1.17 Total: -8.70 kcal Total: -65.07 3.29 -61.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381459810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.740 kcal (2) G-P(sol) polarization free energy of solvation -65.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds