Wall clock time and date at job start Mon Mar 30 2020 07:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 110.29907 * 2 1 4 4 N 1.46898 * 109.47257 * 65.72068 * 3 2 1 5 5 C 1.46901 * 111.00004 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47062 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47114 * 305.00018 * 6 5 4 8 8 C 1.47199 * 109.47168 * 65.00318 * 6 5 4 9 9 N 5.62770 * 105.20314 * 57.63432 * 2 1 3 10 10 C 1.52998 * 109.47071 * 185.00307 * 6 5 4 11 11 C 1.50706 * 109.47348 * 174.99997 * 10 6 5 12 12 H 1.08005 * 119.99758 * 359.97438 * 11 10 6 13 13 C 1.37871 * 120.00102 * 179.97438 * 11 10 6 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47483 * 269.99808 * 15 13 11 17 17 H 1.48499 * 109.47134 * 30.00322 * 15 13 11 18 18 H 1.48507 * 109.46904 * 150.00145 * 15 13 11 19 19 C 1.53707 * 110.42953 * 237.77235 * 2 1 3 20 20 C 1.52940 * 112.48787 * 238.25708 * 19 2 1 21 21 C 1.55151 * 108.96524 * 30.09723 * 20 19 2 22 22 S 1.83394 * 110.34142 * 122.17037 * 2 1 3 23 23 H 1.08998 * 109.47623 * 60.69845 * 1 2 3 24 24 H 1.09007 * 109.47000 * 180.70143 * 1 2 3 25 25 H 1.09001 * 109.47127 * 300.69829 * 1 2 3 26 26 H 1.09004 * 109.47536 * 305.71701 * 3 2 1 27 27 H 1.09007 * 109.47199 * 185.71681 * 3 2 1 28 28 H 1.00890 * 111.00032 * 303.94958 * 4 3 2 29 29 H 1.09001 * 109.46974 * 60.00309 * 5 4 3 30 30 H 1.08996 * 109.47333 * 300.00274 * 5 4 3 31 31 H 1.09001 * 109.47671 * 55.00206 * 10 6 5 32 32 H 1.09006 * 109.47297 * 294.99926 * 10 6 5 33 33 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 34 34 H 1.08998 * 108.88658 * 359.04772 * 19 2 1 35 35 H 1.08994 * 108.88895 * 117.45774 * 19 2 1 36 36 H 1.09007 * 109.59847 * 270.16454 * 20 19 2 37 37 H 1.09003 * 109.60431 * 150.03292 * 20 19 2 38 38 H 1.09000 * 111.13065 * 200.65495 * 21 20 19 39 39 H 1.08997 * 111.12870 * 76.46945 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0608 1.4350 0.0000 4 7 1.6966 2.0918 1.2625 5 6 2.1914 3.4745 1.2984 6 6 1.7930 4.1244 2.6250 7 1 0.7141 4.0453 2.7588 8 6 2.4766 3.4373 3.7328 9 7 3.0058 2.9072 4.5871 10 6 2.1985 5.5996 2.6121 11 6 1.6978 6.2692 3.8661 12 1 1.1453 5.6995 4.5986 13 6 1.9451 7.6089 4.0780 14 7 2.6175 8.3027 3.1857 15 14 1.3239 8.4388 5.6319 16 1 -0.0371 8.9827 5.3925 17 1 1.2736 7.4475 6.7364 18 1 2.2414 9.5463 6.0022 19 6 2.0665 -0.7681 -1.2185 20 6 2.9674 -1.9387 -0.8218 21 6 2.5080 -2.4841 0.5561 22 16 2.1675 -0.9156 1.4556 23 1 -0.3634 0.5029 -0.8961 24 1 -0.3633 -1.0277 0.0126 25 1 -0.3633 0.5246 0.8837 26 1 1.6242 1.9840 -0.8344 27 1 3.1459 1.4210 -0.1024 28 1 0.6993 2.0605 1.4118 29 1 1.7560 4.0378 0.4731 30 1 3.2774 3.4743 1.2051 31 1 1.7632 6.0886 1.7407 32 1 3.2848 5.6776 2.5677 33 1 2.9397 7.8718 2.3787 34 1 1.2234 -1.1509 -1.7935 35 1 2.6353 -0.0819 -1.8458 36 1 4.0007 -1.5983 -0.7544 37 1 2.8932 -2.7273 -1.5706 38 1 3.3042 -3.0497 1.0401 39 1 1.6041 -3.0855 0.4591 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381459824.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:34 Heat of formation + Delta-G solvation = -0.311556 kcal Electronic energy + Delta-G solvation = -18003.945510 eV Core-core repulsion = 15264.555281 eV Total energy + Delta-G solvation = -2739.390230 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.26454 -36.85521 -34.98242 -33.81082 -32.41706 -30.69081 -27.37622 -26.71032 -24.83128 -22.88096 -22.07037 -21.91567 -20.21618 -17.48335 -16.79722 -16.31801 -15.87561 -15.12719 -14.90993 -14.47753 -14.04623 -13.79466 -13.72104 -13.30511 -13.21955 -13.06270 -12.75157 -12.13666 -12.09390 -11.83902 -11.80475 -11.50094 -11.38310 -11.32182 -11.09787 -10.92267 -10.87916 -10.63043 -10.32919 -10.13606 -9.87150 -9.75994 -8.64974 -8.40015 -8.32896 -7.61283 -6.41898 -4.12677 1.76888 2.33777 3.43075 3.48549 3.63724 3.74617 3.84885 4.04578 4.30705 4.39401 4.52641 4.58742 4.67975 4.85198 4.92752 4.93864 5.19708 5.31549 5.35148 5.36925 5.42977 5.43506 5.53875 5.58038 5.64536 5.67419 5.71079 5.80162 5.92317 5.97397 6.28999 6.36515 7.00268 7.10597 7.26160 7.41777 8.05563 8.37954 8.61351 8.81133 9.58402 10.99004 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.038645 B = 0.003644 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.373286 B = 7682.442729 C = 7956.451059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.017 4.017 3 C 0.082 3.918 4 N -0.686 5.686 5 C 0.068 3.932 6 C 0.018 3.982 7 H 0.098 0.902 8 C 0.252 3.748 9 N -0.471 5.471 10 C 0.018 3.982 11 C -0.605 4.605 12 H 0.051 0.949 13 C 0.020 3.980 14 N -0.910 5.910 15 Si 1.068 2.932 16 H -0.286 1.286 17 H -0.288 1.288 18 H -0.284 1.284 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.094 4.094 22 S -0.232 6.232 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.081 0.919 28 H 0.341 0.659 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.027 0.973 32 H 0.017 0.983 33 H 0.269 0.731 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 -18.812 -13.365 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 C -0.049 4.049 4 N -0.318 5.318 5 C -0.062 4.062 6 C -0.004 4.004 7 H 0.116 0.884 8 C -0.065 4.065 9 N -0.148 5.148 10 C -0.021 4.021 11 C -0.643 4.643 12 H 0.070 0.930 13 C -0.184 4.184 14 N -0.546 5.546 15 Si 0.897 3.103 16 H -0.213 1.213 17 H -0.214 1.214 18 H -0.209 1.209 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.242 4.242 22 S -0.004 6.004 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.160 0.840 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.341 -18.104 -9.744 20.692 hybrid contribution -0.955 -1.165 -2.927 3.292 sum -3.296 -19.269 -12.671 23.296 Atomic orbital electron populations 1.22056 0.92254 1.02659 1.02435 1.23287 0.98207 0.97313 0.93888 1.21950 1.01149 0.90772 0.90999 1.60461 1.19874 1.17559 1.33907 1.22061 1.01179 0.86848 0.96141 1.18999 0.98983 0.96154 0.86219 0.88365 1.28713 0.92970 0.91225 0.93567 1.80988 1.10290 1.11989 1.11524 1.19282 0.97061 0.87024 0.98683 1.22002 1.39448 0.97298 1.05548 0.93037 1.25791 0.94925 0.94650 1.03059 1.70779 1.34296 1.39429 1.10080 0.83541 0.76302 0.75714 0.74775 1.21302 1.21433 1.20939 1.22119 1.00008 0.96979 0.97073 1.22332 1.00655 0.97238 0.95865 1.24382 1.04083 0.98309 0.97448 1.88551 1.84716 1.10045 1.17083 0.92018 0.91966 0.91235 0.94160 0.90109 0.84037 0.93462 0.90486 0.95483 0.96479 0.92055 0.90961 0.90292 0.90519 0.90616 0.88057 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.17 37.16 0.30 -0.86 16 2 C -0.02 -0.16 0.95 -90.25 -0.09 -0.25 16 3 C 0.08 0.89 4.46 -3.83 -0.02 0.87 16 4 N -0.69 -9.16 5.68 -113.78 -0.65 -9.81 16 5 C 0.07 1.01 5.05 -3.82 -0.02 0.99 16 6 C 0.02 0.35 2.35 -93.41 -0.22 0.13 16 7 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 8 C 0.25 5.54 13.67 -20.76 -0.28 5.26 16 9 N -0.47 -11.30 18.54 42.16 0.78 -10.52 16 10 C 0.02 0.42 3.74 -27.88 -0.10 0.32 16 11 C -0.60 -16.51 8.60 -34.44 -0.30 -16.80 16 12 H 0.05 1.42 7.59 -52.48 -0.40 1.02 16 13 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 14 N -0.91 -26.98 13.65 55.43 0.76 -26.23 16 15 Si 1.07 25.33 29.90 -169.99 -5.08 20.25 16 16 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C -0.12 -0.93 5.74 -26.39 -0.15 -1.08 16 20 C -0.12 -0.89 6.34 -25.62 -0.16 -1.06 16 21 C -0.09 -0.81 7.52 38.30 0.29 -0.53 16 22 S -0.23 -2.93 21.62 -107.50 -2.32 -5.25 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.67 6.74 -51.93 -0.35 0.32 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 28 H 0.34 4.23 7.08 -39.30 -0.28 3.95 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.03 0.62 8.01 -51.93 -0.42 0.21 16 32 H 0.02 0.42 8.01 -51.93 -0.42 0.01 16 33 H 0.27 7.81 7.22 -40.82 -0.29 7.52 16 34 H 0.07 0.47 7.62 -51.93 -0.40 0.07 16 35 H 0.08 0.55 7.62 -51.93 -0.40 0.16 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -32.05 332.22 -8.74 -40.80 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.39 Total: -1.72 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -0.85 Total: -12.54 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.89 Total: -46.55 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.25 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.32 Total: -5.25 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.05 -8.74 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381459824.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.487 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds