Wall clock time and date at job start Mon Mar 30 2020 07:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 110.29907 * 2 1 4 4 N 1.46898 * 109.47257 * 65.72068 * 3 2 1 5 5 C 1.46901 * 111.00004 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47062 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47114 * 305.00018 * 6 5 4 8 8 C 1.47199 * 109.47168 * 65.00318 * 6 5 4 9 9 N 5.62770 * 105.20314 * 57.63432 * 2 1 3 10 10 C 1.52998 * 109.47071 * 185.00307 * 6 5 4 11 11 C 1.50706 * 109.47348 * 174.99997 * 10 6 5 12 12 H 1.08005 * 119.99758 * 359.97438 * 11 10 6 13 13 C 1.37871 * 120.00102 * 179.97438 * 11 10 6 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47483 * 269.99808 * 15 13 11 17 17 H 1.48499 * 109.47134 * 30.00322 * 15 13 11 18 18 H 1.48507 * 109.46904 * 150.00145 * 15 13 11 19 19 C 1.53707 * 110.42953 * 237.77235 * 2 1 3 20 20 C 1.52940 * 112.48787 * 238.25708 * 19 2 1 21 21 C 1.55151 * 108.96524 * 30.09723 * 20 19 2 22 22 S 1.83394 * 110.34142 * 122.17037 * 2 1 3 23 23 H 1.08998 * 109.47623 * 60.69845 * 1 2 3 24 24 H 1.09007 * 109.47000 * 180.70143 * 1 2 3 25 25 H 1.09001 * 109.47127 * 300.69829 * 1 2 3 26 26 H 1.09004 * 109.47536 * 305.71701 * 3 2 1 27 27 H 1.09007 * 109.47199 * 185.71681 * 3 2 1 28 28 H 1.00890 * 111.00032 * 303.94958 * 4 3 2 29 29 H 1.09001 * 109.46974 * 60.00309 * 5 4 3 30 30 H 1.08996 * 109.47333 * 300.00274 * 5 4 3 31 31 H 1.09001 * 109.47671 * 55.00206 * 10 6 5 32 32 H 1.09006 * 109.47297 * 294.99926 * 10 6 5 33 33 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 34 34 H 1.08998 * 108.88658 * 359.04772 * 19 2 1 35 35 H 1.08994 * 108.88895 * 117.45774 * 19 2 1 36 36 H 1.09007 * 109.59847 * 270.16454 * 20 19 2 37 37 H 1.09003 * 109.60431 * 150.03292 * 20 19 2 38 38 H 1.09000 * 111.13065 * 200.65495 * 21 20 19 39 39 H 1.08997 * 111.12870 * 76.46945 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0608 1.4350 0.0000 4 7 1.6966 2.0918 1.2625 5 6 2.1914 3.4745 1.2984 6 6 1.7930 4.1244 2.6250 7 1 0.7141 4.0453 2.7588 8 6 2.4766 3.4373 3.7328 9 7 3.0058 2.9072 4.5871 10 6 2.1985 5.5996 2.6121 11 6 1.6978 6.2692 3.8661 12 1 1.1453 5.6995 4.5986 13 6 1.9451 7.6089 4.0780 14 7 2.6175 8.3027 3.1857 15 14 1.3239 8.4388 5.6319 16 1 -0.0371 8.9827 5.3925 17 1 1.2736 7.4475 6.7364 18 1 2.2414 9.5463 6.0022 19 6 2.0665 -0.7681 -1.2185 20 6 2.9674 -1.9387 -0.8218 21 6 2.5080 -2.4841 0.5561 22 16 2.1675 -0.9156 1.4556 23 1 -0.3634 0.5029 -0.8961 24 1 -0.3633 -1.0277 0.0126 25 1 -0.3633 0.5246 0.8837 26 1 1.6242 1.9840 -0.8344 27 1 3.1459 1.4210 -0.1024 28 1 0.6993 2.0605 1.4118 29 1 1.7560 4.0378 0.4731 30 1 3.2774 3.4743 1.2051 31 1 1.7632 6.0886 1.7407 32 1 3.2848 5.6776 2.5677 33 1 2.9397 7.8718 2.3787 34 1 1.2234 -1.1509 -1.7935 35 1 2.6353 -0.0819 -1.8458 36 1 4.0007 -1.5983 -0.7544 37 1 2.8932 -2.7273 -1.5706 38 1 3.3042 -3.0497 1.0401 39 1 1.6041 -3.0855 0.4591 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381459824.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:33 Heat of formation + Delta-G solvation = -19.446325 kcal Electronic energy + Delta-G solvation = -18004.775256 eV Core-core repulsion = 15264.555281 eV Total energy + Delta-G solvation = -2740.219976 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.29417 -38.15834 -36.28470 -35.63273 -33.74329 -31.95928 -28.36367 -27.86707 -26.11412 -24.30711 -23.71749 -22.80543 -20.92616 -19.16452 -18.53551 -17.39606 -16.61373 -16.16179 -15.92133 -15.80150 -15.55425 -15.13022 -14.88977 -14.75139 -14.13786 -14.04749 -13.84002 -13.72265 -13.44119 -13.32943 -13.16492 -12.84229 -12.49474 -12.41620 -12.27177 -12.14920 -11.98855 -11.90689 -11.80027 -11.65282 -11.44537 -10.67263 -10.56106 -10.52341 -9.33157 -8.64392 -8.57010 -6.35117 0.99346 1.52808 1.59442 1.60954 1.78106 1.99654 2.07374 2.55652 3.08059 3.18155 3.27643 3.63535 3.70363 3.90531 3.99777 4.10655 4.19871 4.27188 4.36082 4.54520 4.61942 4.64046 4.68349 4.71411 4.80862 4.82455 4.86664 4.95423 5.01270 5.07392 5.19399 5.21817 5.31004 5.38291 5.89468 6.03161 6.20733 6.43927 6.62556 6.84574 7.42318 8.77910 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.038645 B = 0.003644 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.373286 B = 7682.442729 C = 7956.451059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.002 3.998 3 C 0.082 3.918 4 N -0.699 5.699 5 C 0.082 3.918 6 C 0.027 3.973 7 H 0.116 0.884 8 C 0.262 3.738 9 N -0.512 5.512 10 C 0.022 3.978 11 C -0.616 4.616 12 H 0.044 0.956 13 C -0.030 4.030 14 N -0.935 5.935 15 Si 1.108 2.892 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.285 1.285 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.073 4.073 22 S -0.336 6.336 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.347 0.653 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.034 0.966 32 H -0.004 1.004 33 H 0.262 0.738 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 -19.706 -15.178 25.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.108 4.108 3 C -0.048 4.048 4 N -0.332 5.332 5 C -0.048 4.048 6 C 0.005 3.995 7 H 0.134 0.866 8 C -0.054 4.054 9 N -0.189 5.189 10 C -0.016 4.016 11 C -0.654 4.654 12 H 0.062 0.938 13 C -0.228 4.228 14 N -0.573 5.573 15 Si 0.931 3.069 16 H -0.190 1.190 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.161 4.161 20 C -0.158 4.158 21 C -0.221 4.221 22 S -0.109 6.109 23 H 0.101 0.899 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.167 0.833 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.014 0.986 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.634 -19.019 -11.577 22.560 hybrid contribution -0.546 -0.958 -2.390 2.632 sum -4.180 -19.977 -13.967 24.731 Atomic orbital electron populations 1.22035 0.91277 1.03083 1.02743 1.23328 0.98722 0.96131 0.92577 1.21997 1.00766 0.91573 0.90440 1.60372 1.20416 1.16430 1.35952 1.21837 1.00788 0.88030 0.94172 1.19035 0.99550 0.93490 0.87386 0.86625 1.29354 0.92174 0.90510 0.93374 1.80982 1.11667 1.13347 1.12915 1.19146 0.95515 0.89659 0.97313 1.22395 1.38767 0.97507 1.06686 0.93796 1.27056 0.94755 0.95962 1.05067 1.70881 1.36001 1.39788 1.10600 0.83021 0.76919 0.75051 0.71914 1.18952 1.20915 1.21038 1.22150 1.00832 0.97019 0.96082 1.22338 1.00082 0.97869 0.95478 1.24424 1.04692 0.95770 0.97241 1.88867 1.85564 1.14621 1.21818 0.89932 0.91515 0.92582 0.91797 0.91201 0.83347 0.91078 0.91462 0.94760 0.98601 0.92859 0.89052 0.89396 0.91338 0.88045 0.87885 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.17 71.98 0.59 -1.38 16 2 C 0.00 0.04 0.95 -10.56 -0.01 0.03 16 3 C 0.08 1.63 4.46 86.30 0.39 2.01 16 4 N -0.70 -17.75 5.68 -513.88 -2.92 -20.67 16 5 C 0.08 2.32 5.05 86.30 0.44 2.76 16 6 C 0.03 1.01 2.35 -12.60 -0.03 0.98 16 7 H 0.12 3.92 8.14 -2.38 -0.02 3.90 16 8 C 0.26 11.56 13.67 89.44 1.22 12.78 16 9 N -0.51 -24.90 18.54 20.01 0.37 -24.53 16 10 C 0.02 1.04 3.74 29.85 0.11 1.15 16 11 C -0.62 -33.53 8.60 25.60 0.22 -33.30 16 12 H 0.04 2.41 7.59 -2.91 -0.02 2.39 16 13 C -0.03 -1.67 5.46 84.65 0.46 -1.21 16 14 N -0.94 -55.68 13.65 21.45 0.29 -55.38 16 15 Si 1.11 50.56 29.90 68.60 2.05 52.61 16 16 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 19 C -0.12 -1.47 5.74 30.81 0.18 -1.29 16 20 C -0.12 -1.43 6.34 31.31 0.20 -1.23 16 21 C -0.07 -1.16 7.52 72.72 0.55 -0.61 16 22 S -0.34 -8.42 21.62 -56.49 -1.22 -9.65 16 23 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.06 0.99 6.74 -2.39 -0.02 0.97 16 26 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.35 8.06 7.08 -89.70 -0.64 7.43 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.03 1.55 8.01 -2.39 -0.02 1.53 16 32 H 0.00 -0.22 8.01 -2.38 -0.02 -0.24 16 33 H 0.26 15.38 7.22 -92.71 -0.67 14.71 16 34 H 0.09 0.79 7.62 -2.39 -0.02 0.78 16 35 H 0.09 0.94 7.62 -2.39 -0.02 0.92 16 36 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -69.94 332.22 3.37 -66.56 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.49 Total: 10.36 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 4.31 Total: -19.31 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -2.25 Total: -100.58 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.05 Total: 52.61 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.22 Total: -9.65 kcal Total: -69.94 3.37 -66.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381459824.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.117 kcal (2) G-P(sol) polarization free energy of solvation -69.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds