Wall clock time and date at job start Mon Mar 30 2020 07:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 S 1.76205 * 126.03524 * 2 1 4 4 C 1.70977 * 90.27909 * 180.17334 * 3 2 1 5 5 N 1.29020 * 110.17205 * 359.84330 * 4 3 2 6 6 C 1.31787 * 117.12361 * 359.97438 * 5 4 3 7 7 C 1.50697 * 122.74972 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47066 * 90.02877 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46923 * 299.99733 * 10 9 8 12 12 C 1.52999 * 109.46998 * 59.99872 * 10 9 8 13 13 C 1.52996 * 109.46700 * 179.97438 * 10 9 8 14 14 C 1.50701 * 109.46820 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00070 * 0.02562 * 14 13 10 16 16 C 1.37878 * 120.00019 * 179.97438 * 14 13 10 17 17 N 1.31515 * 120.00228 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00068 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46685 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46910 * 120.00333 * 18 16 14 21 21 H 1.48502 * 109.47120 * 240.00671 * 18 16 14 22 22 H 1.09003 * 109.47329 * 270.11547 * 1 2 3 23 23 H 1.09003 * 109.47465 * 30.12141 * 1 2 3 24 24 H 1.09003 * 109.46911 * 150.11689 * 1 2 3 25 25 H 1.08002 * 124.91509 * 179.84036 * 4 3 2 26 26 H 1.09001 * 109.47558 * 330.03040 * 7 6 5 27 27 H 1.08998 * 109.47216 * 210.02702 * 7 6 5 28 28 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 29 29 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 30 30 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 31 31 H 1.09002 * 109.47301 * 60.00027 * 11 10 9 32 32 H 1.09001 * 109.47017 * 180.02562 * 11 10 9 33 33 H 1.09005 * 109.47249 * 300.00302 * 11 10 9 34 34 H 1.09001 * 109.46999 * 60.00126 * 12 10 9 35 35 H 1.09001 * 109.46478 * 179.97438 * 12 10 9 36 36 H 1.08993 * 109.47197 * 299.99817 * 12 10 9 37 37 H 1.08993 * 109.47740 * 299.99810 * 13 10 9 38 38 H 1.09005 * 109.47573 * 59.99976 * 13 10 9 39 39 H 0.97002 * 120.00555 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5435 1.4249 0.0000 4 6 3.9310 0.4258 -0.0052 5 7 3.5844 -0.8170 -0.0032 6 6 2.2932 -1.0806 0.0026 7 6 1.7480 -2.4855 0.0050 8 7 1.5765 -2.9419 1.3907 9 6 1.0460 -4.3111 1.4322 10 6 0.8808 -4.7502 2.8885 11 6 2.2393 -4.7082 3.5910 12 6 -0.0903 -3.8052 3.5991 13 6 0.3276 -6.1760 2.9316 14 6 0.1655 -6.6087 4.3661 15 1 0.4302 -5.9340 5.1668 16 6 -0.3216 -7.8655 4.6562 17 7 -0.6443 -8.6869 3.6811 18 14 -0.5232 -8.4016 6.4343 19 1 -0.0933 -7.3018 7.3346 20 1 -1.9488 -8.7256 6.6949 21 1 0.3117 -9.6035 6.6866 22 1 -0.3634 0.0021 1.0277 23 1 -0.3634 0.8889 -0.5157 24 1 -0.3633 -0.8911 -0.5120 25 1 4.9501 0.7833 -0.0095 26 1 2.4441 -3.1463 -0.5117 27 1 0.7847 -2.5023 -0.5049 28 1 0.9860 -2.3091 1.9094 29 1 0.0779 -4.3410 0.9321 30 1 1.7375 -4.9842 0.9256 31 1 2.6331 -3.6922 3.5602 32 1 2.1218 -5.0214 4.6284 33 1 2.9312 -5.3814 3.0847 34 1 -1.0581 -3.8352 3.0985 35 1 -0.2082 -4.1183 4.6364 36 1 0.3034 -2.7893 3.5683 37 1 -0.6402 -6.2056 2.4313 38 1 1.0191 -6.8495 2.4253 39 1 -0.9867 -9.5713 3.8851 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381538570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:44 Heat of formation + Delta-G solvation = 25.064632 kcal Electronic energy + Delta-G solvation = -18259.911404 eV Core-core repulsion = 15521.621568 eV Total energy + Delta-G solvation = -2738.289836 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.06712 -37.55320 -34.55599 -32.75273 -31.94389 -28.53132 -26.89927 -26.30443 -25.66363 -24.44247 -23.82945 -22.06846 -19.11422 -18.35406 -17.69517 -16.21561 -15.78476 -15.43359 -15.10012 -14.57124 -13.99957 -13.87958 -13.49927 -13.15292 -13.09949 -12.96708 -12.75379 -12.47011 -12.12017 -11.97355 -11.68137 -11.12445 -10.96336 -10.84901 -10.73177 -10.47309 -10.24960 -10.09478 -9.72284 -9.66159 -9.37357 -9.07808 -8.88867 -8.77734 -8.30080 -8.07122 -5.94481 -3.94354 0.56414 1.19951 1.57177 2.67750 3.33792 3.41639 3.45326 4.09140 4.48876 4.61814 4.74024 4.91393 5.00107 5.23474 5.32710 5.41502 5.60353 5.63369 5.64854 5.77325 5.85493 6.00647 6.07817 6.25250 6.35741 6.53027 6.70330 6.81229 6.86377 7.22711 7.23354 7.29722 7.39690 7.63563 7.69341 7.73375 7.88035 8.06092 8.50702 9.11259 9.68431 11.17242 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.042478 B = 0.003448 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.009540 B = 8118.792782 C = 8163.094990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.215 4.215 3 S 0.098 5.902 4 C 0.017 3.983 5 N -0.448 5.448 6 C 0.071 3.929 7 C 0.131 3.869 8 N -0.677 5.677 9 C 0.071 3.929 10 C -0.058 4.058 11 C -0.116 4.116 12 C -0.129 4.129 13 C 0.034 3.966 14 C -0.505 4.505 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.285 1.285 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.198 0.802 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.338 0.662 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.032 0.968 37 H 0.013 0.987 38 H 0.015 0.985 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 20.227 -8.908 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.336 4.336 3 S 0.351 5.649 4 C -0.281 4.281 5 N -0.160 5.160 6 C -0.061 4.061 7 C -0.001 4.001 8 N -0.310 5.310 9 C -0.058 4.058 10 C -0.058 4.058 11 C -0.173 4.173 12 C -0.186 4.186 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.078 0.922 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.211 1.211 22 H 0.098 0.902 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.214 0.786 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.157 0.843 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.878 20.526 -8.878 22.890 hybrid contribution -1.203 -1.059 0.677 1.740 sum 3.675 19.468 -8.201 21.442 Atomic orbital electron populations 1.20294 0.86787 1.03393 1.03267 1.25762 1.01528 0.94510 1.11839 1.83907 0.99968 1.12061 1.68973 1.28291 1.03665 0.91060 1.05117 1.66122 1.17394 1.18810 1.13697 1.20167 0.87080 0.96713 1.02098 1.20412 0.98705 0.89066 0.91913 1.60527 1.55442 1.04345 1.10640 1.22144 0.96903 0.87971 0.98759 1.20626 0.95690 0.98230 0.91258 1.21597 0.95751 0.99570 1.00416 1.21771 0.98026 0.96800 1.02026 1.19128 0.95589 0.88554 0.97124 1.21281 1.41742 0.98950 0.92412 0.92242 1.25016 0.95910 0.96914 0.96777 1.69975 1.44916 1.07791 1.31096 0.86614 0.77586 0.78624 0.85655 1.19776 1.21212 1.21149 0.90229 0.91072 0.90098 0.78583 0.89490 0.93802 0.84345 0.95726 0.91314 0.93925 0.92731 0.94115 0.94077 0.91682 0.94932 0.96891 0.96624 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.10 36.00 0.36 -0.29 16 2 C -0.21 -2.31 6.59 -35.92 -0.24 -2.54 16 3 S 0.10 0.88 23.22 -107.50 -2.50 -1.62 16 4 C 0.02 0.18 12.23 51.58 0.63 0.81 16 5 N -0.45 -6.09 10.53 -11.90 -0.13 -6.22 16 6 C 0.07 0.93 6.25 -84.23 -0.53 0.40 16 7 C 0.13 1.75 5.87 -4.97 -0.03 1.72 16 8 N -0.68 -10.32 5.70 -115.05 -0.66 -10.97 16 9 C 0.07 1.23 4.65 -3.82 -0.02 1.21 16 10 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 11 C -0.12 -2.33 8.06 37.16 0.30 -2.03 16 12 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 13 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 14 C -0.51 -13.90 7.65 -34.44 -0.26 -14.17 16 15 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 0.66 6.76 -51.93 -0.35 0.31 16 25 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 26 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.04 0.52 6.71 -51.93 -0.35 0.17 16 28 H 0.34 4.92 6.76 -39.29 -0.27 4.66 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 32 H 0.05 1.16 6.62 -51.93 -0.34 0.82 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 36 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 325.95 15.07 4.91 4.91 Total: -1.00 -30.97 325.95 -8.49 -39.46 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.05 Total: 0.04 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 0.21 Total: -16.08 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.04 Total: -43.40 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.50 Total: -1.62 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.97 -8.49 -39.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381538570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.527 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds