Wall clock time and date at job start Mon Mar 30 2020 07:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 S 1.76205 * 126.03524 * 2 1 4 4 C 1.70977 * 90.27909 * 180.17334 * 3 2 1 5 5 N 1.29020 * 110.17205 * 359.84330 * 4 3 2 6 6 C 1.31787 * 117.12361 * 359.97438 * 5 4 3 7 7 C 1.50697 * 122.74972 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47066 * 90.02877 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46923 * 299.99733 * 10 9 8 12 12 C 1.52999 * 109.46998 * 59.99872 * 10 9 8 13 13 C 1.52996 * 109.46700 * 179.97438 * 10 9 8 14 14 C 1.50701 * 109.46820 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00070 * 0.02562 * 14 13 10 16 16 C 1.37878 * 120.00019 * 179.97438 * 14 13 10 17 17 N 1.31515 * 120.00228 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00068 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46685 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46910 * 120.00333 * 18 16 14 21 21 H 1.48502 * 109.47120 * 240.00671 * 18 16 14 22 22 H 1.09003 * 109.47329 * 270.11547 * 1 2 3 23 23 H 1.09003 * 109.47465 * 30.12141 * 1 2 3 24 24 H 1.09003 * 109.46911 * 150.11689 * 1 2 3 25 25 H 1.08002 * 124.91509 * 179.84036 * 4 3 2 26 26 H 1.09001 * 109.47558 * 330.03040 * 7 6 5 27 27 H 1.08998 * 109.47216 * 210.02702 * 7 6 5 28 28 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 29 29 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 30 30 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 31 31 H 1.09002 * 109.47301 * 60.00027 * 11 10 9 32 32 H 1.09001 * 109.47017 * 180.02562 * 11 10 9 33 33 H 1.09005 * 109.47249 * 300.00302 * 11 10 9 34 34 H 1.09001 * 109.46999 * 60.00126 * 12 10 9 35 35 H 1.09001 * 109.46478 * 179.97438 * 12 10 9 36 36 H 1.08993 * 109.47197 * 299.99817 * 12 10 9 37 37 H 1.08993 * 109.47740 * 299.99810 * 13 10 9 38 38 H 1.09005 * 109.47573 * 59.99976 * 13 10 9 39 39 H 0.97002 * 120.00555 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5435 1.4249 0.0000 4 6 3.9310 0.4258 -0.0052 5 7 3.5844 -0.8170 -0.0032 6 6 2.2932 -1.0806 0.0026 7 6 1.7480 -2.4855 0.0050 8 7 1.5765 -2.9419 1.3907 9 6 1.0460 -4.3111 1.4322 10 6 0.8808 -4.7502 2.8885 11 6 2.2393 -4.7082 3.5910 12 6 -0.0903 -3.8052 3.5991 13 6 0.3276 -6.1760 2.9316 14 6 0.1655 -6.6087 4.3661 15 1 0.4302 -5.9340 5.1668 16 6 -0.3216 -7.8655 4.6562 17 7 -0.6443 -8.6869 3.6811 18 14 -0.5232 -8.4016 6.4343 19 1 -0.0933 -7.3018 7.3346 20 1 -1.9488 -8.7256 6.6949 21 1 0.3117 -9.6035 6.6866 22 1 -0.3634 0.0021 1.0277 23 1 -0.3634 0.8889 -0.5157 24 1 -0.3633 -0.8911 -0.5120 25 1 4.9501 0.7833 -0.0095 26 1 2.4441 -3.1463 -0.5117 27 1 0.7847 -2.5023 -0.5049 28 1 0.9860 -2.3091 1.9094 29 1 0.0779 -4.3410 0.9321 30 1 1.7375 -4.9842 0.9256 31 1 2.6331 -3.6922 3.5602 32 1 2.1218 -5.0214 4.6284 33 1 2.9312 -5.3814 3.0847 34 1 -1.0581 -3.8352 3.0985 35 1 -0.2082 -4.1183 4.6364 36 1 0.3034 -2.7893 3.5683 37 1 -0.6402 -6.2056 2.4313 38 1 1.0191 -6.8495 2.4253 39 1 -0.9867 -9.5713 3.8851 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381538570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:44 Heat of formation + Delta-G solvation = 5.398689 kcal Electronic energy + Delta-G solvation = -18260.764183 eV Core-core repulsion = 15521.621568 eV Total energy + Delta-G solvation = -2739.142615 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.92876 -39.09260 -35.93100 -34.35056 -33.24461 -29.70631 -28.70549 -27.90221 -26.91510 -25.57614 -24.97735 -23.74180 -20.13132 -19.37777 -18.99005 -18.32441 -16.73085 -16.62486 -16.42956 -16.11371 -15.46536 -15.12849 -14.69697 -14.35898 -14.15507 -13.98763 -13.87017 -13.79615 -13.62745 -13.34554 -13.10788 -12.79637 -12.67020 -12.41350 -12.26252 -12.15262 -11.96339 -11.85151 -11.38589 -10.87194 -10.76207 -10.51921 -10.50151 -10.11866 -9.73049 -9.28467 -8.13238 -6.20000 -0.20617 0.46907 0.80229 1.40522 1.41747 1.53823 1.80046 2.44520 3.20796 3.26270 3.49141 3.95122 4.11033 4.14112 4.22556 4.29365 4.38006 4.42748 4.63986 4.72143 4.77609 4.80393 4.94277 4.96162 4.99277 5.07407 5.20692 5.21000 5.26189 5.51804 5.54251 5.58008 5.64670 5.87408 5.93345 6.03101 6.37633 6.48526 6.87172 6.95153 7.47263 8.99302 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.042478 B = 0.003448 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.009540 B = 8118.792782 C = 8163.094990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.220 4.220 3 S 0.154 5.846 4 C 0.009 3.991 5 N -0.492 5.492 6 C 0.045 3.955 7 C 0.134 3.866 8 N -0.678 5.678 9 C 0.084 3.916 10 C -0.054 4.054 11 C -0.106 4.106 12 C -0.121 4.121 13 C 0.040 3.960 14 C -0.513 4.513 15 H 0.065 0.935 16 C -0.004 4.004 17 N -0.938 5.938 18 Si 0.956 3.044 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.283 1.283 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.224 0.776 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.344 0.656 29 H 0.027 0.973 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.028 0.972 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.063 0.937 37 H -0.012 1.012 38 H -0.017 1.017 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.894 22.761 -8.289 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.342 4.342 3 S 0.407 5.593 4 C -0.289 4.289 5 N -0.205 5.205 6 C -0.087 4.087 7 C 0.003 3.997 8 N -0.310 5.310 9 C -0.045 4.045 10 C -0.055 4.055 11 C -0.164 4.164 12 C -0.178 4.178 13 C 0.003 3.997 14 C -0.551 4.551 15 H 0.083 0.917 16 C -0.201 4.201 17 N -0.579 5.579 18 Si 0.781 3.219 19 H -0.185 1.185 20 H -0.207 1.207 21 H -0.209 1.209 22 H 0.104 0.896 23 H 0.107 0.893 24 H 0.099 0.901 25 H 0.240 0.760 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.163 0.837 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.007 0.993 38 H 0.002 0.998 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.804 23.092 -8.257 24.990 hybrid contribution -1.149 -1.746 0.418 2.132 sum 3.655 21.345 -7.839 23.031 Atomic orbital electron populations 1.20401 0.85306 1.04338 1.03889 1.26103 1.02790 0.95030 1.10259 1.83706 0.98118 1.10004 1.67459 1.28786 1.05580 0.90632 1.03896 1.66104 1.18074 1.20734 1.15612 1.20051 0.87503 0.96686 1.04461 1.20332 0.99166 0.89646 0.90543 1.60420 1.55189 1.03107 1.12330 1.21835 0.96879 0.89333 0.96500 1.20488 0.95894 0.95543 0.93549 1.21492 0.95441 1.00275 0.99152 1.21670 0.97807 0.97881 1.00469 1.19002 0.93711 0.91396 0.95611 1.21647 1.40899 0.99095 0.93484 0.91680 1.25908 0.95790 0.97183 1.01184 1.70112 1.46108 1.08252 1.33437 0.85533 0.77603 0.78307 0.80444 1.18532 1.20685 1.20938 0.89639 0.89266 0.90100 0.75972 0.91023 0.92255 0.83660 0.95444 0.92623 0.92041 0.94191 0.95290 0.93869 0.93454 0.91817 0.99340 0.99840 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.10 71.23 0.72 -0.42 16 2 C -0.22 -4.22 6.59 24.64 0.16 -4.06 16 3 S 0.15 2.31 23.22 -56.49 -1.31 1.00 16 4 C 0.01 0.16 12.23 130.66 1.60 1.76 16 5 N -0.49 -12.85 10.53 -191.55 -2.02 -14.86 16 6 C 0.04 1.10 6.25 41.52 0.26 1.36 16 7 C 0.13 3.51 5.87 85.55 0.50 4.01 16 8 N -0.68 -19.92 5.70 -517.92 -2.95 -22.88 16 9 C 0.08 2.91 4.65 86.30 0.40 3.31 16 10 C -0.05 -2.19 0.60 -52.18 -0.03 -2.23 16 11 C -0.11 -4.25 8.06 71.98 0.58 -3.67 16 12 C -0.12 -4.36 7.89 71.98 0.57 -3.79 16 13 C 0.04 2.11 4.04 29.85 0.12 2.23 16 14 C -0.51 -28.61 7.65 25.60 0.20 -28.42 16 15 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 16 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 17 N -0.94 -57.57 13.29 21.45 0.28 -57.29 16 18 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.08 1.15 6.76 -2.39 -0.02 1.13 16 25 H 0.22 2.49 8.06 -2.91 -0.02 2.47 16 26 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.06 1.34 6.71 -2.39 -0.02 1.33 16 28 H 0.34 9.30 6.76 -89.69 -0.61 8.69 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 2.21 7.60 -2.39 -0.02 2.19 16 32 H 0.04 1.68 6.62 -2.39 -0.02 1.67 16 33 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.86 6.62 -2.39 -0.02 1.85 16 36 H 0.06 1.89 6.57 -2.39 -0.02 1.87 16 37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 39 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -67.47 325.95 2.00 -65.47 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.43 Total: 11.47 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 5.54 Total: -29.68 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -4.68 Total: -95.03 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.31 Total: 1.00 kcal Total: -67.47 2.00 -65.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381538570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.866 kcal (2) G-P(sol) polarization free energy of solvation -67.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds