Wall clock time and date at job start Mon Mar 30 2020 07:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40230 * 119.97787 * 217.22305 * 3 2 1 5 5 C 1.36333 * 120.66373 * 180.25057 * 4 3 2 6 6 C 1.39351 * 120.24709 * 359.83271 * 5 4 3 7 7 C 1.40837 * 119.64694 * 359.97438 * 6 5 4 8 8 C 1.46568 * 106.03504 * 179.97438 * 7 6 5 9 9 C 1.34195 * 106.93477 * 359.97438 * 8 7 6 10 10 N 1.36843 * 109.95929 * 359.97438 * 9 8 7 11 11 C 1.46502 * 125.01863 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47481 * 264.95973 * 11 10 9 13 13 C 1.52991 * 109.47390 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.47390 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47196 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99784 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00083 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00170 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46746 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47414 * 119.99409 * 19 17 15 22 22 H 1.48500 * 109.47137 * 240.00031 * 19 17 15 23 23 C 1.39170 * 119.98047 * 37.05794 * 3 2 1 24 24 H 1.08002 * 119.67274 * 0.06347 * 4 3 2 25 25 H 1.07999 * 119.88138 * 179.81270 * 5 4 3 26 26 H 1.08005 * 126.53211 * 179.97438 * 8 7 6 27 27 H 1.08006 * 125.02286 * 180.02562 * 9 8 7 28 28 H 1.09004 * 109.47214 * 24.96260 * 11 10 9 29 29 H 1.09002 * 109.46801 * 144.96085 * 11 10 9 30 30 H 1.09000 * 109.46682 * 300.00156 * 12 11 10 31 31 H 1.09001 * 109.46827 * 59.99480 * 12 11 10 32 32 H 1.09004 * 109.47267 * 300.00263 * 13 12 11 33 33 H 1.09008 * 109.47271 * 60.00235 * 13 12 11 34 34 H 1.09000 * 109.46682 * 300.00166 * 14 13 12 35 35 H 1.08996 * 109.47117 * 59.99841 * 14 13 12 36 36 H 0.96994 * 119.99675 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.30996 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2683 0.9682 0.7348 5 6 4.6315 0.9849 0.7406 6 6 5.3483 0.0345 0.0161 7 6 4.6569 -0.9451 -0.7228 8 6 5.6854 -1.7741 -1.3578 9 6 6.8743 -1.2744 -0.9867 10 7 6.6916 -0.1939 -0.1671 11 6 7.7685 0.6015 0.4280 12 6 8.0651 0.0850 1.8373 13 6 9.1901 0.9152 2.4585 14 6 9.4872 0.3982 3.8675 15 6 10.5949 1.2164 4.4796 16 1 11.0425 2.0241 3.9195 17 6 11.0376 0.9332 5.7543 18 7 10.4928 -0.0507 6.4362 19 14 12.4111 1.9469 6.5128 20 1 12.8507 2.9858 5.5471 21 1 11.9182 2.5995 7.7523 22 1 13.5566 1.0609 6.8416 23 6 3.2639 -0.9611 -0.7265 24 1 2.7223 1.7095 1.2994 25 1 5.1580 1.7377 1.3085 26 1 5.5183 -2.6249 -2.0017 27 1 7.8337 -1.6666 -1.2906 28 1 8.6649 0.5167 -0.1863 29 1 7.4618 1.6462 0.4810 30 1 7.1687 0.1698 2.4515 31 1 8.3717 -0.9597 1.7842 32 1 10.0864 0.8300 1.8440 33 1 8.8839 1.9600 2.5115 34 1 8.5910 0.4831 4.4821 35 1 9.7935 -0.6465 3.8142 36 1 10.8040 -0.2496 7.3330 37 1 2.7290 -1.7101 -1.2914 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385343721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:17 Heat of formation + Delta-G solvation = 66.363927 kcal Electronic energy + Delta-G solvation = -18409.497717 eV Core-core repulsion = 15537.554802 eV Total energy + Delta-G solvation = -2871.942915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52950 -38.02536 -36.14233 -35.29451 -33.23270 -31.95273 -30.60631 -29.32996 -28.09216 -25.22015 -23.54179 -22.48485 -22.08330 -20.33418 -20.21897 -18.62443 -17.12833 -16.37335 -16.33455 -15.06595 -14.97442 -14.72031 -14.49875 -14.12113 -13.90761 -13.79609 -13.35148 -12.89325 -12.79661 -12.73943 -12.48382 -12.24472 -12.10454 -11.84280 -11.26240 -11.13831 -11.06437 -10.77004 -10.68675 -10.56249 -9.91792 -9.82438 -9.43100 -9.13321 -8.41714 -8.36556 -7.82129 -6.06171 -4.09282 0.73400 1.09150 2.57858 2.59035 2.71539 2.92194 3.26388 3.34264 3.37536 3.82055 3.83993 4.39975 4.46732 4.61630 4.69243 4.83463 5.08627 5.12367 5.27366 5.29858 5.37459 5.43796 5.46347 5.64813 5.79723 5.83965 5.94530 6.09638 6.20349 6.23113 6.46550 6.54881 6.57029 6.71012 6.97783 7.02119 7.16773 7.42182 7.59682 7.72162 7.93048 8.34600 8.98211 9.55479 11.05069 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026704 B = 0.003140 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.285964 B = 8913.723031 C = 9561.907425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.267 3.733 3 C -0.070 4.070 4 C -0.059 4.059 5 C -0.121 4.121 6 C 0.126 3.874 7 C -0.120 4.120 8 C -0.203 4.203 9 C 0.059 3.941 10 N -0.472 5.472 11 C 0.103 3.897 12 C -0.135 4.135 13 C -0.107 4.107 14 C 0.021 3.979 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.011 4.011 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.149 0.851 27 H 0.170 0.830 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.056 -0.988 -16.310 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.048 4.048 3 C -0.075 4.075 4 C -0.081 4.081 5 C -0.141 4.141 6 C 0.016 3.984 7 C -0.125 4.125 8 C -0.227 4.227 9 C -0.067 4.067 10 N -0.152 5.152 11 C -0.017 4.017 12 C -0.173 4.173 13 C -0.146 4.146 14 C -0.016 4.016 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.032 4.032 24 H 0.151 0.849 25 H 0.149 0.851 26 H 0.167 0.833 27 H 0.188 0.812 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.499 -0.899 -16.024 19.178 hybrid contribution 1.350 0.436 0.632 1.553 sum -9.148 -0.464 -15.392 17.912 Atomic orbital electron populations 1.81237 1.12175 1.08598 1.09340 1.25707 0.92597 0.93294 0.93168 1.15646 0.84000 1.01391 1.06421 1.20419 0.93071 0.97170 0.97416 1.19739 0.93219 0.99458 1.01682 1.18469 0.83546 0.97450 0.98925 1.19033 0.92560 0.98381 1.02476 1.21650 0.90222 1.03385 1.07446 1.21936 0.99944 0.89599 0.95198 1.44343 1.04508 1.26106 1.40270 1.22148 0.88492 0.95076 0.96004 1.22090 1.00922 1.01065 0.93209 1.21588 0.95219 0.98156 0.99604 1.19084 0.96669 0.96415 0.89392 1.21276 1.18778 1.16252 0.99770 0.92643 1.25038 0.96875 0.95281 0.97300 1.69973 1.42221 1.29519 1.11659 0.86547 0.82051 0.80226 0.79247 1.19741 1.20966 1.20989 1.20485 0.91811 0.95683 0.95238 0.84946 0.85100 0.83345 0.81235 0.89044 0.89494 0.91660 0.91686 0.93127 0.93100 0.96597 0.96638 0.92991 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.96 18.54 41.84 0.78 -5.18 16 2 C 0.27 3.07 15.32 -22.47 -0.34 2.73 16 3 C -0.07 -0.71 5.73 -106.88 -0.61 -1.32 16 4 C -0.06 -0.57 9.66 -39.52 -0.38 -0.96 16 5 C -0.12 -1.26 9.90 -39.85 -0.39 -1.66 16 6 C 0.13 1.45 6.81 -83.93 -0.57 0.88 16 7 C -0.12 -1.30 6.36 -105.16 -0.67 -1.97 16 8 C -0.20 -1.93 11.09 -37.65 -0.42 -2.35 16 9 C 0.06 0.56 11.27 -16.74 -0.19 0.37 16 10 N -0.47 -5.22 2.77 -114.36 -0.32 -5.54 16 11 C 0.10 1.13 5.99 -4.04 -0.02 1.10 16 12 C -0.13 -1.95 5.54 -26.73 -0.15 -2.09 16 13 C -0.11 -1.94 5.15 -26.73 -0.14 -2.08 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 19 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.01 -0.11 9.81 -38.84 -0.38 -0.49 16 24 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 25 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 26 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 27 H 0.17 1.16 8.06 -52.48 -0.42 0.73 16 28 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 329.08 15.07 4.96 4.96 Total: -1.00 -31.35 329.08 -8.72 -40.07 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -5.04 Total: -4.15 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -4.82 Total: -20.57 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 1.19 Total: -36.42 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.35 -8.72 -40.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385343721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.434 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds