Wall clock time and date at job start Mon Mar 30 2020 07:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40230 * 119.97787 * 217.22305 * 3 2 1 5 5 C 1.36333 * 120.66373 * 180.25057 * 4 3 2 6 6 C 1.39351 * 120.24709 * 359.83271 * 5 4 3 7 7 C 1.40837 * 119.64694 * 359.97438 * 6 5 4 8 8 C 1.46568 * 106.03504 * 179.97438 * 7 6 5 9 9 C 1.34195 * 106.93477 * 359.97438 * 8 7 6 10 10 N 1.36843 * 109.95929 * 359.97438 * 9 8 7 11 11 C 1.46502 * 125.01863 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47481 * 264.95973 * 11 10 9 13 13 C 1.52991 * 109.47390 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.47390 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47196 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99784 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00083 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00170 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46746 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47414 * 119.99409 * 19 17 15 22 22 H 1.48500 * 109.47137 * 240.00031 * 19 17 15 23 23 C 1.39170 * 119.98047 * 37.05794 * 3 2 1 24 24 H 1.08002 * 119.67274 * 0.06347 * 4 3 2 25 25 H 1.07999 * 119.88138 * 179.81270 * 5 4 3 26 26 H 1.08005 * 126.53211 * 179.97438 * 8 7 6 27 27 H 1.08006 * 125.02286 * 180.02562 * 9 8 7 28 28 H 1.09004 * 109.47214 * 24.96260 * 11 10 9 29 29 H 1.09002 * 109.46801 * 144.96085 * 11 10 9 30 30 H 1.09000 * 109.46682 * 300.00156 * 12 11 10 31 31 H 1.09001 * 109.46827 * 59.99480 * 12 11 10 32 32 H 1.09004 * 109.47267 * 300.00263 * 13 12 11 33 33 H 1.09008 * 109.47271 * 60.00235 * 13 12 11 34 34 H 1.09000 * 109.46682 * 300.00166 * 14 13 12 35 35 H 1.08996 * 109.47117 * 59.99841 * 14 13 12 36 36 H 0.96994 * 119.99675 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.30996 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2683 0.9682 0.7348 5 6 4.6315 0.9849 0.7406 6 6 5.3483 0.0345 0.0161 7 6 4.6569 -0.9451 -0.7228 8 6 5.6854 -1.7741 -1.3578 9 6 6.8743 -1.2744 -0.9867 10 7 6.6916 -0.1939 -0.1671 11 6 7.7685 0.6015 0.4280 12 6 8.0651 0.0850 1.8373 13 6 9.1901 0.9152 2.4585 14 6 9.4872 0.3982 3.8675 15 6 10.5949 1.2164 4.4796 16 1 11.0425 2.0241 3.9195 17 6 11.0376 0.9332 5.7543 18 7 10.4928 -0.0507 6.4362 19 14 12.4111 1.9469 6.5128 20 1 12.8507 2.9858 5.5471 21 1 11.9182 2.5995 7.7523 22 1 13.5566 1.0609 6.8416 23 6 3.2639 -0.9611 -0.7265 24 1 2.7223 1.7095 1.2994 25 1 5.1580 1.7377 1.3085 26 1 5.5183 -2.6249 -2.0017 27 1 7.8337 -1.6666 -1.2906 28 1 8.6649 0.5167 -0.1863 29 1 7.4618 1.6462 0.4810 30 1 7.1687 0.1698 2.4515 31 1 8.3717 -0.9597 1.7842 32 1 10.0864 0.8300 1.8440 33 1 8.8839 1.9600 2.5115 34 1 8.5910 0.4831 4.4821 35 1 9.7935 -0.6465 3.8142 36 1 10.8040 -0.2496 7.3330 37 1 2.7290 -1.7101 -1.2914 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385343721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:16 Heat of formation + Delta-G solvation = 51.742835 kcal Electronic energy + Delta-G solvation = -18410.131736 eV Core-core repulsion = 15537.554802 eV Total energy + Delta-G solvation = -2872.576933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.29731 -38.86947 -37.17794 -36.57815 -34.86314 -33.21027 -31.66550 -30.21619 -29.37360 -26.69382 -24.64874 -23.43632 -23.16123 -21.82760 -21.06081 -19.45107 -18.45229 -17.94148 -17.12355 -16.50415 -16.23710 -15.87352 -15.52223 -14.98773 -14.88281 -14.71344 -14.44492 -14.21689 -13.93752 -13.65005 -13.54132 -13.48584 -13.42703 -13.07964 -12.85466 -12.45532 -12.27233 -12.16417 -12.07710 -11.80699 -11.41783 -11.33339 -11.11391 -10.61862 -10.55670 -9.16310 -8.59940 -8.19606 -6.30850 -0.06415 0.31256 1.40636 1.41297 1.54022 1.67377 1.82598 1.94389 2.05042 2.41442 2.95738 3.02176 3.13963 3.69553 3.81583 3.97796 4.03288 4.11463 4.30401 4.38810 4.42951 4.60201 4.65310 4.77108 4.78114 4.85680 4.98237 5.11653 5.12014 5.28725 5.29847 5.33529 5.42781 5.55368 5.72863 5.77361 5.83031 5.88044 6.23874 6.25303 6.40353 6.52185 6.88173 7.39158 8.92194 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026704 B = 0.003140 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.285964 B = 8913.723031 C = 9561.907425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.289 3.711 3 C -0.078 4.078 4 C -0.057 4.057 5 C -0.131 4.131 6 C 0.106 3.894 7 C -0.136 4.136 8 C -0.205 4.205 9 C 0.050 3.950 10 N -0.479 5.479 11 C 0.113 3.887 12 C -0.122 4.122 13 C -0.094 4.094 14 C 0.021 3.979 15 C -0.540 4.540 16 H 0.064 0.936 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.963 3.037 20 H -0.259 1.259 21 H -0.281 1.281 22 H -0.280 1.280 23 C -0.005 4.005 24 H 0.148 0.852 25 H 0.138 0.862 26 H 0.171 0.829 27 H 0.197 0.803 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.059 0.941 34 H -0.014 1.014 35 H -0.012 1.012 36 H 0.262 0.738 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 -0.313 -17.709 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.024 4.024 3 C -0.083 4.083 4 C -0.078 4.078 5 C -0.152 4.152 6 C -0.004 4.004 7 C -0.142 4.142 8 C -0.229 4.229 9 C -0.074 4.074 10 N -0.160 5.160 11 C -0.007 4.007 12 C -0.161 4.161 13 C -0.132 4.132 14 C -0.016 4.016 15 C -0.578 4.578 16 H 0.082 0.918 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.788 3.212 20 H -0.182 1.182 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.027 4.027 24 H 0.166 0.834 25 H 0.155 0.845 26 H 0.189 0.811 27 H 0.214 0.786 28 H 0.132 0.868 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.005 0.995 35 H 0.006 0.994 36 H 0.071 0.929 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.535 -0.223 -17.447 19.884 hybrid contribution 1.046 0.175 1.069 1.506 sum -8.489 -0.049 -16.378 18.447 Atomic orbital electron populations 1.81257 1.13279 1.10022 1.10855 1.25807 0.92589 0.92086 0.91956 1.15694 0.83232 1.02112 1.07243 1.20601 0.92991 0.97200 0.97050 1.19883 0.93527 0.99768 1.02006 1.18785 0.84106 0.98037 0.99437 1.19331 0.93141 0.98781 1.02901 1.22004 0.89791 1.03719 1.07391 1.22468 1.01256 0.88996 0.94667 1.44383 1.04222 1.26708 1.40672 1.21989 0.89607 0.95357 0.93793 1.21866 0.98771 1.00032 0.95400 1.21356 0.97143 0.98815 0.95909 1.19027 0.94701 0.94888 0.92966 1.21780 1.19295 1.16534 1.00208 0.91797 1.26006 0.99584 0.96462 0.98063 1.70112 1.44016 1.31380 1.12127 0.85421 0.78644 0.78747 0.78381 1.18248 1.20642 1.20559 1.20692 0.91674 0.95620 0.94675 0.83414 0.84466 0.81135 0.78623 0.86768 0.88396 0.93145 0.92558 0.91953 0.92247 0.99541 0.99372 0.92886 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.88 18.54 19.01 0.35 -12.52 16 2 C 0.29 6.46 15.32 88.33 1.35 7.82 16 3 C -0.08 -1.51 5.73 -21.32 -0.12 -1.63 16 4 C -0.06 -1.05 9.66 22.31 0.22 -0.83 16 5 C -0.13 -2.63 9.90 22.09 0.22 -2.41 16 6 C 0.11 2.31 6.81 39.16 0.27 2.57 16 7 C -0.14 -2.75 6.36 -20.21 -0.13 -2.88 16 8 C -0.21 -3.45 11.09 23.52 0.26 -3.19 16 9 C 0.05 0.84 11.27 82.99 0.94 1.78 16 10 N -0.48 -9.67 2.77 -515.74 -1.43 -11.10 16 11 C 0.11 2.21 5.99 86.38 0.52 2.73 16 12 C -0.12 -3.44 5.54 30.59 0.17 -3.27 16 13 C -0.09 -3.32 5.15 30.59 0.16 -3.17 16 14 C 0.02 1.07 4.97 29.85 0.15 1.22 16 15 C -0.54 -29.62 9.11 25.60 0.23 -29.39 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 18 N -0.94 -56.42 13.29 21.45 0.28 -56.14 16 19 Si 0.96 43.18 29.54 68.60 2.03 45.21 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 C -0.01 -0.10 9.81 22.75 0.22 0.13 16 24 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 25 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 26 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 27 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 28 H 0.11 1.74 8.12 -2.38 -0.02 1.72 16 29 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 34 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 37 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -68.36 329.08 7.20 -61.16 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.06 Total: 3.66 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 4.91 Total: -30.27 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -0.79 Total: -79.76 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -68.36 7.20 -61.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385343721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.900 kcal (2) G-P(sol) polarization free energy of solvation -68.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds