Wall clock time and date at job start Mon Mar 30 2020 07:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47095 * 240.00306 * 3 2 1 5 5 H 1.48495 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46969 * 120.00193 * 3 2 1 7 7 C 1.37879 * 119.99567 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99574 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47100 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47183 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47183 * 179.97438 * 11 10 9 13 13 O 1.42899 * 109.46880 * 179.97438 * 12 11 10 14 14 C 1.35961 * 116.99842 * 180.02562 * 13 12 11 15 15 C 1.38942 * 120.06390 * 89.99689 * 14 13 12 16 16 F 1.35104 * 120.04821 * 359.97438 * 15 14 13 17 17 C 1.38297 * 119.90644 * 180.25565 * 15 14 13 18 18 C 1.38299 * 120.02359 * 359.44628 * 17 15 14 19 19 C 1.38218 * 120.13088 * 0.55755 * 18 17 15 20 20 C 1.38221 * 120.09054 * 359.72092 * 19 18 17 21 21 C 1.50701 * 120.01454 * 180.02562 * 20 19 18 22 22 O 1.42908 * 109.47180 * 359.97438 * 21 20 19 23 23 H 0.97003 * 119.99787 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47546 * 60.00000 * 9 7 2 25 25 H 1.09005 * 109.47172 * 300.00245 * 9 7 2 26 26 H 1.09003 * 109.47123 * 60.00383 * 10 9 7 27 27 H 1.08998 * 109.47661 * 299.99652 * 10 9 7 28 28 H 1.08997 * 109.46724 * 59.99743 * 11 10 9 29 29 H 1.09005 * 109.47171 * 300.00066 * 11 10 9 30 30 H 1.08997 * 109.47501 * 60.00218 * 12 11 10 31 31 H 1.09005 * 109.47121 * 300.00097 * 12 11 10 32 32 H 1.07999 * 119.98767 * 179.70372 * 17 15 14 33 33 H 1.08009 * 119.93330 * 180.27983 * 18 17 15 34 34 H 1.07996 * 119.95394 * 179.69493 * 19 18 17 35 35 H 1.09003 * 109.47297 * 119.97536 * 21 20 19 36 36 H 1.08999 * 109.47211 * 239.97970 * 21 20 19 37 37 H 0.96689 * 114.00056 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 6 2.4744 -6.1501 -0.0005 13 8 1.7598 -7.3876 0.0007 14 6 2.5002 -8.5278 0.0008 15 6 2.8802 -9.1109 1.2034 16 9 2.5148 -8.5453 2.3747 17 6 3.6378 -10.2678 1.1998 18 6 4.0068 -10.8496 0.0006 19 6 3.6296 -10.2707 -1.1965 20 6 2.8772 -9.1112 -1.1988 21 6 2.4664 -8.4817 -2.5050 22 8 2.9719 -9.2626 -3.5899 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6246 -2.5571 0.8897 26 1 2.8718 -3.6044 0.8895 27 1 2.8718 -3.6045 -0.8905 28 1 0.8532 -5.0450 -0.8896 29 1 0.8537 -5.0446 0.8904 30 1 3.1016 -6.0924 0.8890 31 1 3.1004 -6.0924 -0.8910 32 1 3.9380 -10.7195 2.1338 33 1 4.5948 -11.7557 -0.0005 34 1 3.9235 -10.7247 -2.1313 35 1 1.3787 -8.4410 -2.5625 36 1 2.8716 -7.4716 -2.5649 37 1 2.7448 -8.9158 -4.4634 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385379816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:57 Heat of formation + Delta-G solvation = -130.439873 kcal Electronic energy + Delta-G solvation = -19647.989240 eV Core-core repulsion = 16304.450296 eV Total energy + Delta-G solvation = -3343.538944 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.95090 -40.15188 -37.76144 -36.80485 -34.75250 -32.48578 -31.63494 -30.19030 -28.64215 -26.41490 -24.92773 -22.72147 -21.92356 -21.76681 -20.14433 -18.07660 -17.96218 -17.04940 -16.39907 -16.30636 -15.94717 -15.36404 -15.22463 -15.04883 -14.65248 -14.44454 -14.25128 -13.84597 -13.15435 -12.66846 -12.48618 -12.26631 -12.14054 -11.79667 -11.66295 -11.28202 -11.10141 -10.77027 -10.62490 -10.61228 -10.47433 -9.88499 -9.69372 -9.37549 -9.10560 -8.93113 -8.76055 -8.34801 -5.99884 -4.02628 0.78413 0.89574 3.09452 3.33105 3.37520 3.39859 3.59711 3.68114 4.24423 4.45928 4.50648 4.66079 4.92952 5.03156 5.08368 5.18589 5.24614 5.33769 5.35586 5.36855 5.62853 5.71308 5.82891 6.00228 6.04435 6.07423 6.13824 6.38081 6.49138 6.70703 6.85420 7.07274 7.29866 7.42257 7.67060 7.81381 8.00037 8.41972 9.04288 9.61339 11.11433 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027157 B = 0.003313 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.775700 B = 8449.202305 C = 9048.925699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.107 4.107 11 C -0.115 4.115 12 C 0.066 3.934 13 O -0.329 6.329 14 C 0.074 3.926 15 C 0.080 3.920 16 F -0.130 7.130 17 C -0.145 4.145 18 C -0.103 4.103 19 C -0.096 4.096 20 C -0.084 4.084 21 C 0.120 3.880 22 O -0.572 6.572 23 H 0.261 0.739 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.180 -22.381 -3.310 23.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.153 4.153 12 C -0.007 4.007 13 O -0.247 6.247 14 C 0.029 3.971 15 C 0.061 3.939 16 F -0.108 7.108 17 C -0.164 4.164 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.085 4.085 21 C 0.043 3.957 22 O -0.378 6.378 23 H 0.071 0.929 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 7.044 -22.554 -2.768 23.790 hybrid contribution 0.327 1.426 -0.105 1.467 sum 7.371 -21.128 -2.872 22.560 Atomic orbital electron populations 1.69959 1.06059 1.26726 1.50719 1.25031 0.94859 0.99264 0.95323 0.86650 0.79575 0.83115 0.78609 1.20247 1.21272 1.20237 1.21223 0.92994 0.91118 1.50771 0.92753 1.19081 0.93937 0.91069 0.97408 1.21589 0.99261 0.93138 1.00477 1.21685 0.98008 0.92434 1.03181 1.23079 0.95669 0.81467 1.00530 1.86110 1.32652 1.11727 1.94166 1.18426 0.97508 0.90563 0.90599 1.18036 0.99757 0.95099 0.81041 1.91525 1.89803 1.84431 1.45035 1.21137 0.99845 0.95207 1.00196 1.21057 0.99697 1.00021 0.91296 1.20981 0.96913 0.94623 0.98915 1.19914 0.98328 0.96989 0.93286 1.20750 0.98228 0.93133 0.83592 1.86355 1.79641 1.54619 1.17205 0.92924 0.96485 0.96449 0.93162 0.93230 0.91409 0.91250 0.92839 0.92963 0.84346 0.84693 0.83988 0.91130 0.91654 0.76558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.19 5.15 -26.73 -0.14 -2.32 16 11 C -0.12 -2.01 5.58 -26.73 -0.15 -2.16 16 12 C 0.07 1.00 6.06 37.16 0.23 1.23 16 13 O -0.33 -5.08 9.35 -19.62 -0.18 -5.27 16 14 C 0.07 1.02 5.70 -39.18 -0.22 0.80 16 15 C 0.08 1.06 7.31 -39.30 -0.29 0.77 16 16 F -0.13 -1.91 17.11 2.25 0.04 -1.87 16 17 C -0.14 -1.46 10.02 -39.54 -0.40 -1.86 16 18 C -0.10 -0.90 10.04 -39.57 -0.40 -1.30 16 19 C -0.10 -0.97 9.37 -39.59 -0.37 -1.34 16 20 C -0.08 -1.00 5.89 -104.49 -0.62 -1.62 16 21 C 0.12 1.24 6.91 36.01 0.25 1.49 16 22 O -0.57 -5.01 12.14 -35.23 -0.43 -5.44 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.72 7.32 -51.93 -0.38 0.34 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 34 H 0.14 1.29 7.00 -52.49 -0.37 0.93 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.67 7.32 -51.93 -0.38 0.29 16 37 H 0.39 1.68 9.12 45.56 0.42 2.09 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -32.44 322.39 -7.13 -39.57 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.48 Total: -2.59 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -2.65 Total: -19.59 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.61 Total: -10.70 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.44 -7.13 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385379816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.868 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds