Wall clock time and date at job start Mon Mar 30 2020 07:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47095 * 240.00306 * 3 2 1 5 5 H 1.48495 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46969 * 120.00193 * 3 2 1 7 7 C 1.37879 * 119.99567 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99574 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47100 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47183 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47183 * 179.97438 * 11 10 9 13 13 O 1.42899 * 109.46880 * 179.97438 * 12 11 10 14 14 C 1.35961 * 116.99842 * 180.02562 * 13 12 11 15 15 C 1.38942 * 120.06390 * 89.99689 * 14 13 12 16 16 F 1.35104 * 120.04821 * 359.97438 * 15 14 13 17 17 C 1.38297 * 119.90644 * 180.25565 * 15 14 13 18 18 C 1.38299 * 120.02359 * 359.44628 * 17 15 14 19 19 C 1.38218 * 120.13088 * 0.55755 * 18 17 15 20 20 C 1.38221 * 120.09054 * 359.72092 * 19 18 17 21 21 C 1.50701 * 120.01454 * 180.02562 * 20 19 18 22 22 O 1.42908 * 109.47180 * 359.97438 * 21 20 19 23 23 H 0.97003 * 119.99787 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47546 * 60.00000 * 9 7 2 25 25 H 1.09005 * 109.47172 * 300.00245 * 9 7 2 26 26 H 1.09003 * 109.47123 * 60.00383 * 10 9 7 27 27 H 1.08998 * 109.47661 * 299.99652 * 10 9 7 28 28 H 1.08997 * 109.46724 * 59.99743 * 11 10 9 29 29 H 1.09005 * 109.47171 * 300.00066 * 11 10 9 30 30 H 1.08997 * 109.47501 * 60.00218 * 12 11 10 31 31 H 1.09005 * 109.47121 * 300.00097 * 12 11 10 32 32 H 1.07999 * 119.98767 * 179.70372 * 17 15 14 33 33 H 1.08009 * 119.93330 * 180.27983 * 18 17 15 34 34 H 1.07996 * 119.95394 * 179.69493 * 19 18 17 35 35 H 1.09003 * 109.47297 * 119.97536 * 21 20 19 36 36 H 1.08999 * 109.47211 * 239.97970 * 21 20 19 37 37 H 0.96689 * 114.00056 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 6 2.4744 -6.1501 -0.0005 13 8 1.7598 -7.3876 0.0007 14 6 2.5002 -8.5278 0.0008 15 6 2.8802 -9.1109 1.2034 16 9 2.5148 -8.5453 2.3747 17 6 3.6378 -10.2678 1.1998 18 6 4.0068 -10.8496 0.0006 19 6 3.6296 -10.2707 -1.1965 20 6 2.8772 -9.1112 -1.1988 21 6 2.4664 -8.4817 -2.5050 22 8 2.9719 -9.2626 -3.5899 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6246 -2.5571 0.8897 26 1 2.8718 -3.6044 0.8895 27 1 2.8718 -3.6045 -0.8905 28 1 0.8532 -5.0450 -0.8896 29 1 0.8537 -5.0446 0.8904 30 1 3.1016 -6.0924 0.8890 31 1 3.1004 -6.0924 -0.8910 32 1 3.9380 -10.7195 2.1338 33 1 4.5948 -11.7557 -0.0005 34 1 3.9235 -10.7247 -2.1313 35 1 1.3787 -8.4410 -2.5625 36 1 2.8716 -7.4716 -2.5649 37 1 2.7448 -8.9158 -4.4634 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385379816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:57 Heat of formation + Delta-G solvation = -151.190311 kcal Electronic energy + Delta-G solvation = -19648.889047 eV Core-core repulsion = 16304.450296 eV Total energy + Delta-G solvation = -3344.438751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.97261 -41.07999 -38.76825 -37.51754 -36.50143 -34.44247 -32.47909 -31.36055 -30.15693 -27.33105 -26.63353 -23.91766 -23.24313 -22.69605 -21.86061 -19.05864 -18.79224 -18.45771 -17.95900 -17.28805 -17.03418 -16.58754 -16.53558 -16.09099 -15.91480 -15.54892 -15.22402 -15.09392 -14.47281 -14.29263 -13.80830 -13.43488 -13.24573 -13.18857 -12.93652 -12.80905 -12.50312 -12.42070 -12.25811 -12.02079 -11.52532 -11.37606 -11.32186 -11.15701 -10.96432 -10.55840 -9.75760 -9.68002 -8.20700 -6.32464 -0.07644 0.05624 1.39825 1.43209 1.51174 2.19350 2.40920 2.66346 2.87539 3.12318 3.45004 3.74788 3.90119 3.94994 4.02553 4.15508 4.22939 4.26854 4.34539 4.41758 4.46198 4.51663 4.74102 4.77944 4.93515 5.03077 5.09077 5.20581 5.22533 5.29676 5.34251 5.50703 5.67965 5.72429 5.84056 6.22884 6.35838 6.82711 6.84609 7.36966 8.91149 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027157 B = 0.003313 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.775700 B = 8449.202305 C = 9048.925699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.023 3.977 10 C -0.094 4.094 11 C -0.107 4.107 12 C 0.075 3.925 13 O -0.344 6.344 14 C 0.045 3.955 15 C 0.053 3.947 16 F -0.147 7.147 17 C -0.140 4.140 18 C -0.087 4.087 19 C -0.096 4.096 20 C -0.095 4.095 21 C 0.123 3.877 22 O -0.577 6.577 23 H 0.264 0.736 24 H -0.006 1.006 25 H -0.011 1.011 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.163 0.837 33 H 0.175 0.825 34 H 0.156 0.844 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.338 -23.646 -3.966 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.014 4.014 10 C -0.131 4.131 11 C -0.144 4.144 12 C 0.002 3.998 13 O -0.262 6.262 14 C 0.001 3.999 15 C 0.034 3.966 16 F -0.126 7.126 17 C -0.159 4.159 18 C -0.104 4.104 19 C -0.114 4.114 20 C -0.096 4.096 21 C 0.046 3.954 22 O -0.386 6.386 23 H 0.073 0.927 24 H 0.013 0.987 25 H 0.007 0.993 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.181 0.819 33 H 0.192 0.808 34 H 0.173 0.827 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 9.212 -23.836 -3.442 25.785 hybrid contribution -0.348 1.700 0.060 1.736 sum 8.863 -22.136 -3.382 24.083 Atomic orbital electron populations 1.70101 1.07893 1.27892 1.51584 1.26026 0.95792 1.03518 0.94675 0.85472 0.78244 0.77902 0.79264 1.18921 1.20865 1.19203 1.21697 0.93655 0.92354 1.50718 0.91953 1.19006 0.94453 0.93029 0.94925 1.21354 0.98109 0.92486 1.01174 1.21468 0.98095 0.92255 1.02617 1.22831 0.94665 0.81092 1.01245 1.86056 1.33503 1.12230 1.94408 1.18667 0.99206 0.90350 0.91698 1.18441 1.01299 0.96553 0.80351 1.91473 1.90230 1.84956 1.45910 1.21472 0.98503 0.93934 1.01961 1.21511 0.98367 1.00507 0.90061 1.21256 0.96124 0.93911 1.00148 1.20127 0.98559 0.97694 0.93174 1.20637 0.98019 0.93077 0.83699 1.86303 1.79604 1.54642 1.18043 0.92738 0.98734 0.99252 0.92814 0.92013 0.91365 0.92512 0.93033 0.91287 0.81927 0.80792 0.82654 0.91460 0.91835 0.74385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 3 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.50 9.11 25.60 0.23 -31.27 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.09 -3.86 5.15 30.60 0.16 -3.70 16 11 C -0.11 -3.79 5.58 30.60 0.17 -3.62 16 12 C 0.08 2.28 6.06 71.98 0.44 2.72 16 13 O -0.34 -10.77 9.35 -93.11 -0.87 -11.64 16 14 C 0.05 1.23 5.70 22.53 0.13 1.36 16 15 C 0.05 1.37 7.31 22.45 0.16 1.54 16 16 F -0.15 -4.40 17.11 44.97 0.77 -3.63 16 17 C -0.14 -2.50 10.02 22.30 0.22 -2.28 16 18 C -0.09 -1.22 10.04 22.28 0.22 -1.00 16 19 C -0.10 -1.70 9.37 22.26 0.21 -1.49 16 20 C -0.09 -2.13 5.89 -19.78 -0.12 -2.25 16 21 C 0.12 2.41 6.91 71.24 0.49 2.90 16 22 O -0.58 -8.97 12.14 -148.98 -1.81 -10.78 16 23 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 24 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 25 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.84 7.32 -2.38 -0.02 1.82 16 32 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.16 2.33 7.00 -2.91 -0.02 2.31 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.24 7.32 -2.39 -0.02 1.23 16 37 H 0.40 2.73 9.12 -74.06 -0.68 2.05 16 Total: -1.00 -70.90 322.39 3.73 -67.17 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 0.39 Total: 5.24 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 2.93 Total: -35.40 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.28 Total: -57.49 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -2.68 Total: -22.43 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.77 Total: -3.63 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -70.90 3.73 -67.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385379816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.016 kcal (2) G-P(sol) polarization free energy of solvation -70.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds