Wall clock time and date at job start Mon Mar 30 2020 07:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86797 * 119.99790 * 2 1 4 4 H 1.48499 * 109.47390 * 269.99978 * 3 2 1 5 5 H 1.48505 * 109.47114 * 29.99886 * 3 2 1 6 6 H 1.48497 * 109.47308 * 150.00049 * 3 2 1 7 7 C 1.37875 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00344 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47183 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46988 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46858 * 180.02562 * 11 10 9 13 13 O 1.42891 * 109.46780 * 179.97438 * 12 11 10 14 14 C 1.35901 * 116.99693 * 179.97438 * 13 12 11 15 15 C 1.38708 * 120.04559 * 0.02807 * 14 13 12 16 16 C 1.38342 * 119.92554 * 179.97438 * 15 14 13 17 17 F 1.35093 * 120.00069 * 179.97438 * 16 15 14 18 18 C 1.38523 * 119.99992 * 359.74730 * 16 15 14 19 19 C 1.38202 * 120.08494 * 0.50519 * 18 16 15 20 20 C 1.50706 * 119.96033 * 179.76689 * 19 18 16 21 21 O 1.42895 * 109.47147 * 269.72797 * 20 19 18 22 22 C 1.38176 * 120.08433 * 359.49351 * 19 18 16 23 23 H 0.97001 * 119.99805 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47023 * 59.99819 * 9 7 2 25 25 H 1.09002 * 109.47246 * 300.00347 * 9 7 2 26 26 H 1.09006 * 109.46933 * 60.00200 * 10 9 7 27 27 H 1.08992 * 109.47150 * 300.00374 * 10 9 7 28 28 H 1.08998 * 109.47188 * 60.00630 * 11 10 9 29 29 H 1.08999 * 109.46871 * 300.00232 * 11 10 9 30 30 H 1.08998 * 109.46866 * 60.00237 * 12 11 10 31 31 H 1.08992 * 109.47055 * 300.00303 * 12 11 10 32 32 H 1.08003 * 120.03576 * 359.95090 * 15 14 13 33 33 H 1.08003 * 119.95185 * 180.24966 * 18 16 15 34 34 H 1.09001 * 109.46953 * 29.72312 * 20 19 18 35 35 H 1.09000 * 109.47318 * 149.71910 * 20 19 18 36 36 H 0.96700 * 113.99916 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.00705 * 180.23414 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0018 13 8 1.7601 -7.3875 0.0030 14 6 2.5003 -8.5272 0.0032 15 6 3.8856 -8.4557 0.0028 16 6 4.6366 -9.6175 0.0035 17 9 5.9858 -9.5496 0.0026 18 6 4.0052 -10.8504 0.0099 19 6 2.6250 -10.9220 0.0050 20 6 1.9410 -12.2649 0.0067 21 8 1.7241 -12.6906 -1.3400 22 6 1.8714 -9.7638 0.0043 23 1 -0.4850 0.8401 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8893 28 1 0.8535 -5.0451 -0.8886 29 1 0.8540 -5.0445 0.8914 30 1 3.1012 -6.0918 0.8918 31 1 3.1013 -6.0927 -0.8881 32 1 4.3772 -7.4941 0.0016 33 1 4.5923 -11.7569 0.0145 34 1 2.5695 -12.9921 0.5208 35 1 0.9834 -12.1843 0.5211 36 1 1.2869 -13.5498 -1.4153 37 1 0.7930 -9.8212 0.0043 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385386248.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:01 Heat of formation + Delta-G solvation = -132.995971 kcal Electronic energy + Delta-G solvation = -19036.680792 eV Core-core repulsion = 15693.031007 eV Total energy + Delta-G solvation = -3343.649785 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.11653 -40.32530 -38.25377 -36.58853 -34.79154 -32.50124 -31.66484 -30.39293 -28.70653 -26.63838 -25.01818 -22.85918 -22.44019 -21.09346 -20.18817 -18.22783 -17.85868 -17.05405 -16.43102 -16.29421 -16.21844 -16.15107 -15.68130 -14.64526 -14.52874 -14.50201 -14.24577 -14.10233 -13.05053 -12.82269 -12.57814 -12.39389 -12.05487 -11.84196 -11.60263 -11.41665 -11.29712 -10.93148 -10.59928 -10.51424 -10.50060 -10.48788 -9.74071 -9.39060 -9.13738 -9.09676 -8.44237 -8.36249 -6.01336 -4.04060 0.79799 1.03717 3.03516 3.22928 3.31176 3.37447 3.40738 3.87392 4.12275 4.44840 4.51845 4.64260 4.73460 4.80413 4.92666 5.05518 5.11956 5.14197 5.21961 5.34501 5.49718 5.72510 5.80387 5.94441 5.96008 5.99692 6.11506 6.33867 6.46749 6.65827 6.80798 7.03827 7.18999 7.28536 7.65457 7.78954 7.98418 8.40166 9.03043 9.60158 11.10015 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035532 B = 0.002716 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.834788 B =10308.684162 C =10988.612505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.117 4.117 12 C 0.056 3.944 13 O -0.307 6.307 14 C 0.167 3.833 15 C -0.242 4.242 16 C 0.137 3.863 17 F -0.136 7.136 18 C -0.179 4.179 19 C -0.030 4.030 20 C 0.119 3.881 21 O -0.565 6.565 22 C -0.146 4.146 23 H 0.261 0.739 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.382 0.618 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.979 -25.746 0.964 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.019 4.019 13 O -0.219 6.219 14 C 0.120 3.880 15 C -0.262 4.262 16 C 0.118 3.882 17 F -0.115 7.115 18 C -0.198 4.198 19 C -0.031 4.031 20 C 0.041 3.959 21 O -0.371 6.371 22 C -0.165 4.165 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.162 0.838 33 H 0.153 0.847 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.230 0.770 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.959 -25.003 0.847 25.504 hybrid contribution 0.716 0.608 0.139 0.949 sum 5.674 -24.395 0.986 25.066 Atomic orbital electron populations 1.69970 1.06062 1.26639 1.50791 1.25034 0.94862 0.99298 0.95313 0.86589 0.79826 0.83439 0.78116 1.20645 1.21198 1.19888 1.21251 0.93036 0.91083 1.50674 0.92681 1.19091 0.93941 0.91083 0.97443 1.21592 0.99297 0.93030 1.00588 1.21711 0.97987 0.92373 1.03370 1.23199 0.96243 0.81046 1.01376 1.86157 1.35712 1.12789 1.87281 1.18712 0.88928 0.87330 0.93014 1.21311 0.93714 0.99255 1.11906 1.17296 0.76760 0.93810 1.00323 1.91510 1.29052 1.97249 1.93669 1.20830 0.94619 0.96595 1.07776 1.19111 0.92285 0.94013 0.97647 1.20947 0.98789 0.91943 0.84179 1.86579 1.83136 1.41470 1.25939 1.20370 1.00953 0.88850 1.06281 0.92965 0.96443 0.96429 0.93095 0.93080 0.91160 0.91179 0.91860 0.91848 0.83780 0.84694 0.92233 0.91996 0.77029 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.14 5.15 -26.73 -0.14 -2.27 16 11 C -0.12 -1.95 5.58 -26.73 -0.15 -2.10 16 12 C 0.06 0.79 4.74 37.16 0.18 0.96 16 13 O -0.31 -4.43 10.14 -19.43 -0.20 -4.63 16 14 C 0.17 2.18 6.69 -39.22 -0.26 1.91 16 15 C -0.24 -3.01 9.02 -39.37 -0.35 -3.37 16 16 C 0.14 1.64 7.30 -39.44 -0.29 1.35 16 17 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 18 C -0.18 -1.87 9.67 -39.49 -0.38 -2.25 16 19 C -0.03 -0.30 5.51 -104.65 -0.58 -0.88 16 20 C 0.12 0.83 7.17 36.01 0.26 1.09 16 21 O -0.57 -4.45 13.64 -35.23 -0.48 -4.93 16 22 C -0.15 -1.66 9.64 -39.42 -0.38 -2.04 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 0.82 7.66 -51.93 -0.40 0.42 16 31 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 32 H 0.14 1.68 6.30 -52.48 -0.33 1.35 16 33 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 34 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 35 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 36 H 0.38 1.02 9.12 45.56 0.42 1.44 16 37 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 323.12 15.07 4.87 4.87 Total: -1.00 -32.41 323.12 -7.17 -39.58 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -4.47 Total: -2.86 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -2.65 Total: -20.78 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.68 Total: -9.57 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.41 -7.17 -39.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385386248.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.417 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds