Wall clock time and date at job start Mon Mar 30 2020 07:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86797 * 119.99790 * 2 1 4 4 H 1.48499 * 109.47390 * 269.99978 * 3 2 1 5 5 H 1.48505 * 109.47114 * 29.99886 * 3 2 1 6 6 H 1.48497 * 109.47308 * 150.00049 * 3 2 1 7 7 C 1.37875 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00344 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47183 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46988 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46858 * 180.02562 * 11 10 9 13 13 O 1.42891 * 109.46780 * 179.97438 * 12 11 10 14 14 C 1.35901 * 116.99693 * 179.97438 * 13 12 11 15 15 C 1.38708 * 120.04559 * 0.02807 * 14 13 12 16 16 C 1.38342 * 119.92554 * 179.97438 * 15 14 13 17 17 F 1.35093 * 120.00069 * 179.97438 * 16 15 14 18 18 C 1.38523 * 119.99992 * 359.74730 * 16 15 14 19 19 C 1.38202 * 120.08494 * 0.50519 * 18 16 15 20 20 C 1.50706 * 119.96033 * 179.76689 * 19 18 16 21 21 O 1.42895 * 109.47147 * 269.72797 * 20 19 18 22 22 C 1.38176 * 120.08433 * 359.49351 * 19 18 16 23 23 H 0.97001 * 119.99805 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47023 * 59.99819 * 9 7 2 25 25 H 1.09002 * 109.47246 * 300.00347 * 9 7 2 26 26 H 1.09006 * 109.46933 * 60.00200 * 10 9 7 27 27 H 1.08992 * 109.47150 * 300.00374 * 10 9 7 28 28 H 1.08998 * 109.47188 * 60.00630 * 11 10 9 29 29 H 1.08999 * 109.46871 * 300.00232 * 11 10 9 30 30 H 1.08998 * 109.46866 * 60.00237 * 12 11 10 31 31 H 1.08992 * 109.47055 * 300.00303 * 12 11 10 32 32 H 1.08003 * 120.03576 * 359.95090 * 15 14 13 33 33 H 1.08003 * 119.95185 * 180.24966 * 18 16 15 34 34 H 1.09001 * 109.46953 * 29.72312 * 20 19 18 35 35 H 1.09000 * 109.47318 * 149.71910 * 20 19 18 36 36 H 0.96700 * 113.99916 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.00705 * 180.23414 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0018 13 8 1.7601 -7.3875 0.0030 14 6 2.5003 -8.5272 0.0032 15 6 3.8856 -8.4557 0.0028 16 6 4.6366 -9.6175 0.0035 17 9 5.9858 -9.5496 0.0026 18 6 4.0052 -10.8504 0.0099 19 6 2.6250 -10.9220 0.0050 20 6 1.9410 -12.2649 0.0067 21 8 1.7241 -12.6906 -1.3400 22 6 1.8714 -9.7638 0.0043 23 1 -0.4850 0.8401 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8893 28 1 0.8535 -5.0451 -0.8886 29 1 0.8540 -5.0445 0.8914 30 1 3.1012 -6.0918 0.8918 31 1 3.1013 -6.0927 -0.8881 32 1 4.3772 -7.4941 0.0016 33 1 4.5923 -11.7569 0.0145 34 1 2.5695 -12.9921 0.5208 35 1 0.9834 -12.1843 0.5211 36 1 1.2869 -13.5498 -1.4153 37 1 0.7930 -9.8212 0.0043 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385386248.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:00 Heat of formation + Delta-G solvation = -153.853012 kcal Electronic energy + Delta-G solvation = -19037.585221 eV Core-core repulsion = 15693.031007 eV Total energy + Delta-G solvation = -3344.554214 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.03000 -41.26302 -39.10349 -37.27819 -36.46675 -34.44184 -32.46244 -31.57019 -30.20805 -27.48031 -26.62735 -23.93681 -23.74926 -22.13793 -21.81609 -19.17659 -18.47672 -18.36631 -17.89320 -17.40843 -17.26638 -17.06128 -16.65044 -16.51400 -15.57823 -15.45781 -15.21447 -15.07990 -14.49426 -14.02608 -13.86273 -13.62616 -13.44566 -13.11281 -12.91980 -12.67563 -12.63185 -12.39755 -12.27000 -12.03635 -11.78955 -11.40954 -11.36696 -11.14877 -10.96746 -10.56114 -9.99947 -9.36100 -8.20916 -6.32230 -0.05199 0.15741 1.39950 1.41269 1.52369 2.02162 2.38218 2.41046 3.05672 3.12391 3.43696 3.83332 3.85536 3.92850 3.93759 3.98859 4.10209 4.26112 4.31687 4.43797 4.50218 4.52090 4.66355 4.75666 4.93511 4.94599 5.08291 5.08857 5.21825 5.23892 5.32554 5.51770 5.60803 5.73577 5.84986 6.23035 6.27163 6.85371 6.94054 7.37271 8.91114 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035532 B = 0.002716 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.834788 B =10308.684162 C =10988.612505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.095 4.095 11 C -0.109 4.109 12 C 0.064 3.936 13 O -0.321 6.321 14 C 0.146 3.854 15 C -0.251 4.251 16 C 0.123 3.877 17 F -0.141 7.141 18 C -0.174 4.174 19 C -0.032 4.032 20 C 0.119 3.881 21 O -0.589 6.589 22 C -0.151 4.151 23 H 0.264 0.736 24 H -0.008 1.008 25 H -0.007 1.007 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.404 0.596 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.190 -27.067 1.102 27.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.015 4.015 10 C -0.132 4.132 11 C -0.146 4.146 12 C -0.010 4.010 13 O -0.235 6.235 14 C 0.100 3.900 15 C -0.270 4.270 16 C 0.104 3.896 17 F -0.120 7.120 18 C -0.193 4.193 19 C -0.032 4.032 20 C 0.042 3.958 21 O -0.399 6.399 22 C -0.170 4.170 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.011 0.989 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.165 0.835 33 H 0.175 0.825 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.255 0.745 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.174 -26.361 0.983 27.092 hybrid contribution 0.299 0.910 0.087 0.962 sum 6.474 -25.450 1.070 26.283 Atomic orbital electron populations 1.70106 1.07852 1.27801 1.51736 1.26015 0.95788 1.03488 0.94763 0.85434 0.78670 0.78362 0.78508 1.19769 1.20769 1.18645 1.21731 0.93659 0.92379 1.50457 0.91966 1.19022 0.94506 0.93047 0.94975 1.21355 0.98119 0.92423 1.01333 1.21488 0.98122 0.92158 1.02881 1.22980 0.95208 0.80333 1.02523 1.86093 1.36247 1.13162 1.87995 1.18902 0.89235 0.87232 0.94650 1.21378 0.93662 0.99770 1.12204 1.17475 0.76641 0.94364 1.01165 1.91495 1.29348 1.97305 1.93808 1.21152 0.95071 0.96815 1.06236 1.19536 0.92284 0.95204 0.96172 1.21047 0.99877 0.90651 0.84259 1.86508 1.83701 1.43305 1.26418 1.20638 1.01690 0.88784 1.05865 0.92757 0.98991 0.98894 0.92231 0.92317 0.91802 0.91645 0.90618 0.90857 0.83530 0.82511 0.89807 0.90335 0.74515 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.09 -3.76 5.15 30.59 0.16 -3.61 16 11 C -0.11 -3.64 5.58 30.60 0.17 -3.47 16 12 C 0.06 1.76 4.74 71.98 0.34 2.10 16 13 O -0.32 -9.16 10.14 -92.44 -0.94 -10.10 16 14 C 0.15 3.70 6.69 22.50 0.15 3.85 16 15 C -0.25 -6.05 9.02 22.41 0.20 -5.85 16 16 C 0.12 2.79 7.30 22.36 0.16 2.95 16 17 F -0.14 -3.32 17.27 44.97 0.78 -2.54 16 18 C -0.17 -3.27 9.67 22.33 0.22 -3.06 16 19 C -0.03 -0.57 5.51 -19.89 -0.11 -0.68 16 20 C 0.12 1.31 7.17 71.24 0.51 1.82 16 21 O -0.59 -7.77 13.64 -148.98 -2.03 -9.80 16 22 C -0.15 -3.26 9.64 22.37 0.22 -3.05 16 23 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 24 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 25 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.08 1.88 7.66 -2.39 -0.02 1.86 16 31 H 0.07 1.86 7.66 -2.39 -0.02 1.84 16 32 H 0.15 3.32 6.30 -2.91 -0.02 3.30 16 33 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 35 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 36 H 0.40 1.09 9.12 -74.06 -0.68 0.41 16 37 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -69.83 323.12 3.38 -66.46 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 0.40 Total: 4.99 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 2.86 Total: -38.27 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.28 Total: -57.18 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -2.97 Total: -19.90 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -69.83 3.38 -66.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385386248.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.395 kcal (2) G-P(sol) polarization free energy of solvation -69.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds