Wall clock time and date at job start Mon Mar 30 2020 07:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48501 * 109.47415 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47399 * 300.00055 * 3 2 1 6 6 H 1.48506 * 109.47338 * 60.00309 * 3 2 1 7 7 C 1.37878 * 120.00619 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00194 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99594 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46704 * 180.02562 * 9 7 2 11 11 C 1.53010 * 109.46876 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46876 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.46735 * 180.02562 * 12 11 10 14 14 C 1.35942 * 117.00239 * 180.02562 * 13 12 11 15 15 C 1.38732 * 120.02470 * 0.02562 * 14 13 12 16 16 C 1.38133 * 119.96608 * 179.97438 * 15 14 13 17 17 C 1.38476 * 120.03055 * 359.97428 * 16 15 14 18 18 F 1.35104 * 119.96701 * 180.02562 * 17 16 15 19 19 C 1.38426 * 120.06258 * 359.79702 * 17 16 15 20 20 C 1.38176 * 120.02777 * 0.46040 * 19 17 16 21 21 C 1.50703 * 120.01509 * 179.79349 * 20 19 17 22 22 O 1.42898 * 109.47171 * 359.72296 * 21 20 19 23 23 H 0.96999 * 120.00360 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46618 * 60.00324 * 9 7 2 25 25 H 1.08998 * 109.47376 * 300.00277 * 9 7 2 26 26 H 1.08994 * 109.47373 * 60.00380 * 10 9 7 27 27 H 1.08998 * 109.47218 * 300.00114 * 10 9 7 28 28 H 1.09002 * 109.46773 * 59.99864 * 11 10 9 29 29 H 1.08998 * 109.47049 * 299.99922 * 11 10 9 30 30 H 1.08994 * 109.47373 * 60.00085 * 12 11 10 31 31 H 1.08998 * 109.47218 * 299.99819 * 12 11 10 32 32 H 1.07992 * 120.02028 * 0.02562 * 15 14 13 33 33 H 1.07998 * 119.98132 * 180.02562 * 16 15 14 34 34 H 1.07998 * 119.98649 * 180.22622 * 19 17 16 35 35 H 1.09002 * 109.47152 * 239.72080 * 21 20 19 36 36 H 1.09001 * 109.46980 * 119.72181 * 21 20 19 37 37 H 0.96708 * 113.99549 * 300.00321 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4749 -6.1499 -0.0018 13 8 1.7604 -7.3875 -0.0030 14 6 2.5008 -8.5276 -0.0032 15 6 3.8863 -8.4556 -0.0017 16 6 4.6374 -9.6149 -0.0013 17 6 4.0081 -10.8484 -0.0019 18 9 4.7441 -11.9814 -0.0010 19 6 2.6258 -10.9217 0.0014 20 6 1.8720 -9.7637 -0.0044 21 6 0.3671 -9.8438 -0.0055 22 8 -0.0369 -11.2145 -0.0065 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 0.8894 27 1 2.8722 -3.6042 -0.8905 28 1 0.8542 -5.0446 -0.8914 29 1 0.8536 -5.0452 0.8886 30 1 3.1016 -6.0926 0.8881 31 1 3.1015 -6.0917 -0.8918 32 1 4.3773 -7.4938 0.0001 33 1 5.7160 -9.5591 0.0003 34 1 2.1363 -11.8844 0.0046 35 1 -0.0224 -9.3495 -0.8955 36 1 -0.0237 -9.3505 0.8844 37 1 0.2762 -11.7162 -0.7717 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385406578.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:54 Heat of formation + Delta-G solvation = -134.476124 kcal Electronic energy + Delta-G solvation = -19261.031540 eV Core-core repulsion = 15917.317571 eV Total energy + Delta-G solvation = -3343.713969 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.03694 -40.51686 -38.03832 -36.66506 -34.82702 -32.56041 -31.81722 -30.07936 -28.73910 -26.46183 -25.26955 -22.99394 -22.10875 -21.38905 -20.21968 -18.48908 -17.64167 -17.22084 -16.73249 -16.30898 -16.23449 -15.71011 -14.93575 -14.84565 -14.57971 -14.50018 -14.22310 -14.09843 -13.12929 -12.97368 -12.67889 -12.51133 -12.00240 -11.85868 -11.68128 -11.49375 -11.19741 -10.96977 -10.66106 -10.55458 -10.52541 -10.47125 -9.78130 -9.42588 -9.31051 -9.11283 -8.39449 -8.25958 -6.04050 -4.06880 0.81722 0.95279 3.04568 3.23967 3.28098 3.35808 3.39464 3.94361 4.11514 4.31127 4.42433 4.50281 4.76872 4.88573 5.07050 5.12916 5.15333 5.24574 5.31957 5.41845 5.45976 5.54815 5.83726 5.85623 5.89989 5.97172 5.99142 6.29495 6.45978 6.61601 6.76580 6.99829 7.20624 7.27919 7.62599 7.75625 7.95518 8.37170 9.00445 9.57590 11.07292 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034420 B = 0.002847 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.274138 B = 9830.976231 C =10605.974175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.117 4.117 12 C 0.058 3.942 13 O -0.309 6.309 14 C 0.135 3.865 15 C -0.180 4.180 16 C -0.112 4.112 17 C 0.055 3.945 18 F -0.143 7.143 19 C -0.111 4.111 20 C -0.137 4.137 21 C 0.128 3.872 22 O -0.564 6.564 23 H 0.260 0.740 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.795 -21.869 -1.223 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.155 4.155 12 C -0.017 4.017 13 O -0.223 6.223 14 C 0.089 3.911 15 C -0.198 4.198 16 C -0.131 4.131 17 C 0.036 3.964 18 F -0.122 7.122 19 C -0.129 4.129 20 C -0.138 4.138 21 C 0.050 3.950 22 O -0.369 6.369 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.173 -21.568 -0.662 22.189 hybrid contribution 1.257 0.801 -0.496 1.571 sum 6.431 -20.767 -1.158 21.771 Atomic orbital electron populations 1.69968 1.06067 1.26562 1.50799 1.25033 0.94856 0.99314 0.95297 0.86542 0.80086 0.83781 0.77621 1.19747 1.20990 1.20980 1.21284 0.93057 0.91065 1.50645 0.92637 1.19093 0.93942 0.91108 0.97441 1.21590 0.99294 0.93045 1.00556 1.21711 0.98005 0.92406 1.03343 1.23174 0.96214 0.81026 1.01275 1.86117 1.35865 1.12741 1.87536 1.18822 0.89956 0.86641 0.95710 1.21201 0.92600 0.99574 1.06460 1.20963 1.00926 0.90594 1.00640 1.17481 0.89184 0.82171 1.07587 1.91486 1.77038 1.49219 1.94430 1.20705 0.91628 0.99229 1.01379 1.19870 0.97968 0.90072 1.05887 1.21025 0.87762 0.82716 1.03464 1.86568 1.78005 1.22494 1.49855 0.92998 0.96447 0.96444 0.93096 0.93116 0.91214 0.91184 0.91908 0.91931 0.84013 0.84472 0.83729 0.91317 0.87354 0.77653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.05 5.15 -26.73 -0.14 -2.19 16 11 C -0.12 -1.84 5.58 -26.73 -0.15 -1.99 16 12 C 0.06 0.74 4.74 37.16 0.18 0.91 16 13 O -0.31 -4.02 9.56 -19.56 -0.19 -4.20 16 14 C 0.14 1.58 6.66 -39.24 -0.26 1.32 16 15 C -0.18 -1.88 9.04 -39.44 -0.36 -2.24 16 16 C -0.11 -1.11 10.02 -39.53 -0.40 -1.50 16 17 C 0.06 0.58 7.30 -39.42 -0.29 0.29 16 18 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 19 C -0.11 -1.08 9.19 -39.53 -0.36 -1.44 16 20 C -0.14 -1.44 5.89 -104.48 -0.62 -2.06 16 21 C 0.13 1.24 6.91 36.01 0.25 1.49 16 22 O -0.56 -5.13 12.68 -35.23 -0.45 -5.58 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 31 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 32 H 0.14 1.31 6.30 -52.49 -0.33 0.98 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.15 1.12 6.60 -52.49 -0.35 0.78 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.38 1.95 8.13 45.56 0.37 2.32 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -31.03 319.28 -7.21 -38.23 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.45 Total: -1.80 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -2.69 Total: -20.37 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.63 Total: -9.78 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.03 -7.21 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385406578.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.243 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds