Wall clock time and date at job start Mon Mar 30 2020 07:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48501 * 109.47415 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47399 * 300.00055 * 3 2 1 6 6 H 1.48506 * 109.47338 * 60.00309 * 3 2 1 7 7 C 1.37878 * 120.00619 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00194 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99594 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46704 * 180.02562 * 9 7 2 11 11 C 1.53010 * 109.46876 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46876 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.46735 * 180.02562 * 12 11 10 14 14 C 1.35942 * 117.00239 * 180.02562 * 13 12 11 15 15 C 1.38732 * 120.02470 * 0.02562 * 14 13 12 16 16 C 1.38133 * 119.96608 * 179.97438 * 15 14 13 17 17 C 1.38476 * 120.03055 * 359.97428 * 16 15 14 18 18 F 1.35104 * 119.96701 * 180.02562 * 17 16 15 19 19 C 1.38426 * 120.06258 * 359.79702 * 17 16 15 20 20 C 1.38176 * 120.02777 * 0.46040 * 19 17 16 21 21 C 1.50703 * 120.01509 * 179.79349 * 20 19 17 22 22 O 1.42898 * 109.47171 * 359.72296 * 21 20 19 23 23 H 0.96999 * 120.00360 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46618 * 60.00324 * 9 7 2 25 25 H 1.08998 * 109.47376 * 300.00277 * 9 7 2 26 26 H 1.08994 * 109.47373 * 60.00380 * 10 9 7 27 27 H 1.08998 * 109.47218 * 300.00114 * 10 9 7 28 28 H 1.09002 * 109.46773 * 59.99864 * 11 10 9 29 29 H 1.08998 * 109.47049 * 299.99922 * 11 10 9 30 30 H 1.08994 * 109.47373 * 60.00085 * 12 11 10 31 31 H 1.08998 * 109.47218 * 299.99819 * 12 11 10 32 32 H 1.07992 * 120.02028 * 0.02562 * 15 14 13 33 33 H 1.07998 * 119.98132 * 180.02562 * 16 15 14 34 34 H 1.07998 * 119.98649 * 180.22622 * 19 17 16 35 35 H 1.09002 * 109.47152 * 239.72080 * 21 20 19 36 36 H 1.09001 * 109.46980 * 119.72181 * 21 20 19 37 37 H 0.96708 * 113.99549 * 300.00321 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4749 -6.1499 -0.0018 13 8 1.7604 -7.3875 -0.0030 14 6 2.5008 -8.5276 -0.0032 15 6 3.8863 -8.4556 -0.0017 16 6 4.6374 -9.6149 -0.0013 17 6 4.0081 -10.8484 -0.0019 18 9 4.7441 -11.9814 -0.0010 19 6 2.6258 -10.9217 0.0014 20 6 1.8720 -9.7637 -0.0044 21 6 0.3671 -9.8438 -0.0055 22 8 -0.0369 -11.2145 -0.0065 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 0.8894 27 1 2.8722 -3.6042 -0.8905 28 1 0.8542 -5.0446 -0.8914 29 1 0.8536 -5.0452 0.8886 30 1 3.1016 -6.0926 0.8881 31 1 3.1015 -6.0917 -0.8918 32 1 4.3773 -7.4938 0.0001 33 1 5.7160 -9.5591 0.0003 34 1 2.1363 -11.8844 0.0046 35 1 -0.0224 -9.3495 -0.8955 36 1 -0.0237 -9.3505 0.8844 37 1 0.2762 -11.7162 -0.7717 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385406578.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:54 Heat of formation + Delta-G solvation = -153.603035 kcal Electronic energy + Delta-G solvation = -19261.860945 eV Core-core repulsion = 15917.317571 eV Total energy + Delta-G solvation = -3344.543374 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.85219 -41.36404 -38.90715 -37.42987 -36.45645 -34.42176 -32.64939 -31.19140 -30.12105 -27.22193 -26.91089 -24.32355 -22.93033 -22.59899 -21.72455 -19.32659 -18.48747 -18.44735 -17.98016 -17.52712 -17.27304 -16.56222 -16.51733 -15.74149 -15.71107 -15.37654 -15.33078 -15.11698 -14.48235 -14.00725 -13.82872 -13.78060 -13.56750 -13.06165 -12.98293 -12.76615 -12.51675 -12.33965 -12.29712 -11.89373 -11.75122 -11.36776 -11.34900 -11.26075 -11.11554 -10.55755 -10.06706 -9.10000 -8.19987 -6.31068 0.05751 0.13805 1.40744 1.41078 1.54143 2.10092 2.41829 2.45128 3.13634 3.19300 3.41949 3.56115 3.78069 3.95776 3.99105 4.10207 4.13408 4.32045 4.36239 4.49667 4.55210 4.62909 4.73027 4.78614 4.80404 5.08453 5.09737 5.12119 5.22163 5.25312 5.28220 5.54036 5.67441 5.75999 5.86881 6.24513 6.31374 6.74343 6.87225 7.38615 8.92141 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034420 B = 0.002847 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.274138 B = 9830.976231 C =10605.974175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.094 4.094 11 C -0.110 4.110 12 C 0.065 3.935 13 O -0.322 6.322 14 C 0.117 3.883 15 C -0.182 4.182 16 C -0.112 4.112 17 C 0.045 3.955 18 F -0.147 7.147 19 C -0.108 4.108 20 C -0.141 4.141 21 C 0.132 3.868 22 O -0.574 6.574 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.559 -22.415 -1.357 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.147 4.147 12 C -0.009 4.009 13 O -0.236 6.236 14 C 0.071 3.929 15 C -0.200 4.200 16 C -0.131 4.131 17 C 0.026 3.974 18 F -0.126 7.126 19 C -0.127 4.127 20 C -0.142 4.142 21 C 0.055 3.945 22 O -0.382 6.382 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.173 0.827 33 H 0.175 0.825 34 H 0.180 0.820 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.954 -22.143 -0.806 23.223 hybrid contribution 0.681 0.885 -0.462 1.209 sum 7.635 -21.257 -1.268 22.622 Atomic orbital electron populations 1.70103 1.07865 1.27699 1.51868 1.26006 0.95759 1.03474 0.94840 0.85402 0.79187 0.78780 0.77692 1.18351 1.20499 1.20518 1.21771 0.93689 0.92358 1.50210 0.91875 1.19031 0.94558 0.93159 0.94891 1.21348 0.98062 0.92391 1.01389 1.21482 0.98212 0.92321 1.02718 1.22965 0.95086 0.80133 1.02714 1.86061 1.36378 1.13056 1.88100 1.19036 0.90602 0.86361 0.96945 1.21370 0.92144 1.00436 1.06095 1.21199 1.02025 0.90101 0.99766 1.17686 0.89542 0.82341 1.07875 1.91478 1.77140 1.49444 1.94494 1.20882 0.91502 0.99742 1.00558 1.19995 0.98392 0.90018 1.05832 1.20922 0.87356 0.83092 1.03176 1.86533 1.78182 1.22302 1.51135 0.92812 0.99016 0.99072 0.92223 0.92161 0.91864 0.91960 0.90548 0.90413 0.82708 0.82486 0.82013 0.91011 0.88302 0.75714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.54 -30.29 9.11 25.60 0.23 -30.06 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.06 4.97 29.85 0.15 1.21 16 10 C -0.09 -3.55 5.15 30.60 0.16 -3.39 16 11 C -0.11 -3.40 5.58 30.60 0.17 -3.23 16 12 C 0.07 1.56 4.74 71.98 0.34 1.90 16 13 O -0.32 -7.99 9.56 -92.90 -0.89 -8.88 16 14 C 0.12 2.56 6.66 22.49 0.15 2.71 16 15 C -0.18 -3.43 9.04 22.36 0.20 -3.23 16 16 C -0.11 -1.96 10.02 22.30 0.22 -1.74 16 17 C 0.04 0.85 7.30 22.37 0.16 1.02 16 18 F -0.15 -2.95 17.27 44.97 0.78 -2.18 16 19 C -0.11 -1.92 9.19 22.30 0.20 -1.72 16 20 C -0.14 -2.80 5.89 -19.77 -0.12 -2.92 16 21 C 0.13 2.46 6.91 71.24 0.49 2.95 16 22 O -0.57 -9.67 12.68 -148.98 -1.89 -11.56 16 23 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 24 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.08 1.62 7.66 -2.39 -0.02 1.60 16 31 H 0.08 1.63 7.66 -2.39 -0.02 1.61 16 32 H 0.16 2.44 6.30 -2.91 -0.02 2.42 16 33 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 34 H 0.16 2.19 6.60 -2.91 -0.02 2.17 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.39 3.41 8.13 -74.05 -0.60 2.81 16 Total: -1.00 -66.36 319.28 3.62 -62.74 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 0.47 Total: 6.87 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 2.83 Total: -36.23 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.28 Total: -56.46 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -2.78 Total: -20.44 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -66.36 3.62 -62.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385406578.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.863 kcal (2) G-P(sol) polarization free energy of solvation -66.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds