Wall clock time and date at job start Mon Mar 30 2020 07:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29018 * 124.91722 * 2 1 4 4 C 1.31784 * 117.12555 * 180.02562 * 3 2 1 5 5 C 1.50696 * 122.75407 * 180.02562 * 4 3 2 6 6 C 1.33641 * 114.49851 * 0.02562 * 4 3 2 7 7 C 1.50703 * 126.03730 * 179.97438 * 6 4 3 8 8 N 1.46906 * 109.47109 * 90.00197 * 7 6 4 9 9 C 1.46895 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47035 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47380 * 180.02562 * 10 9 8 12 12 C 1.52994 * 109.47374 * 179.97438 * 11 10 9 13 13 C 1.50692 * 109.47447 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99889 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00172 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00249 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99997 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46807 * 89.99929 * 17 15 13 19 19 H 1.48501 * 109.46871 * 209.99746 * 17 15 13 20 20 H 1.48500 * 109.47068 * 330.00117 * 17 15 13 21 21 S 1.70980 * 124.91144 * 180.32324 * 2 1 3 22 22 H 1.08997 * 109.47053 * 89.97061 * 1 2 3 23 23 H 1.08999 * 109.46788 * 209.96885 * 1 2 3 24 24 H 1.09001 * 109.46493 * 329.97402 * 1 2 3 25 25 H 1.08998 * 109.46913 * 270.00143 * 5 4 3 26 26 H 1.09004 * 109.47243 * 29.99352 * 5 4 3 27 27 H 1.08996 * 109.47554 * 150.00155 * 5 4 3 28 28 H 1.08992 * 109.46894 * 329.99932 * 7 6 4 29 29 H 1.09004 * 109.47113 * 210.00083 * 7 6 4 30 30 H 1.00902 * 111.00068 * 56.04268 * 8 7 6 31 31 H 1.08996 * 109.47424 * 299.99656 * 9 8 7 32 32 H 1.09002 * 109.47411 * 60.00282 * 9 8 7 33 33 H 1.09007 * 109.47219 * 300.00436 * 10 9 8 34 34 H 1.09005 * 109.47157 * 59.99991 * 10 9 8 35 35 H 1.08999 * 109.46979 * 300.00363 * 11 10 9 36 36 H 1.08996 * 109.46919 * 59.99709 * 11 10 9 37 37 H 1.09007 * 109.47225 * 300.00412 * 12 11 10 38 38 H 1.09005 * 109.47157 * 59.99971 * 12 11 10 39 39 H 0.96997 * 120.00685 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5309 2.0244 0.0000 6 6 3.9354 -0.4007 -0.0015 7 6 5.3575 -0.8996 -0.0029 8 7 5.8206 -1.0625 1.3817 9 6 7.2061 -1.5492 1.4196 10 6 7.6521 -1.7055 2.8748 11 6 9.0954 -2.2118 2.9143 12 6 9.5416 -2.3674 4.3694 13 6 10.9633 -2.8655 4.4083 14 1 11.4953 -3.0527 3.4873 15 6 11.5847 -3.0832 5.6198 16 7 10.9364 -2.8566 6.7414 17 14 13.3468 -3.7013 5.6680 18 1 14.2771 -2.5438 5.6805 19 1 13.5526 -4.5150 6.8931 20 1 13.6115 -4.5362 4.4688 21 16 2.4856 -1.4021 -0.0079 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3633 -0.8903 0.5134 24 1 -0.3632 0.8898 0.5143 25 1 4.7667 2.3012 -1.0276 26 1 4.0909 2.8787 0.5145 27 1 5.4435 1.7217 0.5133 28 1 5.9945 -0.1798 -0.5167 29 1 5.4054 -1.8594 -0.5173 30 1 5.2079 -1.6758 1.8981 31 1 7.2663 -2.5135 0.9152 32 1 7.8563 -0.8342 0.9155 33 1 7.5919 -0.7409 3.3789 34 1 7.0020 -2.4203 3.3794 35 1 9.1560 -3.1762 2.4101 36 1 9.7452 -1.4967 2.4099 37 1 9.4810 -1.4027 4.8733 38 1 8.8918 -3.0824 4.8742 39 1 11.3736 -3.0094 7.5937 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385784329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:30 Heat of formation + Delta-G solvation = 11.704344 kcal Electronic energy + Delta-G solvation = -17136.719989 eV Core-core repulsion = 14397.850807 eV Total energy + Delta-G solvation = -2738.869181 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.14617 -36.95559 -34.54620 -33.21411 -32.02924 -29.80136 -29.21663 -27.43063 -24.75485 -23.42899 -22.83686 -21.44782 -20.05561 -19.02724 -18.12591 -16.27826 -15.96968 -15.58275 -15.05718 -14.59676 -14.38439 -14.24880 -13.97769 -13.63144 -13.48163 -12.91616 -12.69139 -12.45323 -12.34240 -12.24336 -11.98338 -11.62930 -11.42090 -11.29810 -10.99266 -10.57315 -10.50886 -10.43209 -9.84209 -9.62885 -9.52693 -9.25572 -9.01057 -8.77583 -8.46771 -8.31901 -5.97022 -3.99323 0.47237 1.11000 1.52301 2.57481 3.33219 3.39225 3.42566 3.83990 4.21992 4.48508 4.64676 4.73976 4.84580 5.04022 5.08628 5.31274 5.33366 5.38360 5.43295 5.47041 5.49629 5.53319 5.70439 5.81005 5.87301 6.12961 6.16524 6.20536 6.49774 6.81442 6.90963 6.98904 7.20934 7.28705 7.56117 7.71805 7.87534 8.04016 8.46689 9.08259 9.64491 11.14339 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.044398 B = 0.002532 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.506757 B =11057.442283 C =11195.598750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.046 3.954 3 N -0.473 5.473 4 C 0.083 3.917 5 C -0.080 4.080 6 C -0.220 4.220 7 C 0.137 3.863 8 N -0.685 5.685 9 C 0.059 3.941 10 C -0.115 4.115 11 C -0.108 4.108 12 C 0.021 3.979 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 S 0.108 5.892 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.040 0.960 30 H 0.341 0.659 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.998 5.050 -16.320 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.232 4.232 3 N -0.188 5.188 4 C -0.049 4.049 5 C -0.140 4.140 6 C -0.341 4.341 7 C 0.006 3.994 8 N -0.316 5.316 9 C -0.069 4.069 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 S 0.364 5.636 22 H 0.103 0.897 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.059 0.941 30 H 0.159 0.841 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.283 5.121 -16.076 26.383 hybrid contribution 1.367 -0.639 -0.088 1.512 sum -18.916 4.482 -16.164 25.282 Atomic orbital electron populations 1.20436 0.85233 1.04243 1.03767 1.26912 1.01614 0.91038 1.03637 1.66157 1.04667 1.31639 1.16338 1.20179 0.89905 0.94233 1.00587 1.20406 0.96553 0.94407 1.02599 1.25598 0.99290 0.95619 1.13565 1.20241 0.88084 0.99701 0.91369 1.60581 1.04160 1.55390 1.11459 1.22116 0.87994 0.97806 0.99012 1.21641 0.98171 1.01731 0.93790 1.21585 0.92826 0.99130 1.01114 1.19091 0.95755 0.97021 0.89763 1.21285 0.98448 1.43970 0.92137 0.92774 1.25040 0.97969 0.95753 0.95805 1.69965 1.36945 1.49353 0.97297 0.86609 0.85182 0.78855 0.77440 1.20665 1.21243 1.19926 1.83955 0.98080 1.12578 1.69027 0.89691 0.90104 0.89271 0.91006 0.90740 0.89553 0.88844 0.94146 0.84133 0.95363 0.90969 0.91551 0.92732 0.93669 0.93392 0.96598 0.96743 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.46 36.01 0.38 -0.11 16 2 C 0.05 0.47 7.39 -13.46 -0.10 0.37 16 3 N -0.47 -5.81 10.53 -8.06 -0.08 -5.90 16 4 C 0.08 0.99 6.74 -84.23 -0.57 0.42 16 5 C -0.08 -0.80 9.82 36.00 0.35 -0.45 16 6 C -0.22 -2.44 6.10 -35.92 -0.22 -2.66 16 7 C 0.14 1.46 5.61 -4.97 -0.03 1.43 16 8 N -0.68 -8.48 6.49 -115.06 -0.75 -9.22 16 9 C 0.06 0.81 5.68 -3.82 -0.02 0.78 16 10 C -0.12 -1.95 5.47 -26.73 -0.15 -2.10 16 11 C -0.11 -2.23 5.15 -26.73 -0.14 -2.36 16 12 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 13 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 17 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 21 S 0.11 1.04 23.18 -107.50 -2.49 -1.45 16 22 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.88 7.35 -51.93 -0.38 0.50 16 28 H 0.09 0.93 7.43 -51.93 -0.39 0.54 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.34 4.18 8.72 -39.29 -0.34 3.84 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -31.89 339.87 -10.10 -41.98 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.57 Total: -2.69 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -1.04 Total: -18.06 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: -0.10 Total: -41.78 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.45 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.89 -10.10 -41.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385784329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.687 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds