Wall clock time and date at job start Mon Mar 30 2020 07:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29018 * 124.91722 * 2 1 4 4 C 1.31784 * 117.12555 * 180.02562 * 3 2 1 5 5 C 1.50696 * 122.75407 * 180.02562 * 4 3 2 6 6 C 1.33641 * 114.49851 * 0.02562 * 4 3 2 7 7 C 1.50703 * 126.03730 * 179.97438 * 6 4 3 8 8 N 1.46906 * 109.47109 * 90.00197 * 7 6 4 9 9 C 1.46895 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47035 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47380 * 180.02562 * 10 9 8 12 12 C 1.52994 * 109.47374 * 179.97438 * 11 10 9 13 13 C 1.50692 * 109.47447 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99889 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00172 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00249 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99997 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46807 * 89.99929 * 17 15 13 19 19 H 1.48501 * 109.46871 * 209.99746 * 17 15 13 20 20 H 1.48500 * 109.47068 * 330.00117 * 17 15 13 21 21 S 1.70980 * 124.91144 * 180.32324 * 2 1 3 22 22 H 1.08997 * 109.47053 * 89.97061 * 1 2 3 23 23 H 1.08999 * 109.46788 * 209.96885 * 1 2 3 24 24 H 1.09001 * 109.46493 * 329.97402 * 1 2 3 25 25 H 1.08998 * 109.46913 * 270.00143 * 5 4 3 26 26 H 1.09004 * 109.47243 * 29.99352 * 5 4 3 27 27 H 1.08996 * 109.47554 * 150.00155 * 5 4 3 28 28 H 1.08992 * 109.46894 * 329.99932 * 7 6 4 29 29 H 1.09004 * 109.47113 * 210.00083 * 7 6 4 30 30 H 1.00902 * 111.00068 * 56.04268 * 8 7 6 31 31 H 1.08996 * 109.47424 * 299.99656 * 9 8 7 32 32 H 1.09002 * 109.47411 * 60.00282 * 9 8 7 33 33 H 1.09007 * 109.47219 * 300.00436 * 10 9 8 34 34 H 1.09005 * 109.47157 * 59.99991 * 10 9 8 35 35 H 1.08999 * 109.46979 * 300.00363 * 11 10 9 36 36 H 1.08996 * 109.46919 * 59.99709 * 11 10 9 37 37 H 1.09007 * 109.47225 * 300.00412 * 12 11 10 38 38 H 1.09005 * 109.47157 * 59.99971 * 12 11 10 39 39 H 0.96997 * 120.00685 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5309 2.0244 0.0000 6 6 3.9354 -0.4007 -0.0015 7 6 5.3575 -0.8996 -0.0029 8 7 5.8206 -1.0625 1.3817 9 6 7.2061 -1.5492 1.4196 10 6 7.6521 -1.7055 2.8748 11 6 9.0954 -2.2118 2.9143 12 6 9.5416 -2.3674 4.3694 13 6 10.9633 -2.8655 4.4083 14 1 11.4953 -3.0527 3.4873 15 6 11.5847 -3.0832 5.6198 16 7 10.9364 -2.8566 6.7414 17 14 13.3468 -3.7013 5.6680 18 1 14.2771 -2.5438 5.6805 19 1 13.5526 -4.5150 6.8931 20 1 13.6115 -4.5362 4.4688 21 16 2.4856 -1.4021 -0.0079 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3633 -0.8903 0.5134 24 1 -0.3632 0.8898 0.5143 25 1 4.7667 2.3012 -1.0276 26 1 4.0909 2.8787 0.5145 27 1 5.4435 1.7217 0.5133 28 1 5.9945 -0.1798 -0.5167 29 1 5.4054 -1.8594 -0.5173 30 1 5.2079 -1.6758 1.8981 31 1 7.2663 -2.5135 0.9152 32 1 7.8563 -0.8342 0.9155 33 1 7.5919 -0.7409 3.3789 34 1 7.0020 -2.4203 3.3794 35 1 9.1560 -3.1762 2.4101 36 1 9.7452 -1.4967 2.4099 37 1 9.4810 -1.4027 4.8733 38 1 8.8918 -3.0824 4.8742 39 1 11.3736 -3.0094 7.5937 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385784329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:30 Heat of formation + Delta-G solvation = -8.426570 kcal Electronic energy + Delta-G solvation = -17137.592930 eV Core-core repulsion = 14397.850807 eV Total energy + Delta-G solvation = -2739.742123 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94207 -38.06357 -36.12996 -34.56986 -33.50447 -30.95971 -30.05770 -28.81483 -26.29524 -24.58382 -23.59422 -22.87828 -21.76165 -19.86518 -18.90119 -18.42685 -17.04958 -16.56918 -16.35776 -16.15788 -15.43253 -15.29343 -15.03811 -14.42369 -14.39677 -14.12131 -13.90293 -13.71057 -13.43027 -13.33841 -13.00698 -12.86590 -12.83893 -12.66946 -12.30328 -12.29069 -12.10797 -11.99772 -11.36858 -11.30476 -11.03637 -10.63102 -10.55256 -10.29413 -9.57538 -9.40084 -8.19691 -6.31222 -0.30736 0.36527 0.74366 1.39722 1.41507 1.52554 1.75730 2.41059 3.13049 3.14370 3.25635 3.82624 4.01928 4.06571 4.14962 4.23854 4.51239 4.55072 4.56964 4.65001 4.65321 4.68061 4.75116 4.84189 4.85227 4.93235 5.02405 5.10792 5.24163 5.27941 5.36575 5.39132 5.55809 5.78678 5.87271 5.97706 6.25748 6.30976 6.77773 6.86787 7.38180 8.92257 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.044398 B = 0.002532 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.506757 B =11057.442283 C =11195.598750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.042 3.958 3 N -0.505 5.505 4 C 0.067 3.933 5 C -0.077 4.077 6 C -0.237 4.237 7 C 0.142 3.858 8 N -0.691 5.691 9 C 0.072 3.928 10 C -0.106 4.106 11 C -0.096 4.096 12 C 0.022 3.978 13 C -0.544 4.544 14 H 0.061 0.939 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.262 1.262 21 S 0.132 5.868 22 H 0.102 0.898 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.341 0.659 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.053 0.947 37 H -0.012 1.012 38 H -0.012 1.012 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.006 4.453 -17.820 27.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.235 4.235 3 N -0.221 5.221 4 C -0.065 4.065 5 C -0.136 4.136 6 C -0.358 4.358 7 C 0.011 3.989 8 N -0.322 5.322 9 C -0.057 4.057 10 C -0.144 4.144 11 C -0.134 4.134 12 C -0.015 4.015 13 C -0.582 4.582 14 H 0.079 0.921 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.186 1.186 21 S 0.387 5.613 22 H 0.120 0.880 23 H 0.118 0.882 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.068 0.932 30 H 0.159 0.841 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.302 4.524 -17.596 27.244 hybrid contribution 1.275 -0.450 0.399 1.410 sum -19.027 4.074 -17.196 25.968 Atomic orbital electron populations 1.20626 0.82826 1.05220 1.05126 1.27588 1.03153 0.90840 1.01956 1.66213 1.05059 1.32807 1.18006 1.20480 0.90269 0.95011 1.00760 1.20401 0.96025 0.93883 1.03339 1.25680 0.99993 0.95851 1.14238 1.20231 0.88052 1.00353 0.90236 1.60515 1.03531 1.55345 1.12843 1.21882 0.88868 0.98651 0.96264 1.21462 0.95850 1.00704 0.96370 1.21386 0.95127 0.99873 0.97020 1.19031 0.94829 0.94573 0.93106 1.21752 0.99671 1.44097 0.92641 0.92075 1.26040 1.02987 0.95805 0.95345 1.70105 1.39126 1.50337 0.98026 0.85426 0.79083 0.78528 0.77883 1.19717 1.20757 1.18610 1.83812 0.97137 1.11834 1.68480 0.88011 0.88217 0.89164 0.89683 0.91127 0.89886 0.88139 0.93180 0.84122 0.94387 0.90269 0.92717 0.93067 0.92990 0.92845 0.99357 0.99321 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.46 71.24 0.75 -0.09 16 2 C 0.04 0.80 7.39 88.52 0.65 1.45 16 3 N -0.50 -12.07 10.53 -179.40 -1.89 -13.96 16 4 C 0.07 1.55 6.74 41.52 0.28 1.83 16 5 C -0.08 -1.51 9.82 71.23 0.70 -0.81 16 6 C -0.24 -4.99 6.10 24.64 0.15 -4.84 16 7 C 0.14 2.79 5.61 85.56 0.48 3.27 16 8 N -0.69 -16.18 6.49 -517.92 -3.36 -19.55 16 9 C 0.07 1.84 5.68 86.31 0.49 2.33 16 10 C -0.11 -3.54 5.47 30.60 0.17 -3.37 16 11 C -0.10 -3.91 5.15 30.59 0.16 -3.76 16 12 C 0.02 1.17 4.97 29.84 0.15 1.32 16 13 C -0.54 -31.53 9.11 25.60 0.23 -31.30 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 16 N -0.94 -58.15 13.29 21.45 0.28 -57.87 16 17 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 S 0.13 2.33 23.18 -56.49 -1.31 1.02 16 22 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.08 1.64 7.35 -2.39 -0.02 1.62 16 28 H 0.10 1.82 7.43 -2.39 -0.02 1.80 16 29 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.34 7.96 8.72 -89.69 -0.78 7.18 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 38 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 39 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -68.66 339.87 0.66 -68.00 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.24 Total: 9.33 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 4.67 Total: -33.76 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -4.97 Total: -91.37 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.31 Total: 1.02 kcal Total: -68.66 0.66 -68.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385784329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.572 kcal (2) G-P(sol) polarization free energy of solvation -68.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds