Wall clock time and date at job start Mon Mar 30 2020 07:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29028 * 124.91855 * 2 1 4 4 C 1.31771 * 117.12878 * 180.02562 * 3 2 1 5 5 C 1.33644 * 114.50041 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.03938 * 180.02562 * 5 4 3 7 7 N 1.46908 * 109.47148 * 90.00134 * 6 5 4 8 8 C 1.46897 * 110.99334 * 66.04654 * 7 6 5 9 9 C 1.46890 * 111.00045 * 190.00045 * 7 6 5 10 10 C 1.53001 * 109.47092 * 169.99936 * 9 7 6 11 11 C 1.53002 * 109.47260 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46951 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46891 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00134 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00282 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99577 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00382 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47303 * 89.99962 * 17 15 13 19 19 H 1.48501 * 109.46945 * 210.00280 * 17 15 13 20 20 H 1.48504 * 109.46943 * 330.00056 * 17 15 13 21 21 S 1.70979 * 124.91569 * 180.02562 * 2 1 3 22 22 H 1.08997 * 109.47106 * 269.99927 * 1 2 3 23 23 H 1.08995 * 109.46993 * 30.00161 * 1 2 3 24 24 H 1.08999 * 109.46860 * 149.99764 * 1 2 3 25 25 H 1.08002 * 122.75353 * 180.27327 * 4 3 2 26 26 H 1.08996 * 109.47247 * 210.00530 * 6 5 4 27 27 H 1.09005 * 109.47214 * 330.00706 * 6 5 4 28 28 H 1.08995 * 109.47315 * 60.00319 * 8 7 6 29 29 H 1.09002 * 109.46406 * 180.02562 * 8 7 6 30 30 H 1.08999 * 109.47077 * 299.99733 * 8 7 6 31 31 H 1.09000 * 109.47308 * 290.00289 * 9 7 6 32 32 H 1.09006 * 109.47566 * 50.00141 * 9 7 6 33 33 H 1.09000 * 109.47333 * 300.00338 * 10 9 7 34 34 H 1.09005 * 109.46980 * 60.00448 * 10 9 7 35 35 H 1.09000 * 109.47314 * 300.00460 * 11 10 9 36 36 H 1.09000 * 109.47019 * 60.00063 * 11 10 9 37 37 H 1.09001 * 109.47503 * 299.99736 * 12 11 10 38 38 H 1.09005 * 109.47284 * 60.00562 * 12 11 10 39 39 H 0.97003 * 119.99866 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0004 6 6 5.3575 -0.8994 -0.0004 7 7 5.8196 -1.0615 1.3847 8 6 5.0749 -2.1284 2.0665 9 6 7.2655 -1.3162 1.4308 10 6 7.7523 -1.2316 2.8788 11 6 9.2582 -1.4976 2.9270 12 6 9.7448 -1.4136 4.3751 13 6 11.2280 -1.6762 4.4227 14 1 11.7693 -1.8828 3.5112 15 6 11.8940 -1.6527 5.6297 16 7 11.2347 -1.4016 6.7396 17 14 13.7326 -1.9775 5.6886 18 1 14.4668 -0.6952 5.5412 19 1 14.0834 -2.6023 6.9893 20 1 14.1091 -2.8935 4.5819 21 16 2.4856 -1.4020 -0.0006 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 4.2532 1.7001 0.0038 26 1 5.4058 -1.8594 -0.5143 27 1 5.9950 -0.1798 -0.5142 28 1 5.2216 -3.0696 1.5367 29 1 5.4366 -2.2269 3.0900 30 1 4.0136 -1.8801 2.0789 31 1 7.4719 -2.3109 1.0356 32 1 7.7852 -0.5710 0.8286 33 1 7.5458 -0.2370 3.2741 34 1 7.2326 -1.9769 3.4810 35 1 9.4643 -2.4924 2.5320 36 1 9.7782 -0.7526 2.3248 37 1 9.5388 -0.4189 4.7706 38 1 9.2248 -2.1589 4.9771 39 1 11.7031 -1.3854 7.5889 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385827608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:18 Heat of formation + Delta-G solvation = 26.067276 kcal Electronic energy + Delta-G solvation = -17364.038341 eV Core-core repulsion = 14625.791983 eV Total energy + Delta-G solvation = -2738.246358 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.92374 -37.89807 -34.56248 -32.88330 -31.99334 -29.89611 -28.38958 -26.73948 -25.23400 -23.97059 -22.69454 -20.78797 -20.02124 -19.39074 -18.21973 -16.21317 -15.94161 -15.68346 -15.22254 -14.85450 -14.54436 -14.36779 -14.21502 -13.74058 -13.17284 -12.84500 -12.64743 -12.54217 -12.28299 -12.18020 -11.78530 -11.62826 -11.40320 -11.25898 -10.96403 -10.52146 -10.47651 -10.36326 -9.84021 -9.60371 -9.46462 -9.26485 -9.03054 -8.92381 -8.36926 -8.31511 -5.96820 -3.99058 0.47752 1.10113 1.52594 2.64608 3.33328 3.39337 3.42642 3.91521 3.98747 4.48350 4.61627 4.78215 4.89190 5.08880 5.13559 5.18224 5.24963 5.38563 5.39502 5.50020 5.52167 5.56873 5.69057 5.85579 5.93537 6.00979 6.14052 6.21702 6.51105 6.80512 6.94815 6.99520 7.03315 7.23006 7.54205 7.72125 7.87996 8.04329 8.46946 9.08509 9.64734 11.14544 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.055700 B = 0.002604 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.573404 B =10750.387050 C =10804.352789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.040 3.960 3 N -0.474 5.474 4 C 0.052 3.948 5 C -0.206 4.206 6 C 0.130 3.870 7 N -0.537 5.537 8 C 0.016 3.984 9 C 0.057 3.943 10 C -0.114 4.114 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 S 0.110 5.890 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.177 0.823 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.025 0.975 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.757 -0.070 -15.777 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.237 4.237 3 N -0.189 5.189 4 C -0.099 4.099 5 C -0.328 4.328 6 C 0.000 4.000 7 N -0.261 5.261 8 C -0.133 4.133 9 C -0.070 4.070 10 C -0.151 4.151 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 S 0.364 5.636 22 H 0.104 0.896 23 H 0.107 0.893 24 H 0.098 0.902 25 H 0.194 0.806 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.043 0.957 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.304 -0.167 -15.347 26.257 hybrid contribution 1.820 -0.196 -0.199 1.841 sum -19.484 -0.363 -15.546 24.929 Atomic orbital electron populations 1.20430 0.85328 1.04050 1.03907 1.27025 1.01731 0.91099 1.03882 1.66294 1.05042 1.31560 1.16015 1.21698 0.90815 0.96013 1.01347 1.25838 0.99219 0.96117 1.11583 1.20453 0.88600 1.00154 0.90830 1.62057 1.05116 1.45355 1.13591 1.22549 0.98754 0.91693 1.00257 1.22279 0.85617 0.99538 0.99596 1.21681 0.97551 1.02220 0.93695 1.21598 0.92205 0.99787 1.01108 1.19088 0.95538 0.97155 0.89808 1.21287 0.93870 1.47747 0.92906 0.92781 1.25040 0.98240 0.95472 0.95826 1.69972 1.35784 1.49763 0.98042 0.86609 0.85763 0.78393 0.77320 1.20670 1.21248 1.19931 1.83975 0.98139 1.12740 1.68737 0.89589 0.89340 0.90229 0.80616 0.93653 0.88512 0.95663 0.90180 0.91788 0.94894 0.90775 0.91601 0.92510 0.93693 0.93428 0.96600 0.96759 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.46 36.01 0.38 -0.10 16 2 C 0.04 0.40 7.39 -13.46 -0.10 0.30 16 3 N -0.47 -5.72 10.54 -11.86 -0.13 -5.84 16 4 C 0.05 0.60 11.25 -19.19 -0.22 0.38 16 5 C -0.21 -2.23 5.31 -35.92 -0.19 -2.42 16 6 C 0.13 1.38 5.50 -4.97 -0.03 1.35 16 7 N -0.54 -6.88 4.75 -244.37 -1.16 -8.04 16 8 C 0.02 0.19 9.12 60.06 0.55 0.74 16 9 C 0.06 0.78 4.96 -3.83 -0.02 0.77 16 10 C -0.11 -1.94 5.15 -26.73 -0.14 -2.08 16 11 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 17 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 S 0.11 1.03 21.82 -107.50 -2.35 -1.31 16 22 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 26 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.10 0.92 7.93 -51.93 -0.41 0.51 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 1.05 6.30 -51.93 -0.33 0.72 16 30 H 0.06 0.74 6.12 -51.93 -0.32 0.42 16 31 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.98 6.47 -51.93 -0.34 0.64 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 333.47 15.07 5.03 5.03 Total: -1.00 -31.96 333.47 -9.76 -41.72 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -6.42 Total: -4.97 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -0.45 Total: -16.80 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: -0.55 Total: -40.56 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.35 Total: -1.31 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.96 -9.76 -41.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385827608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.788 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds