Wall clock time and date at job start Mon Mar 30 2020 07:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29028 * 124.91855 * 2 1 4 4 C 1.31771 * 117.12878 * 180.02562 * 3 2 1 5 5 C 1.33644 * 114.50041 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.03938 * 180.02562 * 5 4 3 7 7 N 1.46908 * 109.47148 * 90.00134 * 6 5 4 8 8 C 1.46897 * 110.99334 * 66.04654 * 7 6 5 9 9 C 1.46890 * 111.00045 * 190.00045 * 7 6 5 10 10 C 1.53001 * 109.47092 * 169.99936 * 9 7 6 11 11 C 1.53002 * 109.47260 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46951 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46891 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00134 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00282 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99577 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00382 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47303 * 89.99962 * 17 15 13 19 19 H 1.48501 * 109.46945 * 210.00280 * 17 15 13 20 20 H 1.48504 * 109.46943 * 330.00056 * 17 15 13 21 21 S 1.70979 * 124.91569 * 180.02562 * 2 1 3 22 22 H 1.08997 * 109.47106 * 269.99927 * 1 2 3 23 23 H 1.08995 * 109.46993 * 30.00161 * 1 2 3 24 24 H 1.08999 * 109.46860 * 149.99764 * 1 2 3 25 25 H 1.08002 * 122.75353 * 180.27327 * 4 3 2 26 26 H 1.08996 * 109.47247 * 210.00530 * 6 5 4 27 27 H 1.09005 * 109.47214 * 330.00706 * 6 5 4 28 28 H 1.08995 * 109.47315 * 60.00319 * 8 7 6 29 29 H 1.09002 * 109.46406 * 180.02562 * 8 7 6 30 30 H 1.08999 * 109.47077 * 299.99733 * 8 7 6 31 31 H 1.09000 * 109.47308 * 290.00289 * 9 7 6 32 32 H 1.09006 * 109.47566 * 50.00141 * 9 7 6 33 33 H 1.09000 * 109.47333 * 300.00338 * 10 9 7 34 34 H 1.09005 * 109.46980 * 60.00448 * 10 9 7 35 35 H 1.09000 * 109.47314 * 300.00460 * 11 10 9 36 36 H 1.09000 * 109.47019 * 60.00063 * 11 10 9 37 37 H 1.09001 * 109.47503 * 299.99736 * 12 11 10 38 38 H 1.09005 * 109.47284 * 60.00562 * 12 11 10 39 39 H 0.97003 * 119.99866 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0004 6 6 5.3575 -0.8994 -0.0004 7 7 5.8196 -1.0615 1.3847 8 6 5.0749 -2.1284 2.0665 9 6 7.2655 -1.3162 1.4308 10 6 7.7523 -1.2316 2.8788 11 6 9.2582 -1.4976 2.9270 12 6 9.7448 -1.4136 4.3751 13 6 11.2280 -1.6762 4.4227 14 1 11.7693 -1.8828 3.5112 15 6 11.8940 -1.6527 5.6297 16 7 11.2347 -1.4016 6.7396 17 14 13.7326 -1.9775 5.6886 18 1 14.4668 -0.6952 5.5412 19 1 14.0834 -2.6023 6.9893 20 1 14.1091 -2.8935 4.5819 21 16 2.4856 -1.4020 -0.0006 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 4.2532 1.7001 0.0038 26 1 5.4058 -1.8594 -0.5143 27 1 5.9950 -0.1798 -0.5142 28 1 5.2216 -3.0696 1.5367 29 1 5.4366 -2.2269 3.0900 30 1 4.0136 -1.8801 2.0789 31 1 7.4719 -2.3109 1.0356 32 1 7.7852 -0.5710 0.8286 33 1 7.5458 -0.2370 3.2741 34 1 7.2326 -1.9769 3.4810 35 1 9.4643 -2.4924 2.5320 36 1 9.7782 -0.7526 2.3248 37 1 9.5388 -0.4189 4.7706 38 1 9.2248 -2.1589 4.9771 39 1 11.7031 -1.3854 7.5889 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385827608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:18 Heat of formation + Delta-G solvation = 6.222719 kcal Electronic energy + Delta-G solvation = -17364.898866 eV Core-core repulsion = 14625.791983 eV Total energy + Delta-G solvation = -2739.106882 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71814 -38.93663 -36.27861 -34.42430 -33.21233 -30.97654 -29.75788 -27.82184 -26.61365 -25.07279 -23.91135 -22.19845 -21.59012 -20.17078 -18.98835 -18.41810 -16.97405 -16.68426 -16.43288 -16.24883 -15.71377 -15.45817 -15.32435 -14.51070 -14.43828 -14.07129 -13.79295 -13.69067 -13.38260 -13.21848 -13.07477 -12.96174 -12.81650 -12.61714 -12.28814 -12.25278 -12.04505 -11.94627 -11.33353 -11.26719 -11.02449 -10.61782 -10.55268 -10.23540 -9.71882 -9.32922 -8.19713 -6.31223 -0.28942 0.36821 0.75932 1.39620 1.41430 1.52461 1.83467 2.40984 2.98755 3.13060 3.28108 3.79935 4.00034 4.09572 4.17217 4.22328 4.36347 4.47717 4.57145 4.61623 4.64688 4.66966 4.68405 4.82087 4.83981 4.89326 5.02672 5.03412 5.22731 5.26612 5.28784 5.37468 5.56076 5.78288 5.87400 6.00924 6.03680 6.26145 6.77312 6.86759 7.38176 8.92264 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.055700 B = 0.002604 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.573404 B =10750.387050 C =10804.352789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.037 3.963 3 N -0.507 5.507 4 C 0.040 3.960 5 C -0.221 4.221 6 C 0.133 3.867 7 N -0.550 5.550 8 C 0.017 3.983 9 C 0.068 3.932 10 C -0.104 4.104 11 C -0.096 4.096 12 C 0.022 3.978 13 C -0.543 4.543 14 H 0.061 0.939 15 C -0.005 4.005 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.262 1.262 21 S 0.136 5.864 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.180 0.820 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.053 0.947 37 H -0.012 1.012 38 H -0.012 1.012 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.798 -0.809 -17.318 27.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.241 4.241 3 N -0.223 5.223 4 C -0.111 4.111 5 C -0.342 4.342 6 C 0.003 3.997 7 N -0.274 5.274 8 C -0.131 4.131 9 C -0.060 4.060 10 C -0.142 4.142 11 C -0.134 4.134 12 C -0.015 4.015 13 C -0.581 4.581 14 H 0.079 0.921 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.186 1.186 21 S 0.390 5.610 22 H 0.115 0.885 23 H 0.110 0.890 24 H 0.120 0.880 25 H 0.197 0.803 26 H 0.074 0.926 27 H 0.126 0.874 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.006 0.994 38 H 0.006 0.994 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.359 -0.911 -16.908 27.256 hybrid contribution 1.737 0.038 0.305 1.764 sum -19.622 -0.873 -16.603 25.718 Atomic orbital electron populations 1.20621 0.82986 1.05338 1.04947 1.27673 1.03242 0.90916 1.02233 1.66338 1.05462 1.32782 1.17685 1.21868 0.91052 0.96607 1.01593 1.25893 0.99868 0.96322 1.12114 1.20474 0.88702 1.01004 0.89492 1.61969 1.04454 1.45687 1.15295 1.22519 0.98874 0.92114 0.99586 1.22062 0.86526 1.00461 0.96902 1.21500 0.95144 1.01206 0.96335 1.21391 0.94521 1.00385 0.97072 1.19024 0.94822 0.94527 0.93095 1.21751 0.95177 1.47761 0.93414 0.92053 1.26043 1.03774 0.95014 0.95363 1.70114 1.38067 1.50666 0.98768 0.85424 0.79075 0.78690 0.77720 1.19725 1.20765 1.18592 1.83826 0.97113 1.11902 1.68114 0.88526 0.89001 0.87995 0.80288 0.92588 0.87432 0.94644 0.91589 0.91329 0.94030 0.89647 0.92904 0.93041 0.93015 0.92785 0.99404 0.99380 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.46 71.24 0.75 -0.08 16 2 C 0.04 0.67 7.39 88.52 0.65 1.33 16 3 N -0.51 -11.88 10.54 -191.44 -2.02 -13.90 16 4 C 0.04 0.89 11.25 83.66 0.94 1.83 16 5 C -0.22 -4.49 5.31 24.64 0.13 -4.36 16 6 C 0.13 2.57 5.50 85.56 0.47 3.04 16 7 N -0.55 -13.32 4.75 -927.06 -4.41 -17.73 16 8 C 0.02 0.40 9.12 127.69 1.16 1.57 16 9 C 0.07 1.76 4.96 86.31 0.43 2.19 16 10 C -0.10 -3.53 5.15 30.60 0.16 -3.38 16 11 C -0.10 -3.92 5.15 30.59 0.16 -3.76 16 12 C 0.02 1.21 4.97 29.85 0.15 1.36 16 13 C -0.54 -31.53 9.11 25.60 0.23 -31.30 16 14 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 15 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 16 N -0.94 -58.27 13.29 21.45 0.28 -57.99 16 17 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 21 S 0.14 2.32 21.82 -56.49 -1.23 1.08 16 22 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 26 H 0.06 0.98 8.12 -2.39 -0.02 0.96 16 27 H 0.11 1.83 7.93 -2.38 -0.02 1.81 16 28 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 1.70 6.30 -2.39 -0.02 1.69 16 30 H 0.07 1.51 6.12 -2.39 -0.01 1.49 16 31 H 0.04 1.02 8.12 -2.39 -0.02 1.01 16 32 H 0.09 2.05 7.93 -2.38 -0.02 2.03 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 1.79 6.47 -2.38 -0.02 1.77 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 39 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -68.89 333.47 1.35 -67.53 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 1.01 Total: 5.52 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 5.69 Total: -31.36 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -6.14 Total: -89.61 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.23 Total: 1.08 kcal Total: -68.89 1.35 -67.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385827608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.756 kcal (2) G-P(sol) polarization free energy of solvation -68.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds