Wall clock time and date at job start Mon Mar 30 2020 07:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29021 * 124.91577 * 2 1 4 4 C 1.31787 * 117.12723 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75233 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46866 * 305.02631 * 5 4 3 7 7 N 1.46902 * 109.46626 * 180.02562 * 6 5 4 8 8 C 1.46905 * 110.99800 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47234 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.46860 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46860 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.47237 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99576 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00139 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99998 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00010 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47324 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47101 * 120.00428 * 16 14 12 19 19 H 1.48505 * 109.47088 * 239.99875 * 16 14 12 20 20 C 1.33639 * 114.49738 * 0.23162 * 4 3 2 21 21 S 1.70979 * 124.91810 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.46911 * 90.00130 * 1 2 3 23 23 H 1.09004 * 109.47467 * 210.00086 * 1 2 3 24 24 H 1.09000 * 109.47576 * 330.00327 * 1 2 3 25 25 H 1.08993 * 109.47512 * 185.02753 * 5 4 3 26 26 H 1.09000 * 109.47247 * 65.02462 * 5 4 3 27 27 H 1.09000 * 109.47050 * 299.99952 * 6 5 4 28 28 H 1.09001 * 109.46801 * 60.00064 * 6 5 4 29 29 H 1.00891 * 111.00138 * 56.04633 * 7 6 5 30 30 H 1.08993 * 109.47004 * 300.00108 * 8 7 6 31 31 H 1.09002 * 109.47091 * 59.99861 * 8 7 6 32 32 H 1.09001 * 109.47170 * 299.99770 * 9 8 7 33 33 H 1.08989 * 109.46804 * 59.99859 * 9 8 7 34 34 H 1.09004 * 109.47471 * 299.99817 * 10 9 8 35 35 H 1.09002 * 109.47344 * 60.00066 * 10 9 8 36 36 H 1.09001 * 109.47170 * 299.99690 * 11 10 9 37 37 H 1.09002 * 109.47089 * 59.99910 * 11 10 9 38 38 H 0.97001 * 119.99899 * 179.97438 * 15 14 12 39 39 H 1.08002 * 126.03735 * 179.76609 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2333 2.9495 -1.1820 7 7 5.1886 4.0655 -1.1828 8 6 4.9333 4.9761 -2.3070 9 6 5.9453 6.1232 -2.2741 10 6 5.6789 7.0719 -3.4445 11 6 6.6912 8.2186 -3.4119 12 6 6.4294 9.1528 -4.5652 13 1 5.6215 8.9491 -5.2523 14 6 7.2205 10.2679 -4.7424 15 7 8.2041 10.5162 -3.9053 16 14 6.8964 11.4254 -6.1723 17 1 5.7421 10.9258 -6.9618 18 1 6.5893 12.7817 -5.6514 19 1 8.0998 11.4893 -7.0400 20 6 3.9354 -0.4006 -0.0039 21 16 2.4857 -1.4020 0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 5.5448 1.6353 -0.0894 26 1 4.4369 2.5834 0.9312 27 1 4.3272 2.3907 -2.1132 28 1 3.2192 3.3388 -1.0925 29 1 6.1392 3.7278 -1.2001 30 1 5.0319 4.4310 -3.2456 31 1 3.9241 5.3799 -2.2256 32 1 5.8462 6.6683 -1.3353 33 1 6.9545 5.7198 -2.3552 34 1 5.7777 6.5272 -4.3835 35 1 4.6696 7.4753 -3.3628 36 1 6.5930 8.7635 -2.4730 37 1 7.7004 7.8149 -3.4938 38 1 8.7609 11.3006 -4.0303 39 1 4.9546 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385827915.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:14 Heat of formation + Delta-G solvation = 11.406262 kcal Electronic energy + Delta-G solvation = -16820.549532 eV Core-core repulsion = 14081.667425 eV Total energy + Delta-G solvation = -2738.882107 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.26172 -36.91515 -34.57559 -33.27410 -32.09757 -30.23322 -28.60471 -27.45194 -24.58894 -23.28702 -22.11923 -21.32883 -20.00578 -19.90958 -17.78401 -16.28761 -16.04864 -15.77910 -15.27525 -14.66014 -14.45365 -14.36838 -14.07191 -13.78842 -13.24351 -13.19370 -12.68399 -12.54771 -12.37305 -11.87475 -11.85929 -11.62428 -11.25496 -11.13773 -10.95264 -10.49705 -10.43186 -10.38420 -9.93420 -9.73466 -9.58429 -9.22499 -9.01479 -8.93209 -8.35628 -8.29483 -5.94763 -3.96700 0.37913 1.02476 1.39432 2.47020 3.33985 3.41126 3.45689 3.70955 4.20628 4.50528 4.61899 4.83352 4.90318 4.96195 5.04426 5.11879 5.28445 5.37254 5.40686 5.48209 5.50372 5.59128 5.79242 5.94584 5.97084 5.99664 6.21474 6.31013 6.56597 6.87854 7.01003 7.08202 7.27493 7.45230 7.46675 7.75164 7.91191 8.06816 8.49806 9.11096 9.66979 11.16646 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.050843 B = 0.002151 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.582361 B =13011.287816 C =13332.197577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.052 3.948 3 N -0.467 5.467 4 C 0.079 3.921 5 C -0.043 4.043 6 C 0.068 3.932 7 N -0.692 5.692 8 C 0.060 3.940 9 C -0.115 4.115 10 C -0.109 4.109 11 C 0.020 3.980 12 C -0.518 4.518 13 H 0.054 0.946 14 C 0.054 3.946 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.262 4.262 21 S 0.105 5.895 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.024 0.976 28 H 0.080 0.920 29 H 0.338 0.662 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.014 0.986 38 H 0.259 0.741 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.302 -26.646 9.607 30.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.227 4.227 3 N -0.182 5.182 4 C -0.053 4.053 5 C -0.084 4.084 6 C -0.062 4.062 7 N -0.322 5.322 8 C -0.068 4.068 9 C -0.153 4.153 10 C -0.147 4.147 11 C -0.017 4.017 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.401 4.401 21 S 0.359 5.641 22 H 0.105 0.895 23 H 0.099 0.901 24 H 0.109 0.891 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.155 0.845 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.008 -26.723 10.088 31.386 hybrid contribution 0.948 0.779 -1.540 1.969 sum -12.060 -25.944 8.548 29.860 Atomic orbital electron populations 1.20467 0.85085 1.04301 1.04049 1.27099 1.01859 0.90821 1.02882 1.66095 1.04576 1.31461 1.16070 1.20289 0.90144 0.94215 1.00643 1.20187 0.95159 0.92142 1.00895 1.21825 0.97970 0.91009 0.95405 1.60508 1.06902 1.18108 1.46705 1.22064 1.00680 0.93783 0.90303 1.21636 0.97491 0.95632 1.00558 1.21591 1.00619 0.97075 0.95446 1.19103 0.93678 0.91907 0.96990 1.21335 1.14882 1.07865 1.11594 0.92726 1.25044 0.95256 0.97932 0.96412 1.69983 1.19057 1.27694 1.36851 0.86552 0.78084 0.80878 0.82578 1.19780 1.21030 1.21064 1.26827 1.03103 0.95687 1.14455 1.83947 0.98209 1.13068 1.68895 0.89457 0.90092 0.89083 0.90319 0.89025 0.95759 0.90143 0.84493 0.95643 0.91233 0.91608 0.92765 0.93716 0.93424 0.96572 0.96733 0.93130 0.80587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.46 36.01 0.38 -0.06 16 2 C 0.05 0.46 7.39 -13.46 -0.10 0.36 16 3 N -0.47 -5.31 10.34 -8.06 -0.08 -5.40 16 4 C 0.08 0.83 6.08 -84.22 -0.51 0.32 16 5 C -0.04 -0.43 5.97 -27.88 -0.17 -0.60 16 6 C 0.07 0.80 5.59 -3.82 -0.02 0.78 16 7 N -0.69 -9.11 6.50 -113.77 -0.74 -9.85 16 8 C 0.06 0.91 5.68 -3.82 -0.02 0.89 16 9 C -0.12 -2.04 5.47 -26.73 -0.15 -2.19 16 10 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 13 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 16 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 C -0.26 -2.24 11.07 29.12 0.32 -1.92 16 21 S 0.10 0.78 23.18 -107.50 -2.49 -1.71 16 22 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 29 H 0.34 4.00 8.73 -39.30 -0.34 3.66 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.94 8.14 -51.94 -0.42 0.52 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -32.48 341.37 -10.05 -42.53 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.64 Total: -2.49 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -0.96 Total: -18.46 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.09 Total: -42.13 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.49 Total: -1.71 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.48 -10.05 -42.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385827915.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.939 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds