Wall clock time and date at job start Mon Mar 30 2020 07:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29021 * 124.91577 * 2 1 4 4 C 1.31787 * 117.12723 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75233 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46866 * 305.02631 * 5 4 3 7 7 N 1.46902 * 109.46626 * 180.02562 * 6 5 4 8 8 C 1.46905 * 110.99800 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47234 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.46860 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46860 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.47237 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99576 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00139 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99998 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00010 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47324 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47101 * 120.00428 * 16 14 12 19 19 H 1.48505 * 109.47088 * 239.99875 * 16 14 12 20 20 C 1.33639 * 114.49738 * 0.23162 * 4 3 2 21 21 S 1.70979 * 124.91810 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.46911 * 90.00130 * 1 2 3 23 23 H 1.09004 * 109.47467 * 210.00086 * 1 2 3 24 24 H 1.09000 * 109.47576 * 330.00327 * 1 2 3 25 25 H 1.08993 * 109.47512 * 185.02753 * 5 4 3 26 26 H 1.09000 * 109.47247 * 65.02462 * 5 4 3 27 27 H 1.09000 * 109.47050 * 299.99952 * 6 5 4 28 28 H 1.09001 * 109.46801 * 60.00064 * 6 5 4 29 29 H 1.00891 * 111.00138 * 56.04633 * 7 6 5 30 30 H 1.08993 * 109.47004 * 300.00108 * 8 7 6 31 31 H 1.09002 * 109.47091 * 59.99861 * 8 7 6 32 32 H 1.09001 * 109.47170 * 299.99770 * 9 8 7 33 33 H 1.08989 * 109.46804 * 59.99859 * 9 8 7 34 34 H 1.09004 * 109.47471 * 299.99817 * 10 9 8 35 35 H 1.09002 * 109.47344 * 60.00066 * 10 9 8 36 36 H 1.09001 * 109.47170 * 299.99690 * 11 10 9 37 37 H 1.09002 * 109.47089 * 59.99910 * 11 10 9 38 38 H 0.97001 * 119.99899 * 179.97438 * 15 14 12 39 39 H 1.08002 * 126.03735 * 179.76609 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2333 2.9495 -1.1820 7 7 5.1886 4.0655 -1.1828 8 6 4.9333 4.9761 -2.3070 9 6 5.9453 6.1232 -2.2741 10 6 5.6789 7.0719 -3.4445 11 6 6.6912 8.2186 -3.4119 12 6 6.4294 9.1528 -4.5652 13 1 5.6215 8.9491 -5.2523 14 6 7.2205 10.2679 -4.7424 15 7 8.2041 10.5162 -3.9053 16 14 6.8964 11.4254 -6.1723 17 1 5.7421 10.9258 -6.9618 18 1 6.5893 12.7817 -5.6514 19 1 8.0998 11.4893 -7.0400 20 6 3.9354 -0.4006 -0.0039 21 16 2.4857 -1.4020 0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 5.5448 1.6353 -0.0894 26 1 4.4369 2.5834 0.9312 27 1 4.3272 2.3907 -2.1132 28 1 3.2192 3.3388 -1.0925 29 1 6.1392 3.7278 -1.2001 30 1 5.0319 4.4310 -3.2456 31 1 3.9241 5.3799 -2.2256 32 1 5.8462 6.6683 -1.3353 33 1 6.9545 5.7198 -2.3552 34 1 5.7777 6.5272 -4.3835 35 1 4.6696 7.4753 -3.3628 36 1 6.5930 8.7635 -2.4730 37 1 7.7004 7.8149 -3.4938 38 1 8.7609 11.3006 -4.0303 39 1 4.9546 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385827915.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:14 Heat of formation + Delta-G solvation = -9.295623 kcal Electronic energy + Delta-G solvation = -16821.447233 eV Core-core repulsion = 14081.667425 eV Total energy + Delta-G solvation = -2739.779808 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93793 -38.10315 -36.18032 -34.61839 -33.54416 -31.37230 -29.57947 -28.71411 -26.23987 -24.29735 -22.99008 -22.85773 -21.66880 -20.64332 -18.50033 -18.38806 -17.24561 -16.58116 -16.44661 -16.17375 -15.68056 -15.46898 -15.05916 -14.55523 -14.35062 -14.28872 -13.99009 -13.62408 -13.51427 -13.14307 -13.01707 -12.88298 -12.70046 -12.51514 -12.30027 -12.19439 -12.09800 -11.88587 -11.37674 -11.30154 -10.98802 -10.59034 -10.56093 -10.36961 -9.62575 -9.42168 -8.20159 -6.31564 -0.24792 0.43720 0.76265 1.39195 1.39894 1.53447 1.77034 2.40724 3.06306 3.12368 3.26312 3.94480 4.05065 4.12081 4.20009 4.29276 4.34219 4.45913 4.54327 4.60472 4.63663 4.65010 4.66048 4.81320 4.91897 4.97123 5.07496 5.10700 5.23299 5.27204 5.29154 5.35282 5.54943 5.77810 5.86660 6.01812 6.25832 6.46915 6.81333 6.85993 7.37617 8.91939 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.050843 B = 0.002151 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.582361 B =13011.287816 C =13332.197577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.036 3.964 3 N -0.505 5.505 4 C 0.054 3.946 5 C -0.036 4.036 6 C 0.076 3.924 7 N -0.695 5.695 8 C 0.071 3.929 9 C -0.104 4.104 10 C -0.098 4.098 11 C 0.022 3.978 12 C -0.544 4.544 13 H 0.059 0.941 14 C -0.004 4.004 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.265 4.265 21 S 0.146 5.854 22 H 0.096 0.904 23 H 0.103 0.897 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.025 0.975 28 H 0.062 0.938 29 H 0.347 0.653 30 H 0.032 0.968 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.049 0.951 36 H -0.011 1.011 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.034 -28.091 8.923 32.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.242 4.242 3 N -0.222 5.222 4 C -0.078 4.078 5 C -0.076 4.076 6 C -0.053 4.053 7 N -0.327 5.327 8 C -0.058 4.058 9 C -0.142 4.142 10 C -0.136 4.136 11 C -0.015 4.015 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.202 4.202 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.202 1.202 20 C -0.404 4.404 21 S 0.401 5.599 22 H 0.115 0.885 23 H 0.122 0.878 24 H 0.104 0.896 25 H 0.117 0.883 26 H 0.100 0.900 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.166 0.834 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.008 0.992 37 H 0.010 0.990 38 H 0.072 0.928 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -13.750 -28.192 9.411 32.748 hybrid contribution 1.176 1.160 -1.284 2.092 sum -12.574 -27.032 8.128 30.902 Atomic orbital electron populations 1.20611 0.83268 1.05202 1.04900 1.27635 1.03233 0.91140 1.02186 1.66107 1.05322 1.33094 1.17654 1.20367 0.90133 0.94951 1.02332 1.20099 0.96338 0.91824 0.99361 1.21719 0.96572 0.90638 0.96389 1.60431 1.07858 1.18674 1.45720 1.21832 0.99342 0.93237 0.91366 1.21455 0.98604 0.95798 0.98365 1.21405 0.98861 0.95963 0.97358 1.19032 0.94032 0.93273 0.95149 1.21769 1.15227 1.08789 1.12406 0.92273 1.26039 0.94839 0.99838 0.99471 1.70114 1.20009 1.28520 1.38808 0.85364 0.78415 0.78279 0.78766 1.18614 1.20295 1.20212 1.27156 1.04725 0.95449 1.13064 1.83762 0.96879 1.11539 1.67745 0.88527 0.87809 0.89569 0.88292 0.90018 0.95712 0.91975 0.83414 0.94980 0.91628 0.92570 0.92442 0.93114 0.93257 0.99218 0.99031 0.92758 0.78495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.46 71.24 0.75 -0.04 16 2 C 0.04 0.60 7.39 88.52 0.65 1.25 16 3 N -0.51 -11.34 10.34 -179.40 -1.86 -13.20 16 4 C 0.05 1.08 6.08 41.52 0.25 1.34 16 5 C -0.04 -0.69 5.97 29.85 0.18 -0.51 16 6 C 0.08 1.77 5.59 86.31 0.48 2.25 16 7 N -0.70 -17.69 6.50 -513.86 -3.34 -21.03 16 8 C 0.07 2.09 5.68 86.30 0.49 2.58 16 9 C -0.10 -3.67 5.47 30.59 0.17 -3.51 16 10 C -0.10 -4.18 5.15 30.59 0.16 -4.02 16 11 C 0.02 1.22 4.97 29.85 0.15 1.37 16 12 C -0.54 -32.11 9.11 25.60 0.23 -31.88 16 13 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 14 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 15 N -0.93 -58.37 13.29 21.45 0.28 -58.08 16 16 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 17 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 C -0.27 -4.07 11.07 66.78 0.74 -3.33 16 21 S 0.15 1.90 23.18 -56.49 -1.31 0.59 16 22 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 24 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.10 1.44 8.03 -2.39 -0.02 1.42 16 26 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 1.67 8.08 -2.39 -0.02 1.65 16 29 H 0.35 7.75 8.73 -89.70 -0.78 6.97 16 30 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 2.09 8.14 -2.38 -0.02 2.08 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 37 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 38 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.20 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -70.08 341.37 0.75 -69.34 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.23 Total: 9.34 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 4.71 Total: -34.31 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -4.91 Total: -92.31 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.31 Total: 0.59 kcal Total: -70.08 0.75 -69.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385827915.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.044 kcal (2) G-P(sol) polarization free energy of solvation -70.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds