Wall clock time and date at job start Mon Mar 30 2020 07:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.33648 * 122.75482 * 2 1 4 4 S 1.76196 * 107.92705 * 179.76003 * 3 2 1 5 5 C 1.70979 * 90.28178 * 0.28389 * 4 3 2 6 6 C 1.50699 * 124.91559 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47247 * 164.69424 * 6 5 4 8 8 C 1.52997 * 109.47265 * 284.69610 * 6 5 4 9 9 N 1.46906 * 109.47140 * 44.69445 * 6 5 4 10 10 C 1.46902 * 110.99927 * 154.99767 * 9 6 5 11 11 C 1.53000 * 109.47087 * 179.97438 * 10 9 6 12 12 C 1.52995 * 109.47247 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47409 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47168 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00270 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99732 * 180.02562 * 14 13 12 17 17 N 1.31523 * 120.00180 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00153 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46937 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47371 * 120.00062 * 18 16 14 21 21 H 1.48497 * 109.47170 * 240.00222 * 18 16 14 22 22 N 1.29027 * 110.17217 * 359.71191 * 5 4 3 23 23 H 1.09008 * 109.47072 * 270.02441 * 1 2 3 24 24 H 1.09008 * 109.47060 * 30.02087 * 1 2 3 25 25 H 1.09000 * 109.47371 * 150.02510 * 1 2 3 26 26 H 1.07997 * 126.03075 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.47140 * 59.99748 * 8 6 5 28 28 H 1.09001 * 109.47375 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.47045 * 299.99841 * 8 6 5 30 30 H 1.00895 * 110.99792 * 278.95436 * 9 6 5 31 31 H 1.08994 * 109.47343 * 300.00302 * 10 9 6 32 32 H 1.09008 * 109.46954 * 60.00660 * 10 9 6 33 33 H 1.08994 * 109.47524 * 300.00495 * 11 10 9 34 34 H 1.09008 * 109.46436 * 60.00647 * 11 10 9 35 35 H 1.09004 * 109.47312 * 300.00483 * 12 11 10 36 36 H 1.09003 * 109.47194 * 60.00588 * 12 11 10 37 37 H 1.09004 * 109.46985 * 300.00325 * 13 12 11 38 38 H 1.09003 * 109.46755 * 59.99961 * 13 12 11 39 39 H 0.96993 * 119.99949 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0070 5 6 3.5039 -0.9819 0.0008 6 6 4.4834 -2.1272 0.0020 7 1 3.9651 -3.0483 0.2686 8 6 5.0990 -2.2732 -1.3909 9 7 5.5456 -1.8619 0.9815 10 6 6.1538 -3.1142 1.4506 11 6 7.2534 -2.7980 2.4664 12 6 7.8864 -4.1021 2.9554 13 6 8.9855 -3.7860 3.9716 14 6 9.6094 -5.0706 4.4528 15 1 9.2575 -6.0178 4.0717 16 6 10.6295 -5.0366 5.3798 17 7 11.0578 -3.8831 5.8444 18 14 11.4034 -6.6289 5.9758 19 1 10.7467 -7.7797 5.3052 20 1 12.8524 -6.6270 5.6510 21 1 11.2257 -6.7458 7.4454 22 7 2.2198 -1.1084 0.0004 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8899 -0.5142 25 1 -0.3634 -0.8902 -0.5134 26 1 1.8392 2.1308 -0.0004 27 1 5.6173 -1.3521 -1.6575 28 1 5.8078 -3.1013 -1.3899 29 1 4.3109 -2.4701 -2.1177 30 1 6.2437 -1.2420 0.5989 31 1 5.3912 -3.7344 1.9214 32 1 6.5848 -3.6484 0.6037 33 1 8.0159 -2.1779 1.9952 34 1 6.8228 -2.2636 3.3133 35 1 7.1235 -4.7219 3.4268 36 1 8.3168 -4.6369 2.1087 37 1 9.7484 -3.1661 3.5006 38 1 8.5547 -3.2514 4.8182 39 1 11.7752 -3.8593 6.4967 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385858384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:31 Heat of formation + Delta-G solvation = 15.199675 kcal Electronic energy + Delta-G solvation = -17275.096096 eV Core-core repulsion = 14536.378484 eV Total energy + Delta-G solvation = -2738.717612 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.05138 -37.54497 -34.72938 -32.82444 -31.75574 -30.12803 -27.82272 -27.57583 -25.48213 -24.09982 -21.58793 -21.55131 -19.98952 -19.74583 -17.76750 -16.31232 -15.99133 -15.43952 -15.27033 -14.80376 -14.48012 -14.30440 -13.83411 -13.45347 -13.20858 -12.84138 -12.70110 -12.57715 -12.32037 -12.17665 -11.70476 -11.61374 -11.40518 -11.37131 -11.01374 -10.59704 -10.47644 -10.42977 -9.77721 -9.62833 -9.52833 -9.26365 -8.99950 -8.81959 -8.56692 -8.31876 -5.96921 -3.99011 0.58100 1.26606 1.67359 2.61500 3.32581 3.39918 3.44144 3.60854 4.30197 4.48897 4.66692 4.78928 4.91629 4.99109 5.06673 5.30365 5.33255 5.38771 5.40564 5.45451 5.50684 5.55911 5.66071 5.77820 5.89782 6.03414 6.14042 6.21691 6.49446 6.81089 6.87264 6.98286 7.20348 7.24574 7.62335 7.72420 7.87864 8.04321 8.47061 9.08820 9.64901 11.14485 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041230 B = 0.002659 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.960689 B =10526.542145 C =10610.573982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.067 3.933 3 C -0.278 4.278 4 S 0.141 5.859 5 C 0.077 3.923 6 C 0.155 3.845 7 H 0.108 0.892 8 C -0.178 4.178 9 N -0.685 5.685 10 C 0.062 3.938 11 C -0.116 4.116 12 C -0.108 4.108 13 C 0.021 3.979 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.478 5.478 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.174 0.826 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.343 0.657 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.923 9.979 -15.710 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.066 4.066 3 C -0.417 4.417 4 S 0.396 5.604 5 C -0.202 4.202 6 C 0.041 3.959 7 H 0.126 0.874 8 C -0.238 4.238 9 N -0.316 5.316 10 C -0.066 4.066 11 C -0.154 4.154 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.193 5.193 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.191 0.809 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.162 0.838 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.487 10.118 -15.038 25.185 hybrid contribution 0.097 -0.948 -0.293 0.997 sum -17.390 9.170 -15.331 24.931 Atomic orbital electron populations 1.20342 0.87290 1.03126 1.02943 1.20272 0.98159 0.86569 1.01553 1.26823 0.95741 1.03848 1.15286 1.83966 1.06638 1.02841 1.66907 1.27008 0.93732 0.98080 1.01373 1.19990 0.90469 0.93823 0.91594 0.87383 1.22515 1.01706 1.02929 0.96639 1.60495 1.15212 1.16682 1.39258 1.22133 0.97238 0.89609 0.97624 1.21648 0.95995 0.99726 0.98024 1.21586 0.98950 0.94642 0.99487 1.19098 0.92483 0.96756 0.93318 1.21325 1.17711 0.93125 1.23568 0.92714 1.25041 0.96971 0.96074 0.96508 1.69980 1.28418 1.24284 1.30893 0.86556 0.79095 0.83913 0.78564 1.19767 1.21050 1.21029 1.66079 1.04509 1.31721 1.17038 0.90660 0.90885 0.90677 0.80897 0.91968 0.90884 0.91426 0.83836 0.90857 0.94894 0.92606 0.91557 0.93383 0.93605 0.96724 0.96594 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.31 36.00 0.37 -0.23 16 2 C 0.07 0.73 6.74 -84.22 -0.57 0.17 16 3 C -0.28 -2.69 11.13 29.12 0.32 -2.37 16 4 S 0.14 1.44 22.96 -107.50 -2.47 -1.03 16 5 C 0.08 0.92 6.32 -13.46 -0.09 0.84 16 6 C 0.16 1.72 3.10 -68.86 -0.21 1.50 16 7 H 0.11 1.27 7.80 -51.93 -0.40 0.86 16 8 C -0.18 -1.59 9.14 37.16 0.34 -1.25 16 9 N -0.69 -8.30 6.04 -107.95 -0.65 -8.95 16 10 C 0.06 0.84 5.48 -3.82 -0.02 0.82 16 11 C -0.12 -1.93 5.47 -26.73 -0.15 -2.08 16 12 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 14 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 18 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 N -0.48 -6.20 10.53 -8.06 -0.08 -6.29 16 23 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 24 H 0.07 0.41 8.12 -51.92 -0.42 -0.02 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 28 H 0.07 0.63 7.45 -51.93 -0.39 0.24 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.34 3.79 8.47 -39.29 -0.33 3.46 16 31 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 32 H 0.03 0.41 7.44 -51.92 -0.39 0.03 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 338.91 15.07 5.11 5.11 Total: -1.00 -31.78 338.91 -9.61 -41.39 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.54 Total: -2.22 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -0.69 Total: -18.29 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.00 Total: -41.83 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.47 Total: -1.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.78 -9.61 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385858384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.588 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds