Wall clock time and date at job start Mon Mar 30 2020 07:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.33648 * 122.75482 * 2 1 4 4 S 1.76196 * 107.92705 * 179.76003 * 3 2 1 5 5 C 1.70979 * 90.28178 * 0.28389 * 4 3 2 6 6 C 1.50699 * 124.91559 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47247 * 164.69424 * 6 5 4 8 8 C 1.52997 * 109.47265 * 284.69610 * 6 5 4 9 9 N 1.46906 * 109.47140 * 44.69445 * 6 5 4 10 10 C 1.46902 * 110.99927 * 154.99767 * 9 6 5 11 11 C 1.53000 * 109.47087 * 179.97438 * 10 9 6 12 12 C 1.52995 * 109.47247 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47409 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47168 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00270 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99732 * 180.02562 * 14 13 12 17 17 N 1.31523 * 120.00180 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00153 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46937 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47371 * 120.00062 * 18 16 14 21 21 H 1.48497 * 109.47170 * 240.00222 * 18 16 14 22 22 N 1.29027 * 110.17217 * 359.71191 * 5 4 3 23 23 H 1.09008 * 109.47072 * 270.02441 * 1 2 3 24 24 H 1.09008 * 109.47060 * 30.02087 * 1 2 3 25 25 H 1.09000 * 109.47371 * 150.02510 * 1 2 3 26 26 H 1.07997 * 126.03075 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.47140 * 59.99748 * 8 6 5 28 28 H 1.09001 * 109.47375 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.47045 * 299.99841 * 8 6 5 30 30 H 1.00895 * 110.99792 * 278.95436 * 9 6 5 31 31 H 1.08994 * 109.47343 * 300.00302 * 10 9 6 32 32 H 1.09008 * 109.46954 * 60.00660 * 10 9 6 33 33 H 1.08994 * 109.47524 * 300.00495 * 11 10 9 34 34 H 1.09008 * 109.46436 * 60.00647 * 11 10 9 35 35 H 1.09004 * 109.47312 * 300.00483 * 12 11 10 36 36 H 1.09003 * 109.47194 * 60.00588 * 12 11 10 37 37 H 1.09004 * 109.46985 * 300.00325 * 13 12 11 38 38 H 1.09003 * 109.46755 * 59.99961 * 13 12 11 39 39 H 0.96993 * 119.99949 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0070 5 6 3.5039 -0.9819 0.0008 6 6 4.4834 -2.1272 0.0020 7 1 3.9651 -3.0483 0.2686 8 6 5.0990 -2.2732 -1.3909 9 7 5.5456 -1.8619 0.9815 10 6 6.1538 -3.1142 1.4506 11 6 7.2534 -2.7980 2.4664 12 6 7.8864 -4.1021 2.9554 13 6 8.9855 -3.7860 3.9716 14 6 9.6094 -5.0706 4.4528 15 1 9.2575 -6.0178 4.0717 16 6 10.6295 -5.0366 5.3798 17 7 11.0578 -3.8831 5.8444 18 14 11.4034 -6.6289 5.9758 19 1 10.7467 -7.7797 5.3052 20 1 12.8524 -6.6270 5.6510 21 1 11.2257 -6.7458 7.4454 22 7 2.2198 -1.1084 0.0004 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8899 -0.5142 25 1 -0.3634 -0.8902 -0.5134 26 1 1.8392 2.1308 -0.0004 27 1 5.6173 -1.3521 -1.6575 28 1 5.8078 -3.1013 -1.3899 29 1 4.3109 -2.4701 -2.1177 30 1 6.2437 -1.2420 0.5989 31 1 5.3912 -3.7344 1.9214 32 1 6.5848 -3.6484 0.6037 33 1 8.0159 -2.1779 1.9952 34 1 6.8228 -2.2636 3.3133 35 1 7.1235 -4.7219 3.4268 36 1 8.3168 -4.6369 2.1087 37 1 9.7484 -3.1661 3.5006 38 1 8.5547 -3.2514 4.8182 39 1 11.7752 -3.8593 6.4967 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385858384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:30 Heat of formation + Delta-G solvation = -4.857041 kcal Electronic energy + Delta-G solvation = -17275.965821 eV Core-core repulsion = 14536.378484 eV Total energy + Delta-G solvation = -2739.587337 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.86136 -38.55084 -36.35624 -34.55043 -32.90971 -31.32360 -29.08507 -28.50192 -26.56724 -25.63002 -23.05852 -22.47523 -21.62940 -20.56871 -18.63265 -18.36977 -17.04042 -16.53864 -16.50227 -16.13047 -15.72179 -15.39891 -14.82265 -14.47411 -14.34591 -13.96446 -13.89770 -13.62666 -13.36827 -13.27508 -13.07007 -12.90213 -12.79563 -12.44007 -12.30607 -12.16961 -12.13556 -12.09739 -11.36459 -11.28991 -11.00667 -10.61797 -10.55064 -10.33872 -9.61907 -9.49762 -8.19370 -6.30493 -0.22102 0.48591 0.87866 1.39963 1.40403 1.53826 1.80104 2.41296 2.75234 3.13511 3.42676 3.90783 3.97832 4.12503 4.22081 4.26589 4.30815 4.40094 4.52251 4.60996 4.71404 4.77518 4.79131 4.85398 4.87144 4.93741 4.99346 5.11218 5.25766 5.28844 5.36624 5.38457 5.56865 5.79999 5.87506 5.92137 6.26749 6.32551 6.82055 6.87660 7.38850 8.92733 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041230 B = 0.002659 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.960689 B =10526.542145 C =10610.573982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.043 3.957 3 C -0.273 4.273 4 S 0.153 5.847 5 C 0.056 3.944 6 C 0.158 3.842 7 H 0.098 0.902 8 C -0.171 4.171 9 N -0.691 5.691 10 C 0.075 3.925 11 C -0.106 4.106 12 C -0.096 4.096 13 C 0.022 3.978 14 C -0.542 4.542 15 H 0.060 0.940 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.261 1.261 20 H -0.277 1.277 21 H -0.279 1.279 22 N -0.505 5.505 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.201 0.799 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.349 0.651 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.054 0.946 37 H -0.009 1.009 38 H -0.013 1.013 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.507 9.724 -16.674 26.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 C -0.412 4.412 4 S 0.409 5.591 5 C -0.223 4.223 6 C 0.045 3.955 7 H 0.116 0.884 8 C -0.230 4.230 9 N -0.323 5.323 10 C -0.053 4.053 11 C -0.144 4.144 12 C -0.135 4.135 13 C -0.015 4.015 14 C -0.580 4.580 15 H 0.078 0.922 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.204 1.204 22 N -0.222 5.222 23 H 0.097 0.903 24 H 0.115 0.885 25 H 0.089 0.911 26 H 0.218 0.782 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.169 0.831 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.010 0.990 38 H 0.006 0.994 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.085 9.864 -16.019 26.095 hybrid contribution 0.256 -0.781 0.017 0.822 sum -17.829 9.082 -16.002 25.621 Atomic orbital electron populations 1.20423 0.85414 1.04118 1.03489 1.20777 0.99590 0.86473 1.02037 1.27208 0.95217 1.04897 1.13852 1.83861 1.07225 1.01638 1.66421 1.27129 0.93800 0.99122 1.02210 1.19949 0.89933 0.93313 0.92326 0.88375 1.22449 1.01765 1.03546 0.95288 1.60379 1.15554 1.16132 1.40282 1.21880 0.96051 0.90269 0.97150 1.21460 0.96914 0.97508 0.98479 1.21388 0.97255 0.96660 0.98160 1.19032 0.93469 0.95355 0.93659 1.21780 1.18186 0.94126 1.23947 0.92183 1.26022 0.97558 0.99924 0.96629 1.70112 1.29078 1.26813 1.31544 0.85390 0.78178 0.79380 0.78051 1.18528 1.20270 1.20438 1.66103 1.05159 1.33165 1.17737 0.90262 0.88499 0.91109 0.78157 0.91175 0.90344 0.91164 0.83096 0.91137 0.93398 0.92324 0.92909 0.93249 0.92736 0.99036 0.99416 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.31 71.23 0.73 -0.32 16 2 C 0.04 0.89 6.74 41.52 0.28 1.17 16 3 C -0.27 -4.79 11.13 66.78 0.74 -4.04 16 4 S 0.15 2.94 22.96 -56.49 -1.30 1.64 16 5 C 0.06 1.29 6.32 88.52 0.56 1.85 16 6 C 0.16 3.36 3.10 44.17 0.14 3.50 16 7 H 0.10 2.26 7.80 -2.39 -0.02 2.24 16 8 C -0.17 -2.80 9.14 71.98 0.66 -2.14 16 9 N -0.69 -16.04 6.04 -495.43 -2.99 -19.03 16 10 C 0.08 1.93 5.48 86.30 0.47 2.40 16 11 C -0.11 -3.48 5.47 30.59 0.17 -3.31 16 12 C -0.10 -3.93 5.15 30.59 0.16 -3.77 16 13 C 0.02 1.18 4.97 29.85 0.15 1.33 16 14 C -0.54 -31.44 9.11 25.60 0.23 -31.20 16 15 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 16 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 17 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16 18 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 N -0.51 -12.83 10.53 -179.40 -1.89 -14.72 16 23 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.10 0.85 8.12 -2.38 -0.02 0.83 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 27 H 0.07 1.03 8.13 -2.39 -0.02 1.02 16 28 H 0.08 1.20 7.45 -2.39 -0.02 1.18 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.35 7.28 8.47 -89.70 -0.76 6.52 16 31 H 0.07 1.87 8.05 -2.39 -0.02 1.85 16 32 H 0.05 1.10 7.44 -2.38 -0.02 1.09 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -68.56 338.91 1.15 -67.41 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.26 Total: 9.79 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 4.75 Total: -34.31 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -4.59 Total: -91.38 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.30 Total: 1.64 kcal Total: -68.56 1.15 -67.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385858384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.553 kcal (2) G-P(sol) polarization free energy of solvation -68.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds