Wall clock time and date at job start Mon Mar 30 2020 07:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33643 * 122.74824 * 2 1 4 4 S 1.76199 * 107.92569 * 179.97438 * 3 2 1 5 5 C 1.70974 * 90.28083 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91459 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.46858 * 195.02341 * 6 5 4 8 8 C 1.52995 * 109.47198 * 75.02093 * 6 5 4 9 9 N 1.46904 * 109.47155 * 315.02132 * 6 5 4 10 10 C 1.46891 * 111.00320 * 204.99967 * 9 6 5 11 11 C 1.52998 * 109.47298 * 179.97438 * 10 9 6 12 12 C 1.52999 * 109.47155 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47155 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47274 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99937 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00155 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00200 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 120.00271 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46739 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47299 * 119.99424 * 18 16 14 21 21 H 1.48491 * 109.47207 * 240.00327 * 18 16 14 22 22 N 1.29023 * 110.17232 * 0.02562 * 5 4 3 23 23 H 1.08997 * 109.47208 * 90.02421 * 1 2 3 24 24 H 1.09005 * 109.46733 * 210.02327 * 1 2 3 25 25 H 1.08999 * 109.47451 * 330.02592 * 1 2 3 26 26 H 1.08007 * 126.03527 * 0.24051 * 3 2 1 27 27 H 1.09008 * 109.47362 * 180.02562 * 8 6 5 28 28 H 1.09005 * 109.47252 * 299.99985 * 8 6 5 29 29 H 1.09001 * 109.47355 * 60.00006 * 8 6 5 30 30 H 1.00905 * 110.99685 * 81.04201 * 9 6 5 31 31 H 1.09004 * 109.47294 * 300.00138 * 10 9 6 32 32 H 1.09001 * 109.46939 * 60.00036 * 10 9 6 33 33 H 1.09000 * 109.46930 * 299.99788 * 11 10 9 34 34 H 1.08997 * 109.47540 * 59.99974 * 11 10 9 35 35 H 1.09004 * 109.47074 * 299.99922 * 12 11 10 36 36 H 1.09001 * 109.47303 * 59.99909 * 12 11 10 37 37 H 1.08995 * 109.47385 * 299.99405 * 13 12 11 38 38 H 1.09001 * 109.47090 * 59.99778 * 13 12 11 39 39 H 0.97000 * 120.00242 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5040 -0.9817 0.0002 6 6 4.4836 -2.1269 -0.0001 7 1 3.9655 -3.0481 -0.2668 8 6 5.0983 -2.2726 1.3934 9 7 5.5464 -1.8619 -0.9789 10 6 6.1551 -3.1141 -1.4472 11 6 7.2544 -2.7981 -2.4633 12 6 7.8879 -4.1024 -2.9515 13 6 8.9876 -3.7863 -3.9671 14 6 9.6120 -5.0710 -4.4476 15 1 9.2599 -6.0182 -4.0663 16 6 10.6334 -5.0371 -5.3730 17 7 11.0626 -3.8838 -5.8369 18 14 11.4080 -6.6295 -5.9681 19 1 10.7510 -7.7802 -5.2976 20 1 11.2323 -6.7464 -7.4380 21 1 12.8564 -6.6279 -5.6411 22 7 2.2200 -1.1083 -0.0010 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 1.8390 2.1309 0.0037 27 1 5.8072 -3.1006 1.3931 28 1 5.6164 -1.3513 1.6600 29 1 4.3097 -2.4692 2.1197 30 1 6.2442 -1.2417 -0.5960 31 1 6.5854 -3.6481 -0.6000 32 1 5.3928 -3.7346 -1.9185 33 1 6.8236 -2.2644 -3.3105 34 1 8.0168 -2.1774 -1.9926 35 1 8.3186 -4.6365 -2.1045 36 1 7.1253 -4.7227 -3.4225 37 1 8.5574 -3.2521 -4.8142 38 1 9.7501 -3.1662 -3.4958 39 1 11.7809 -3.8600 -6.4883 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385858386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:34 Heat of formation + Delta-G solvation = 15.230921 kcal Electronic energy + Delta-G solvation = -17274.973072 eV Core-core repulsion = 14536.256815 eV Total energy + Delta-G solvation = -2738.716257 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.05290 -37.54532 -34.72961 -32.82544 -31.75659 -30.12882 -27.82278 -27.57567 -25.48201 -24.09973 -21.58771 -21.55177 -19.98965 -19.74664 -17.76764 -16.31180 -15.99133 -15.43921 -15.27174 -14.80281 -14.48033 -14.30470 -13.83408 -13.45514 -13.20785 -12.84204 -12.70137 -12.57790 -12.32008 -12.17672 -11.70518 -11.61397 -11.40560 -11.37147 -11.01345 -10.59703 -10.47609 -10.42931 -9.77704 -9.62829 -9.52876 -9.26361 -8.99908 -8.82046 -8.56617 -8.31935 -5.96888 -3.98994 0.58094 1.26559 1.67304 2.61501 3.32609 3.39923 3.44146 3.60833 4.30192 4.48893 4.66628 4.78883 4.91571 4.99074 5.06604 5.30308 5.33278 5.38830 5.40551 5.45484 5.50674 5.55911 5.66033 5.77770 5.89787 6.03406 6.14091 6.21724 6.49479 6.81146 6.87335 6.98334 7.20364 7.24611 7.62341 7.72441 7.87908 8.04319 8.47078 9.08818 9.64944 11.14510 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041242 B = 0.002659 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.756490 B =10528.613702 C =10611.770993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.067 3.933 3 C -0.277 4.277 4 S 0.140 5.860 5 C 0.077 3.923 6 C 0.155 3.845 7 H 0.108 0.892 8 C -0.178 4.178 9 N -0.685 5.685 10 C 0.062 3.938 11 C -0.116 4.116 12 C -0.108 4.108 13 C 0.021 3.979 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.478 5.478 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.174 0.826 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.343 0.657 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.938 9.982 15.709 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.066 4.066 3 C -0.417 4.417 4 S 0.396 5.604 5 C -0.202 4.202 6 C 0.041 3.959 7 H 0.126 0.874 8 C -0.238 4.238 9 N -0.316 5.316 10 C -0.066 4.066 11 C -0.154 4.154 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 N -0.193 5.193 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.191 0.809 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.162 0.838 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.501 10.121 15.045 25.200 hybrid contribution 0.098 -0.948 0.289 0.996 sum -17.403 9.173 15.334 24.942 Atomic orbital electron populations 1.20341 0.87288 1.03123 1.02946 1.20270 0.98160 0.86569 1.01553 1.26823 0.95729 1.03848 1.15285 1.83964 1.06650 1.02853 1.66918 1.27005 0.93730 0.98077 1.01367 1.19990 0.90464 0.93827 0.91594 0.87382 1.22518 1.01712 1.02931 0.96635 1.60493 1.15180 1.16667 1.39301 1.22130 0.97241 0.89612 0.97623 1.21647 0.95998 0.99725 0.98021 1.21586 0.98940 0.94641 0.99496 1.19096 0.92478 0.96757 0.93325 1.21325 1.17643 0.93126 1.23639 0.92717 1.25038 0.96968 0.96069 0.96507 1.69976 1.28352 1.24290 1.30954 0.86559 0.79099 0.83922 0.78563 1.19767 1.21021 1.21055 1.66074 1.04509 1.31728 1.17037 0.90660 0.90676 0.90887 0.80894 0.90880 0.91969 0.91425 0.83836 0.94890 0.90864 0.91555 0.92608 0.93609 0.93380 0.96596 0.96721 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.31 36.00 0.37 -0.23 16 2 C 0.07 0.73 6.74 -84.22 -0.57 0.17 16 3 C -0.28 -2.69 11.13 29.12 0.32 -2.37 16 4 S 0.14 1.44 22.96 -107.50 -2.47 -1.03 16 5 C 0.08 0.92 6.32 -13.46 -0.09 0.84 16 6 C 0.16 1.72 3.10 -68.86 -0.21 1.50 16 7 H 0.11 1.27 7.80 -51.93 -0.41 0.86 16 8 C -0.18 -1.59 9.14 37.15 0.34 -1.25 16 9 N -0.69 -8.30 6.04 -107.96 -0.65 -8.95 16 10 C 0.06 0.84 5.48 -3.83 -0.02 0.82 16 11 C -0.12 -1.93 5.47 -26.73 -0.15 -2.08 16 12 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 14 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 15 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 N -0.48 -6.20 10.53 -8.06 -0.08 -6.29 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 26 H 0.17 1.20 8.06 -52.48 -0.42 0.77 16 27 H 0.07 0.63 7.45 -51.92 -0.39 0.24 16 28 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.34 3.79 8.47 -39.29 -0.33 3.46 16 31 H 0.03 0.41 7.44 -51.93 -0.39 0.03 16 32 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 338.92 15.07 5.11 5.11 Total: -1.00 -31.78 338.92 -9.61 -41.39 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.54 Total: -2.22 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -0.69 Total: -18.29 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.00 Total: -41.84 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.47 Total: -1.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.78 -9.61 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385858386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.623 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds