Wall clock time and date at job start Mon Mar 30 2020 07:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33643 * 122.74824 * 2 1 4 4 S 1.76199 * 107.92569 * 179.97438 * 3 2 1 5 5 C 1.70974 * 90.28083 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91459 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.46858 * 195.02341 * 6 5 4 8 8 C 1.52995 * 109.47198 * 75.02093 * 6 5 4 9 9 N 1.46904 * 109.47155 * 315.02132 * 6 5 4 10 10 C 1.46891 * 111.00320 * 204.99967 * 9 6 5 11 11 C 1.52998 * 109.47298 * 179.97438 * 10 9 6 12 12 C 1.52999 * 109.47155 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47155 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47274 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99937 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00155 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00200 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 120.00271 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46739 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47299 * 119.99424 * 18 16 14 21 21 H 1.48491 * 109.47207 * 240.00327 * 18 16 14 22 22 N 1.29023 * 110.17232 * 0.02562 * 5 4 3 23 23 H 1.08997 * 109.47208 * 90.02421 * 1 2 3 24 24 H 1.09005 * 109.46733 * 210.02327 * 1 2 3 25 25 H 1.08999 * 109.47451 * 330.02592 * 1 2 3 26 26 H 1.08007 * 126.03527 * 0.24051 * 3 2 1 27 27 H 1.09008 * 109.47362 * 180.02562 * 8 6 5 28 28 H 1.09005 * 109.47252 * 299.99985 * 8 6 5 29 29 H 1.09001 * 109.47355 * 60.00006 * 8 6 5 30 30 H 1.00905 * 110.99685 * 81.04201 * 9 6 5 31 31 H 1.09004 * 109.47294 * 300.00138 * 10 9 6 32 32 H 1.09001 * 109.46939 * 60.00036 * 10 9 6 33 33 H 1.09000 * 109.46930 * 299.99788 * 11 10 9 34 34 H 1.08997 * 109.47540 * 59.99974 * 11 10 9 35 35 H 1.09004 * 109.47074 * 299.99922 * 12 11 10 36 36 H 1.09001 * 109.47303 * 59.99909 * 12 11 10 37 37 H 1.08995 * 109.47385 * 299.99405 * 13 12 11 38 38 H 1.09001 * 109.47090 * 59.99778 * 13 12 11 39 39 H 0.97000 * 120.00242 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5040 -0.9817 0.0002 6 6 4.4836 -2.1269 -0.0001 7 1 3.9655 -3.0481 -0.2668 8 6 5.0983 -2.2726 1.3934 9 7 5.5464 -1.8619 -0.9789 10 6 6.1551 -3.1141 -1.4472 11 6 7.2544 -2.7981 -2.4633 12 6 7.8879 -4.1024 -2.9515 13 6 8.9876 -3.7863 -3.9671 14 6 9.6120 -5.0710 -4.4476 15 1 9.2599 -6.0182 -4.0663 16 6 10.6334 -5.0371 -5.3730 17 7 11.0626 -3.8838 -5.8369 18 14 11.4080 -6.6295 -5.9681 19 1 10.7510 -7.7802 -5.2976 20 1 11.2323 -6.7464 -7.4380 21 1 12.8564 -6.6279 -5.6411 22 7 2.2200 -1.1083 -0.0010 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 1.8390 2.1309 0.0037 27 1 5.8072 -3.1006 1.3931 28 1 5.6164 -1.3513 1.6600 29 1 4.3097 -2.4692 2.1197 30 1 6.2442 -1.2417 -0.5960 31 1 6.5854 -3.6481 -0.6000 32 1 5.3928 -3.7346 -1.9185 33 1 6.8236 -2.2644 -3.3105 34 1 8.0168 -2.1774 -1.9926 35 1 8.3186 -4.6365 -2.1045 36 1 7.1253 -4.7227 -3.4225 37 1 8.5574 -3.2521 -4.8142 38 1 9.7501 -3.1662 -3.4958 39 1 11.7809 -3.8600 -6.4883 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385858386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:34 Heat of formation + Delta-G solvation = -4.830589 kcal Electronic energy + Delta-G solvation = -17275.843005 eV Core-core repulsion = 14536.256815 eV Total energy + Delta-G solvation = -2739.586190 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.86269 -38.55125 -36.35666 -34.55142 -32.91053 -31.32422 -29.08521 -28.50164 -26.56672 -25.63018 -23.05827 -22.47571 -21.62982 -20.56934 -18.63234 -18.36944 -17.04038 -16.53874 -16.50240 -16.13163 -15.72057 -15.39952 -14.82288 -14.47415 -14.34686 -13.96384 -13.89807 -13.62669 -13.36861 -13.27523 -13.07070 -12.90245 -12.79522 -12.44079 -12.30697 -12.16961 -12.13523 -12.09666 -11.36450 -11.28988 -11.00668 -10.61745 -10.55127 -10.33894 -9.61992 -9.49678 -8.19341 -6.30482 -0.22092 0.48573 0.87832 1.40009 1.40367 1.53808 1.80121 2.41278 2.75238 3.13560 3.42662 3.90745 3.97800 4.12470 4.22041 4.26634 4.30805 4.40058 4.52244 4.60986 4.71407 4.77572 4.79100 4.85403 4.87155 4.93749 4.99326 5.11152 5.25794 5.28855 5.36639 5.38475 5.56865 5.80025 5.87529 5.92205 6.26755 6.32556 6.82080 6.87652 7.38885 8.92753 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041242 B = 0.002659 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.756490 B =10528.613702 C =10611.770993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.043 3.957 3 C -0.273 4.273 4 S 0.153 5.847 5 C 0.056 3.944 6 C 0.158 3.842 7 H 0.098 0.902 8 C -0.171 4.171 9 N -0.691 5.691 10 C 0.075 3.925 11 C -0.106 4.106 12 C -0.096 4.096 13 C 0.022 3.978 14 C -0.542 4.542 15 H 0.060 0.940 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.965 3.035 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.277 1.277 22 N -0.505 5.505 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.201 0.799 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.349 0.651 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.049 0.951 37 H -0.013 1.013 38 H -0.009 1.009 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.521 9.729 16.674 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 C -0.412 4.412 4 S 0.408 5.592 5 C -0.223 4.223 6 C 0.045 3.955 7 H 0.116 0.884 8 C -0.231 4.231 9 N -0.323 5.323 10 C -0.054 4.054 11 C -0.144 4.144 12 C -0.135 4.135 13 C -0.015 4.015 14 C -0.580 4.580 15 H 0.078 0.922 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.204 1.204 21 H -0.203 1.203 22 N -0.222 5.222 23 H 0.097 0.903 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.218 0.782 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.169 0.831 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.006 0.994 38 H 0.010 0.990 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.099 9.868 16.026 26.111 hybrid contribution 0.257 -0.782 -0.022 0.823 sum -17.842 9.086 16.005 25.633 Atomic orbital electron populations 1.20422 0.85412 1.04118 1.03489 1.20775 0.99591 0.86473 1.02037 1.27209 0.95208 1.04899 1.13852 1.83859 1.07232 1.01645 1.66428 1.27126 0.93800 0.99123 1.02207 1.19949 0.89926 0.93316 0.92328 0.88376 1.22451 1.01772 1.03549 0.95282 1.60377 1.15523 1.16117 1.40327 1.21878 0.96052 0.90272 0.97149 1.21459 0.96915 0.97506 0.98478 1.21388 0.97246 0.96659 0.98167 1.19030 0.93468 0.95356 0.93661 1.21780 1.18120 0.94126 1.24019 0.92187 1.26019 0.97557 0.99919 0.96625 1.70109 1.29011 1.26819 1.31605 0.85393 0.78177 0.79386 0.78057 1.18529 1.20423 1.20281 1.66098 1.05159 1.33174 1.17736 0.90267 0.91106 0.88499 0.78152 0.90341 0.91175 0.91161 0.83095 0.93393 0.91145 0.92906 0.92329 0.92743 0.93242 0.99416 0.99034 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.31 71.23 0.73 -0.32 16 2 C 0.04 0.89 6.74 41.52 0.28 1.17 16 3 C -0.27 -4.78 11.13 66.78 0.74 -4.04 16 4 S 0.15 2.94 22.96 -56.49 -1.30 1.64 16 5 C 0.06 1.29 6.32 88.52 0.56 1.85 16 6 C 0.16 3.36 3.10 44.17 0.14 3.50 16 7 H 0.10 2.26 7.80 -2.39 -0.02 2.24 16 8 C -0.17 -2.80 9.14 71.98 0.66 -2.14 16 9 N -0.69 -16.04 6.04 -495.47 -2.99 -19.03 16 10 C 0.08 1.93 5.48 86.30 0.47 2.40 16 11 C -0.11 -3.48 5.47 30.59 0.17 -3.31 16 12 C -0.10 -3.93 5.15 30.59 0.16 -3.77 16 13 C 0.02 1.18 4.97 29.85 0.15 1.33 16 14 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 15 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 16 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 17 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 18 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 N -0.51 -12.83 10.53 -179.40 -1.89 -14.72 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.10 0.84 8.12 -2.39 -0.02 0.83 16 26 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 27 H 0.08 1.20 7.45 -2.38 -0.02 1.18 16 28 H 0.07 1.03 8.13 -2.38 -0.02 1.01 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.35 7.28 8.47 -89.69 -0.76 6.52 16 31 H 0.05 1.10 7.44 -2.39 -0.02 1.09 16 32 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 38 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -68.56 338.92 1.14 -67.42 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.26 Total: 9.79 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 4.75 Total: -34.31 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -4.60 Total: -91.38 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.30 Total: 1.64 kcal Total: -68.56 1.14 -67.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385858386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.590 kcal (2) G-P(sol) polarization free energy of solvation -68.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds