Wall clock time and date at job start Mon Mar 30 2020 07:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 C 1.53001 * 109.46830 * 179.97438 * 7 6 5 9 9 N 1.46904 * 109.46663 * 180.02562 * 8 7 6 10 10 C 1.46904 * 110.99784 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.46640 * 324.99552 * 10 9 8 12 12 C 1.52990 * 109.47364 * 85.00117 * 10 9 8 13 13 C 1.53001 * 109.47076 * 205.00292 * 10 9 8 14 14 C 1.50700 * 109.47420 * 64.99625 * 13 10 9 15 15 H 1.08003 * 119.99587 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00486 * 180.02562 * 14 13 10 17 17 N 1.31511 * 120.00537 * 180.02562 * 16 14 13 18 18 Si 1.86810 * 119.99672 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46878 * 89.99772 * 18 16 14 20 20 H 1.48495 * 109.47204 * 209.99757 * 18 16 14 21 21 H 1.48496 * 109.46978 * 330.00072 * 18 16 14 22 22 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 23 23 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 26 26 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 27 27 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 28 28 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 29 29 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 30 30 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 31 31 H 1.08998 * 109.47655 * 299.99904 * 8 7 6 32 32 H 1.08996 * 109.46711 * 60.00762 * 8 7 6 33 33 H 1.00902 * 110.99977 * 56.05164 * 9 8 7 34 34 H 1.08997 * 109.47251 * 60.00005 * 12 10 9 35 35 H 1.09001 * 109.47318 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.47481 * 300.00027 * 12 10 9 37 37 H 1.08995 * 109.46982 * 184.99943 * 13 10 9 38 38 H 1.08996 * 109.46875 * 304.99918 * 13 10 9 39 39 H 0.97003 * 120.00326 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 6 5.8083 -3.6697 -1.4659 9 7 6.1255 -4.0343 -2.8532 10 6 7.0799 -5.1501 -2.8991 11 1 7.7792 -5.0644 -2.0674 12 6 6.3216 -6.4746 -2.7936 13 6 7.8509 -5.1077 -4.2200 14 6 8.6940 -3.8595 -4.2697 15 1 8.6814 -3.1661 -3.4418 16 6 9.4812 -3.6028 -5.3720 17 7 10.2173 -2.5138 -5.4153 18 14 9.5023 -4.8018 -6.8044 19 1 8.4474 -4.4264 -7.7798 20 1 10.8296 -4.7561 -7.4687 21 1 9.2466 -6.1761 -6.3032 22 7 2.2199 -1.1083 -0.0064 23 1 -0.3633 -0.0052 1.0277 24 1 -0.3633 -0.8874 -0.5184 25 1 -0.3633 0.8926 -0.5093 26 1 1.8392 2.1308 0.0005 27 1 5.3966 -1.8274 0.5002 28 1 4.0439 -2.9843 0.4958 29 1 3.9003 -2.8071 -1.9733 30 1 5.2530 -1.6502 -1.9690 31 1 6.7213 -3.3696 -0.9517 32 1 5.3690 -4.5269 -0.9559 33 1 6.4745 -3.2382 -3.3655 34 1 5.6223 -6.5602 -3.6253 35 1 7.0298 -7.3025 -2.8272 36 1 5.7723 -6.5050 -1.8526 37 1 8.4947 -5.9841 -4.2932 38 1 7.1466 -5.1037 -5.0518 39 1 10.7709 -2.3330 -6.1910 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393780093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:13 Heat of formation + Delta-G solvation = -2.612522 kcal Electronic energy + Delta-G solvation = -17533.110018 eV Core-core repulsion = 14793.620011 eV Total energy + Delta-G solvation = -2739.490007 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.85183 -38.56263 -36.03897 -34.57774 -32.98051 -31.07994 -29.63537 -28.53555 -27.19510 -24.71644 -23.41303 -22.21936 -20.98723 -20.65488 -18.95610 -18.57527 -16.88739 -16.64273 -16.31937 -16.11405 -15.80947 -15.41098 -14.68112 -14.58452 -14.27910 -14.14288 -13.80672 -13.53339 -13.41896 -13.29941 -13.20392 -12.94230 -12.54371 -12.52324 -12.22252 -12.20760 -12.04294 -11.77680 -11.65138 -11.26776 -11.19934 -10.75301 -10.62633 -10.37847 -9.63179 -9.20188 -8.28002 -6.30953 -0.27147 0.42330 0.80782 1.37821 1.38503 1.50374 1.78247 2.37365 3.02550 3.08437 3.45782 3.88482 4.01756 4.23770 4.26232 4.29181 4.34841 4.44532 4.53761 4.62600 4.68464 4.73729 4.76994 4.80085 4.85987 4.99132 5.02305 5.13931 5.17413 5.24392 5.25525 5.36998 5.40515 5.52095 5.69035 6.24622 6.39981 6.59807 6.75352 6.78692 7.33588 8.87971 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025063 B = 0.003407 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.935469 B = 8216.460930 C = 8789.047124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.043 3.957 3 C -0.265 4.265 4 S 0.124 5.876 5 C 0.047 3.953 6 C -0.038 4.038 7 C -0.097 4.097 8 C 0.064 3.936 9 N -0.690 5.690 10 C 0.097 3.903 11 H 0.023 0.977 12 C -0.130 4.130 13 C -0.014 4.014 14 C -0.523 4.523 15 H 0.035 0.965 16 C 0.008 3.992 17 N -0.949 5.949 18 Si 0.948 3.052 19 H -0.270 1.270 20 H -0.287 1.287 21 H -0.248 1.248 22 N -0.499 5.499 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.203 0.797 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.081 0.919 33 H 0.341 0.659 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.024 0.976 38 H 0.021 0.979 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.179 3.933 12.531 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.404 4.404 4 S 0.379 5.621 5 C -0.231 4.231 6 C -0.079 4.079 7 C -0.137 4.137 8 C -0.065 4.065 9 N -0.322 5.322 10 C -0.013 4.013 11 H 0.041 0.959 12 C -0.188 4.188 13 C -0.052 4.052 14 C -0.561 4.561 15 H 0.053 0.947 16 C -0.189 4.189 17 N -0.589 5.589 18 Si 0.772 3.228 19 H -0.195 1.195 20 H -0.213 1.213 21 H -0.172 1.172 22 N -0.215 5.215 23 H 0.104 0.896 24 H 0.087 0.913 25 H 0.113 0.887 26 H 0.220 0.780 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.100 0.900 33 H 0.160 0.840 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.876 3.642 12.373 21.240 hybrid contribution 0.479 0.473 -0.547 0.867 sum -16.397 4.114 11.826 20.631 Atomic orbital electron populations 1.20437 0.85242 1.04030 1.03752 1.20847 0.99728 0.86466 1.01790 1.27159 0.94575 1.04971 1.13657 1.84107 1.08038 1.02459 1.67485 1.27217 0.94096 0.99204 1.02584 1.20254 0.95720 0.93910 0.98003 1.21385 0.99434 0.97644 0.95206 1.21951 0.96900 0.97810 0.89865 1.60655 1.46747 1.11475 1.13316 1.21345 0.91444 0.91901 0.96563 0.95859 1.21743 0.99933 0.95221 1.01855 1.19729 0.94850 0.95556 0.95044 1.21349 1.24999 1.06603 1.03162 0.94689 1.25927 0.94639 0.96910 1.01448 1.70058 1.29549 1.27913 1.31414 0.85692 0.77362 0.80654 0.79105 1.19507 1.21283 1.17166 1.66166 1.05135 1.32930 1.17299 0.89607 0.91281 0.88713 0.78029 0.88292 0.87929 0.91633 0.92864 0.96022 0.90040 0.84032 0.92656 0.92190 0.92087 0.95804 0.96075 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.31 71.24 0.73 -0.37 16 2 C 0.04 0.93 6.74 41.52 0.28 1.21 16 3 C -0.26 -4.95 11.13 66.78 0.74 -4.21 16 4 S 0.12 2.62 23.18 -56.49 -1.31 1.31 16 5 C 0.05 1.14 6.64 88.52 0.59 1.73 16 6 C -0.04 -0.85 5.80 29.85 0.17 -0.67 16 7 C -0.10 -2.64 5.46 30.59 0.17 -2.47 16 8 C 0.06 1.94 5.48 86.30 0.47 2.41 16 9 N -0.69 -25.89 6.31 -491.57 -3.10 -28.99 16 10 C 0.10 3.81 2.59 44.91 0.12 3.92 16 11 H 0.02 0.96 7.80 -2.39 -0.02 0.94 16 12 C -0.13 -4.09 9.41 71.98 0.68 -3.41 16 13 C -0.01 -0.66 3.64 29.85 0.11 -0.55 16 14 C -0.52 -29.38 8.67 25.60 0.22 -29.16 16 15 H 0.03 2.14 7.73 -2.91 -0.02 2.12 16 16 C 0.01 0.45 5.47 84.65 0.46 0.92 16 17 N -0.95 -58.88 13.96 21.44 0.30 -58.58 16 18 Si 0.95 44.41 27.47 68.60 1.88 46.29 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 22 N -0.50 -13.17 10.53 -179.40 -1.89 -15.06 16 23 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.09 0.96 8.12 -2.38 -0.02 0.94 16 26 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 27 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.02 0.68 8.06 -2.39 -0.02 0.66 16 32 H 0.08 2.19 7.44 -2.39 -0.02 2.18 16 33 H 0.34 14.64 7.21 -89.69 -0.65 13.99 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 1.68 7.45 -2.39 -0.02 1.66 16 37 H 0.02 1.09 7.20 -2.39 -0.02 1.08 16 38 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 39 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -66.32 333.63 0.95 -65.37 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.32 Total: 20.30 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 4.75 Total: -30.65 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -4.69 Total: -102.62 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.29 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.31 Total: 1.31 kcal Total: -66.32 0.95 -65.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393780093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.757 kcal (2) G-P(sol) polarization free energy of solvation -66.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds