Wall clock time and date at job start Mon Mar 30 2020 07:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 C 1.53001 * 109.46830 * 179.97438 * 7 6 5 9 9 N 1.46904 * 109.46663 * 180.02562 * 8 7 6 10 10 C 1.46904 * 110.99784 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47142 * 34.99493 * 10 9 8 12 12 C 1.53009 * 109.46899 * 274.99961 * 10 9 8 13 13 C 1.53001 * 109.47191 * 155.00285 * 10 9 8 14 14 C 1.50694 * 109.46709 * 294.99520 * 13 10 9 15 15 H 1.08001 * 120.00503 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99605 * 179.97438 * 14 13 10 17 17 N 1.31507 * 120.00025 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99755 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47219 * 90.00257 * 18 16 14 20 20 H 1.48500 * 109.47171 * 210.00083 * 18 16 14 21 21 H 1.48504 * 109.47409 * 330.00054 * 18 16 14 22 22 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 23 23 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 26 26 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 27 27 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 28 28 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 29 29 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 30 30 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 31 31 H 1.08998 * 109.47655 * 299.99904 * 8 7 6 32 32 H 1.08996 * 109.46711 * 60.00762 * 8 7 6 33 33 H 1.00898 * 111.00380 * 303.95134 * 9 8 7 34 34 H 1.09001 * 109.46462 * 59.99968 * 12 10 9 35 35 H 1.08992 * 109.46827 * 179.97438 * 12 10 9 36 36 H 1.08995 * 109.47185 * 300.00399 * 12 10 9 37 37 H 1.08997 * 109.46895 * 54.99888 * 13 10 9 38 38 H 1.09000 * 109.47125 * 174.99825 * 13 10 9 39 39 H 0.97006 * 119.99732 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 6 5.8083 -3.6697 -1.4659 9 7 6.1255 -4.0343 -2.8532 10 6 7.0799 -5.1501 -2.8991 11 1 6.8833 -5.8307 -2.0707 12 6 8.5057 -4.6066 -2.7852 13 6 6.9243 -5.9002 -4.2236 14 6 5.5609 -6.5393 -4.2816 15 1 4.8738 -6.4219 -3.4566 16 6 5.1901 -7.2731 -5.3885 17 7 6.0265 -7.4156 -6.3933 18 14 3.4997 -8.0648 -5.4608 19 1 2.5351 -7.1170 -6.0744 20 1 3.5671 -9.3018 -6.2797 21 1 3.0531 -8.4049 -4.0860 22 7 2.2199 -1.1083 -0.0064 23 1 -0.3633 -0.0052 1.0277 24 1 -0.3633 -0.8874 -0.5184 25 1 -0.3633 0.8926 -0.5093 26 1 1.8392 2.1308 0.0005 27 1 5.3966 -1.8274 0.5002 28 1 4.0439 -2.9843 0.4958 29 1 3.9003 -2.8071 -1.9733 30 1 5.2530 -1.6502 -1.9690 31 1 6.7213 -3.3696 -0.9517 32 1 5.3690 -4.5269 -0.9559 33 1 5.2873 -4.2545 -3.3699 34 1 8.6164 -4.0723 -1.8416 35 1 9.2138 -5.4345 -2.8188 36 1 8.7023 -3.9259 -3.6135 37 1 7.0334 -5.2005 -5.0522 38 1 7.6907 -6.6718 -4.2963 39 1 5.7655 -7.9315 -7.1722 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393780095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:17 Heat of formation + Delta-G solvation = 13.782413 kcal Electronic energy + Delta-G solvation = -17541.870500 eV Core-core repulsion = 14803.091431 eV Total energy + Delta-G solvation = -2738.779069 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.01115 -37.01068 -34.75480 -32.72830 -31.69357 -29.64866 -27.78788 -27.37224 -25.98023 -23.22341 -22.32674 -21.06101 -19.84420 -19.30775 -17.73971 -16.34482 -15.72518 -15.36221 -15.10898 -14.69059 -14.45045 -14.16091 -13.67894 -13.24733 -13.08254 -12.81514 -12.71741 -12.11080 -12.05283 -11.76143 -11.68385 -11.47292 -11.32352 -11.11278 -10.86762 -10.69227 -10.57456 -10.45147 -10.13026 -9.73797 -9.53357 -9.21602 -9.04936 -8.81166 -8.38186 -7.62836 -6.01469 -4.04510 0.56402 1.23180 1.61148 2.63700 3.31342 3.37970 3.40819 3.89184 4.44740 4.67190 4.86208 4.95217 5.03297 5.06419 5.32532 5.35351 5.43553 5.46818 5.50657 5.62133 5.74693 5.81274 5.92674 6.02505 6.09637 6.23310 6.30879 6.36957 6.40194 6.57718 6.94971 6.97209 7.54566 7.63985 7.65566 7.98205 8.08447 8.29583 8.39263 9.01744 9.59801 11.09443 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.003752 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.877582 B = 7460.420641 C = 8631.465681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.069 3.931 3 C -0.273 4.273 4 S 0.114 5.886 5 C 0.069 3.931 6 C -0.045 4.045 7 C -0.110 4.110 8 C 0.061 3.939 9 N -0.684 5.684 10 C 0.087 3.913 11 H 0.029 0.971 12 C -0.135 4.135 13 C 0.020 3.980 14 C -0.524 4.524 15 H 0.052 0.948 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.889 3.111 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.275 1.275 22 N -0.474 5.474 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.174 0.826 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.025 0.975 33 H 0.354 0.646 34 H 0.036 0.964 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.026 0.974 38 H 0.021 0.979 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 16.656 14.361 22.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.412 4.412 4 S 0.369 5.631 5 C -0.209 4.209 6 C -0.086 4.086 7 C -0.149 4.149 8 C -0.069 4.069 9 N -0.318 5.318 10 C -0.022 4.022 11 H 0.047 0.953 12 C -0.193 4.193 13 C -0.017 4.017 14 C -0.562 4.562 15 H 0.070 0.930 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.717 3.283 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.200 1.200 22 N -0.189 5.189 23 H 0.093 0.907 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.192 0.808 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.175 0.825 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.116 17.077 14.119 22.537 hybrid contribution -2.453 -1.135 0.126 2.706 sum -6.569 15.943 14.245 22.366 Atomic orbital electron populations 1.20364 0.87215 1.03432 1.02843 1.20342 0.98298 0.86573 1.01091 1.26760 0.95231 1.03837 1.15359 1.84006 1.07355 1.03470 1.68239 1.27147 0.94018 0.98253 1.01512 1.20335 0.95091 0.93590 0.99598 1.21562 1.00082 0.99586 0.93702 1.21893 0.97314 0.95634 0.92056 1.60564 1.18769 1.41702 1.10800 1.21611 0.90659 0.89866 1.00081 0.95315 1.21794 0.96980 1.00188 1.00321 1.19282 0.96789 0.94753 0.90910 1.21179 1.00272 1.32207 1.02571 0.93011 1.24984 0.97028 0.96360 0.95705 1.69960 1.35346 1.40773 1.06941 0.86645 0.84700 0.78962 0.78009 1.20591 1.21219 1.19974 1.66147 1.04612 1.31505 1.16658 0.90727 0.90437 0.90793 0.80848 0.89533 0.88721 0.91282 0.90978 0.91804 0.95668 0.82475 0.94532 0.93363 0.92671 0.95609 0.96069 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.31 36.01 0.37 -0.30 16 2 C 0.07 0.79 6.74 -84.22 -0.57 0.23 16 3 C -0.27 -2.70 11.13 29.12 0.32 -2.37 16 4 S 0.11 1.16 23.18 -107.50 -2.49 -1.33 16 5 C 0.07 0.85 6.64 -13.46 -0.09 0.76 16 6 C -0.04 -0.51 5.80 -27.88 -0.16 -0.67 16 7 C -0.11 -1.48 5.46 -26.73 -0.15 -1.62 16 8 C 0.06 0.94 5.48 -3.82 -0.02 0.92 16 9 N -0.68 -13.14 6.31 -106.72 -0.67 -13.81 16 10 C 0.09 1.82 2.59 -67.70 -0.18 1.64 16 11 H 0.03 0.62 7.80 -51.93 -0.40 0.21 16 12 C -0.13 -2.43 9.42 37.16 0.35 -2.08 16 13 C 0.02 0.51 4.57 -27.89 -0.13 0.38 16 14 C -0.52 -14.50 8.12 -34.44 -0.28 -14.78 16 15 H 0.05 1.40 7.49 -52.49 -0.39 1.00 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 18 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 N -0.47 -6.51 10.53 -8.06 -0.08 -6.59 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 26 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.91 7.43 -51.93 -0.39 0.52 16 32 H 0.03 0.40 8.05 -51.93 -0.42 -0.02 16 33 H 0.35 7.47 7.21 -39.29 -0.28 7.18 16 34 H 0.04 0.57 7.45 -51.93 -0.39 0.19 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -30.69 337.22 -9.55 -40.25 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.48 Total: 1.97 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -0.62 Total: -16.26 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.02 Total: -46.32 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.49 Total: -1.33 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.69 -9.55 -40.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393780095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.030 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds