Wall clock time and date at job start Mon Mar 30 2020 07:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 C 1.53001 * 109.46830 * 179.97438 * 7 6 5 9 9 N 1.46904 * 109.46663 * 180.02562 * 8 7 6 10 10 C 1.46904 * 110.99784 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47142 * 34.99493 * 10 9 8 12 12 C 1.53009 * 109.46899 * 274.99961 * 10 9 8 13 13 C 1.53001 * 109.47191 * 155.00285 * 10 9 8 14 14 C 1.50694 * 109.46709 * 294.99520 * 13 10 9 15 15 H 1.08001 * 120.00503 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99605 * 179.97438 * 14 13 10 17 17 N 1.31507 * 120.00025 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99755 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47219 * 90.00257 * 18 16 14 20 20 H 1.48500 * 109.47171 * 210.00083 * 18 16 14 21 21 H 1.48504 * 109.47409 * 330.00054 * 18 16 14 22 22 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 23 23 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 26 26 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 27 27 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 28 28 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 29 29 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 30 30 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 31 31 H 1.08998 * 109.47655 * 299.99904 * 8 7 6 32 32 H 1.08996 * 109.46711 * 60.00762 * 8 7 6 33 33 H 1.00898 * 111.00380 * 303.95134 * 9 8 7 34 34 H 1.09001 * 109.46462 * 59.99968 * 12 10 9 35 35 H 1.08992 * 109.46827 * 179.97438 * 12 10 9 36 36 H 1.08995 * 109.47185 * 300.00399 * 12 10 9 37 37 H 1.08997 * 109.46895 * 54.99888 * 13 10 9 38 38 H 1.09000 * 109.47125 * 174.99825 * 13 10 9 39 39 H 0.97006 * 119.99732 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 6 5.8083 -3.6697 -1.4659 9 7 6.1255 -4.0343 -2.8532 10 6 7.0799 -5.1501 -2.8991 11 1 6.8833 -5.8307 -2.0707 12 6 8.5057 -4.6066 -2.7852 13 6 6.9243 -5.9002 -4.2236 14 6 5.5609 -6.5393 -4.2816 15 1 4.8738 -6.4219 -3.4566 16 6 5.1901 -7.2731 -5.3885 17 7 6.0265 -7.4156 -6.3933 18 14 3.4997 -8.0648 -5.4608 19 1 2.5351 -7.1170 -6.0744 20 1 3.5671 -9.3018 -6.2797 21 1 3.0531 -8.4049 -4.0860 22 7 2.2199 -1.1083 -0.0064 23 1 -0.3633 -0.0052 1.0277 24 1 -0.3633 -0.8874 -0.5184 25 1 -0.3633 0.8926 -0.5093 26 1 1.8392 2.1308 0.0005 27 1 5.3966 -1.8274 0.5002 28 1 4.0439 -2.9843 0.4958 29 1 3.9003 -2.8071 -1.9733 30 1 5.2530 -1.6502 -1.9690 31 1 6.7213 -3.3696 -0.9517 32 1 5.3690 -4.5269 -0.9559 33 1 5.2873 -4.2545 -3.3699 34 1 8.6164 -4.0723 -1.8416 35 1 9.2138 -5.4345 -2.8188 36 1 8.7023 -3.9259 -3.6135 37 1 7.0334 -5.2005 -5.0522 38 1 7.6907 -6.6718 -4.2963 39 1 5.7655 -7.9315 -7.1722 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393780095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:17 Heat of formation + Delta-G solvation = -5.400047 kcal Electronic energy + Delta-G solvation = -17542.702314 eV Core-core repulsion = 14803.091431 eV Total energy + Delta-G solvation = -2739.610883 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84572 -38.52154 -36.02499 -34.60514 -32.88119 -30.91763 -29.28003 -28.53248 -27.14790 -25.08902 -23.45906 -22.19839 -21.02121 -20.65107 -18.55470 -18.51952 -16.97582 -16.54069 -16.47892 -16.01419 -15.69627 -15.49974 -14.85496 -14.47972 -14.12075 -13.96636 -13.59361 -13.47360 -13.39678 -13.22126 -13.15133 -12.93567 -12.62430 -12.50415 -12.32091 -12.22605 -12.18127 -12.03428 -11.63261 -11.22234 -10.98917 -10.59944 -10.58014 -10.35815 -9.60825 -9.17288 -8.20345 -6.30643 -0.25514 0.44368 0.80727 1.38581 1.39092 1.49492 1.79446 2.39202 3.05694 3.12838 3.48404 3.88050 4.05728 4.26268 4.27698 4.34333 4.36152 4.47339 4.56629 4.64264 4.74015 4.74726 4.76704 4.82166 4.87421 4.98518 5.03629 5.19460 5.24745 5.27942 5.35643 5.36769 5.50955 5.57151 5.84435 6.20720 6.44412 6.64146 6.82312 6.84842 7.38161 8.91327 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.003752 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.877582 B = 7460.420641 C = 8631.465681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.041 3.959 3 C -0.266 4.266 4 S 0.145 5.855 5 C 0.043 3.957 6 C -0.038 4.038 7 C -0.097 4.097 8 C 0.063 3.937 9 N -0.688 5.688 10 C 0.095 3.905 11 H 0.025 0.975 12 C -0.127 4.127 13 C 0.026 3.974 14 C -0.535 4.535 15 H 0.055 0.945 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.958 3.042 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.267 1.267 22 N -0.508 5.508 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.203 0.797 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.021 0.979 33 H 0.340 0.660 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.048 0.952 37 H -0.003 1.003 38 H -0.005 1.005 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 18.121 15.870 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C -0.405 4.405 4 S 0.401 5.599 5 C -0.234 4.234 6 C -0.079 4.079 7 C -0.137 4.137 8 C -0.066 4.066 9 N -0.321 5.321 10 C -0.015 4.015 11 H 0.043 0.957 12 C -0.185 4.185 13 C -0.011 4.011 14 C -0.573 4.573 15 H 0.074 0.926 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.783 3.217 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.191 1.191 22 N -0.224 5.224 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.220 0.780 27 H 0.129 0.871 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.039 0.961 33 H 0.159 0.841 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.801 18.552 15.651 24.742 hybrid contribution -2.217 -1.517 -0.334 2.707 sum -7.018 17.035 15.317 23.960 Atomic orbital electron populations 1.20434 0.85657 1.03881 1.03652 1.20793 0.99602 0.86601 1.02030 1.27177 0.95041 1.04813 1.13478 1.83830 1.07344 1.01528 1.67235 1.27242 0.93964 0.99664 1.02568 1.20271 0.96072 0.93596 0.97996 1.21396 0.98422 0.98682 0.95205 1.21983 0.98750 0.96116 0.89774 1.60624 1.17882 1.40442 1.13113 1.21437 0.93037 0.90194 0.96836 0.95723 1.21709 0.94784 1.00390 1.01629 1.19150 0.95351 0.93821 0.92797 1.21528 1.01099 1.32018 1.02658 0.92633 1.25868 1.01023 0.97027 0.95362 1.70088 1.37470 1.41771 1.07652 0.85550 0.79803 0.77991 0.78309 1.19909 1.20771 1.19111 1.66161 1.05578 1.33222 1.17472 0.89696 0.91721 0.88608 0.77965 0.87076 0.89135 0.93482 0.90855 0.89735 0.96106 0.84112 0.91600 0.92963 0.93262 0.98477 0.98617 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.31 71.24 0.73 -0.47 16 2 C 0.04 0.89 6.74 41.52 0.28 1.17 16 3 C -0.27 -4.64 11.13 66.78 0.74 -3.90 16 4 S 0.15 2.65 23.18 -56.49 -1.31 1.34 16 5 C 0.04 1.01 6.64 88.52 0.59 1.60 16 6 C -0.04 -0.81 5.80 29.85 0.17 -0.64 16 7 C -0.10 -2.53 5.46 30.59 0.17 -2.37 16 8 C 0.06 1.86 5.48 86.30 0.47 2.33 16 9 N -0.69 -26.20 6.31 -491.54 -3.10 -29.30 16 10 C 0.09 3.94 2.59 44.92 0.12 4.05 16 11 H 0.02 1.05 7.80 -2.39 -0.02 1.03 16 12 C -0.13 -4.41 9.42 71.99 0.68 -3.74 16 13 C 0.03 1.38 4.57 29.85 0.14 1.52 16 14 C -0.53 -30.10 8.12 25.60 0.21 -29.89 16 15 H 0.06 3.02 7.49 -2.91 -0.02 3.00 16 16 C 0.01 0.31 5.46 84.66 0.46 0.78 16 17 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 18 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 N -0.51 -13.65 10.53 -179.40 -1.89 -15.53 16 23 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.10 1.03 8.12 -2.38 -0.02 1.01 16 26 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 27 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 2.16 7.43 -2.39 -0.02 2.14 16 32 H 0.02 0.64 8.05 -2.39 -0.02 0.62 16 33 H 0.34 14.54 7.21 -89.70 -0.65 13.89 16 34 H 0.07 1.90 7.45 -2.39 -0.02 1.88 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -66.87 337.22 1.14 -65.73 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.37 Total: 17.06 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 4.76 Total: -29.56 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -4.71 Total: -101.29 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.31 Total: 1.34 kcal Total: -66.87 1.14 -65.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393780095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.329 kcal (2) G-P(sol) polarization free energy of solvation -66.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds